EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000015387 (Gene tree)
Gene ID: -
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine (psi) synthase family member 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 4730 bases
Position: chrscaffold_48:1525534-1530263
Accession: ZDB-GENE-080723-73
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000020288	TruB_N	PF01509.18	2.7e-44	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000020327	-	1075	-	ENSGACP00000020288	204 (aa)	-	G3PRQ2

Gene Model

Click here to download ENSGACG00000015387's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000015387's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000015387	trub1	94	33.163	ENSGACG00000001476	trub2	58	33.163

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000015387	trub1	96	68.205	ENSG00000165832	TRUB1	56	68.205	Homo_sapiens
ENSGACG00000015387	trub1	96	89.744	ENSAPOG00000020565	trub1	76	87.019	Acanthochromis_polyacanthus
ENSGACG00000015387	trub1	98	66.667	ENSAMEG00000014931	TRUB1	57	66.667	Ailuropoda_melanoleuca
ENSGACG00000015387	trub1	89	91.160	ENSACIG00000003060	trub1	65	90.805	Amphilophus_citrinellus
ENSGACG00000015387	trub1	96	89.744	ENSAOCG00000017188	trub1	76	87.019	Amphiprion_ocellaris
ENSGACG00000015387	trub1	96	90.256	ENSAPEG00000015209	trub1	76	87.500	Amphiprion_percula
ENSGACG00000015387	trub1	94	90.052	ENSATEG00000023291	trub1	68	90.052	Anabas_testudineus
ENSGACG00000015387	trub1	95	68.041	ENSAPLG00000006808	TRUB1	70	68.041	Anas_platyrhynchos
ENSGACG00000015387	trub1	95	67.526	ENSACAG00000009282	TRUB1	70	67.526	Anolis_carolinensis
ENSGACG00000015387	trub1	96	68.205	ENSANAG00000022870	TRUB1	56	68.205	Aotus_nancymaae
ENSGACG00000015387	trub1	98	89.447	ENSACLG00000000823	trub1	72	89.447	Astatotilapia_calliptera
ENSGACG00000015387	trub1	100	76.471	ENSAMXG00000015845	trub1	68	76.471	Astyanax_mexicanus
ENSGACG00000015387	trub1	96	69.744	ENSBTAG00000012955	TRUB1	55	69.744	Bos_taurus
ENSGACG00000015387	trub1	96	68.205	ENSCJAG00000047815	TRUB1	56	68.205	Callithrix_jacchus
ENSGACG00000015387	trub1	96	68.718	ENSCAFG00000011688	TRUB1	56	68.718	Canis_familiaris
ENSGACG00000015387	trub1	96	68.718	ENSCAFG00020013237	TRUB1	56	68.718	Canis_lupus_dingo
ENSGACG00000015387	trub1	96	68.718	ENSCHIG00000020884	TRUB1	58	68.718	Capra_hircus
ENSGACG00000015387	trub1	96	67.179	ENSTSYG00000000446	TRUB1	56	67.179	Carlito_syrichta
ENSGACG00000015387	trub1	96	59.487	ENSCAPG00000017088	TRUB1	77	58.794	Cavia_aperea
ENSGACG00000015387	trub1	66	65.185	ENSCPOG00000030129	-	53	65.185	Cavia_porcellus
ENSGACG00000015387	trub1	65	65.909	ENSCPOG00000040236	-	54	65.909	Cavia_porcellus
ENSGACG00000015387	trub1	96	68.205	ENSCCAG00000028842	TRUB1	56	68.205	Cebus_capucinus
ENSGACG00000015387	trub1	96	68.205	ENSCATG00000033431	TRUB1	56	68.205	Cercocebus_atys
ENSGACG00000015387	trub1	65	64.394	ENSCLAG00000008664	TRUB1	54	64.394	Chinchilla_lanigera
ENSGACG00000015387	trub1	96	68.205	ENSCSAG00000004891	TRUB1	56	68.205	Chlorocebus_sabaeus
ENSGACG00000015387	trub1	94	58.639	ENSCHOG00000011931	TRUB1	55	58.639	Choloepus_hoffmanni
ENSGACG00000015387	trub1	95	70.619	ENSCPBG00000003051	TRUB1	67	70.619	Chrysemys_picta_bellii
ENSGACG00000015387	trub1	96	68.205	ENSCANG00000029445	TRUB1	56	68.205	Colobus_angolensis_palliatus
ENSGACG00000015387	trub1	98	58.794	ENSCGRG00001010322	-	53	58.794	Cricetulus_griseus_chok1gshd
ENSGACG00000015387	trub1	98	66.332	ENSCGRG00001016772	-	66	66.332	Cricetulus_griseus_chok1gshd
ENSGACG00000015387	trub1	98	66.332	ENSCGRG00000010806	Trub1	61	66.332	Cricetulus_griseus_crigri
ENSGACG00000015387	trub1	95	82.474	ENSCSEG00000011261	trub1	63	82.474	Cynoglossus_semilaevis
ENSGACG00000015387	trub1	98	82.412	ENSCVAG00000008791	trub1	61	82.412	Cyprinodon_variegatus
ENSGACG00000015387	trub1	97	74.619	ENSDARG00000053805	trub1	68	74.619	Danio_rerio
ENSGACG00000015387	trub1	98	65.500	ENSDNOG00000001069	TRUB1	57	65.500	Dasypus_novemcinctus
ENSGACG00000015387	trub1	98	66.332	ENSDORG00000010431	Trub1	58	66.332	Dipodomys_ordii
ENSGACG00000015387	trub1	96	68.205	ENSEASG00005014739	TRUB1	56	68.205	Equus_asinus_asinus
ENSGACG00000015387	trub1	96	68.205	ENSECAG00000007177	TRUB1	56	68.205	Equus_caballus
ENSGACG00000015387	trub1	96	57.949	ENSEEUG00000013993	TRUB1	54	57.949	Erinaceus_europaeus
ENSGACG00000015387	trub1	95	80.928	ENSELUG00000000502	trub1	68	80.928	Esox_lucius
ENSGACG00000015387	trub1	96	68.718	ENSFCAG00000031927	TRUB1	57	67.839	Felis_catus
ENSGACG00000015387	trub1	96	68.205	ENSFALG00000002232	TRUB1	76	68.205	Ficedula_albicollis
ENSGACG00000015387	trub1	65	66.667	ENSFDAG00000008140	TRUB1	54	66.667	Fukomys_damarensis
ENSGACG00000015387	trub1	96	83.163	ENSFHEG00000004016	trub1	67	83.163	Fundulus_heteroclitus
ENSGACG00000015387	trub1	95	66.495	ENSGALG00000009091	TRUB1	79	65.116	Gallus_gallus
ENSGACG00000015387	trub1	92	84.127	ENSGAFG00000009193	trub1	66	85.542	Gambusia_affinis
ENSGACG00000015387	trub1	95	70.619	ENSGAGG00000009758	TRUB1	56	70.619	Gopherus_agassizii
ENSGACG00000015387	trub1	96	68.205	ENSGGOG00000004583	TRUB1	56	68.205	Gorilla_gorilla
ENSGACG00000015387	trub1	98	88.945	ENSHBUG00000016787	trub1	72	88.945	Haplochromis_burtoni
ENSGACG00000015387	trub1	98	66.834	ENSHGLG00000015314	TRUB1	57	66.834	Heterocephalus_glaber_female
ENSGACG00000015387	trub1	65	66.667	ENSHGLG00100009183	TRUB1	56	66.667	Heterocephalus_glaber_male
ENSGACG00000015387	trub1	99	84.729	ENSHCOG00000017877	trub1	74	84.729	Hippocampus_comes
ENSGACG00000015387	trub1	97	75.635	ENSIPUG00000017559	trub1	69	75.635	Ictalurus_punctatus
ENSGACG00000015387	trub1	96	68.205	ENSSTOG00000003641	TRUB1	58	68.205	Ictidomys_tridecemlineatus
ENSGACG00000015387	trub1	96	67.179	ENSJJAG00000011800	Trub1	59	66.332	Jaculus_jaculus
ENSGACG00000015387	trub1	100	81.991	ENSKMAG00000006232	trub1	76	81.991	Kryptolebias_marmoratus
ENSGACG00000015387	trub1	96	89.796	ENSLBEG00000026722	trub1	69	90.230	Labrus_bergylta
ENSGACG00000015387	trub1	94	72.396	ENSLACG00000014885	TRUB1	64	72.396	Latimeria_chalumnae
ENSGACG00000015387	trub1	96	75.385	ENSLOCG00000012979	trub1	67	75.385	Lepisosteus_oculatus
ENSGACG00000015387	trub1	96	68.718	ENSLAFG00000015452	TRUB1	56	68.718	Loxodonta_africana
ENSGACG00000015387	trub1	96	68.205	ENSMFAG00000031767	TRUB1	56	68.205	Macaca_fascicularis
ENSGACG00000015387	trub1	96	68.205	ENSMMUG00000001902	TRUB1	56	68.205	Macaca_mulatta
ENSGACG00000015387	trub1	96	62.051	ENSMNEG00000044646	TRUB1	54	62.564	Macaca_nemestrina
ENSGACG00000015387	trub1	96	68.205	ENSMLEG00000042655	TRUB1	56	68.205	Mandrillus_leucophaeus
ENSGACG00000015387	trub1	98	89.447	ENSMZEG00005024095	trub1	72	89.447	Maylandia_zebra
ENSGACG00000015387	trub1	95	68.041	ENSMGAG00000011135	TRUB1	67	68.041	Meleagris_gallopavo
ENSGACG00000015387	trub1	98	63.819	ENSMAUG00000011101	Trub1	58	63.819	Mesocricetus_auratus
ENSGACG00000015387	trub1	96	67.692	ENSMICG00000016324	TRUB1	56	67.692	Microcebus_murinus
ENSGACG00000015387	trub1	95	67.010	ENSMOCG00000017759	Trub1	59	67.010	Microtus_ochrogaster
ENSGACG00000015387	trub1	95	69.072	ENSMODG00000009676	TRUB1	54	69.072	Monodelphis_domestica
ENSGACG00000015387	trub1	96	67.179	MGP_CAROLIEiJ_G0023100	Trub1	59	66.332	Mus_caroli
ENSGACG00000015387	trub1	98	65.327	ENSMUSG00000025086	Trub1	59	65.327	Mus_musculus
ENSGACG00000015387	trub1	98	65.829	MGP_PahariEiJ_G0014588	Trub1	59	65.829	Mus_pahari
ENSGACG00000015387	trub1	98	65.829	MGP_SPRETEiJ_G0024021	Trub1	59	65.829	Mus_spretus
ENSGACG00000015387	trub1	96	68.718	ENSMPUG00000003556	TRUB1	56	68.718	Mustela_putorius_furo
ENSGACG00000015387	trub1	96	67.692	ENSMLUG00000017686	TRUB1	57	67.692	Myotis_lucifugus
ENSGACG00000015387	trub1	96	67.692	ENSNGAG00000018682	Trub1	57	66.834	Nannospalax_galili
ENSGACG00000015387	trub1	96	90.306	ENSNBRG00000023393	trub1	70	90.306	Neolamprologus_brichardi
ENSGACG00000015387	trub1	96	68.205	ENSNLEG00000016345	TRUB1	56	68.205	Nomascus_leucogenys
ENSGACG00000015387	trub1	74	70.861	ENSMEUG00000006603	TRUB1	56	70.861	Notamacropus_eugenii
ENSGACG00000015387	trub1	96	67.179	ENSOPRG00000009371	TRUB1	57	67.179	Ochotona_princeps
ENSGACG00000015387	trub1	96	65.641	ENSODEG00000010854	TRUB1	56	65.641	Octodon_degus
ENSGACG00000015387	trub1	96	89.286	ENSONIG00000007249	trub1	71	89.286	Oreochromis_niloticus
ENSGACG00000015387	trub1	94	68.750	ENSOANG00000001556	TRUB1	63	68.750	Ornithorhynchus_anatinus
ENSGACG00000015387	trub1	96	67.692	ENSOCUG00000009456	TRUB1	56	67.692	Oryctolagus_cuniculus
ENSGACG00000015387	trub1	95	84.536	ENSORLG00000029719	trub1	70	84.536	Oryzias_latipes
ENSGACG00000015387	trub1	95	84.536	ENSORLG00020016767	trub1	69	84.536	Oryzias_latipes_hni
ENSGACG00000015387	trub1	98	80.488	ENSORLG00015014728	trub1	73	80.488	Oryzias_latipes_hsok
ENSGACG00000015387	trub1	97	82.741	ENSOMEG00000014556	trub1	69	82.741	Oryzias_melastigma
ENSGACG00000015387	trub1	96	68.205	ENSOGAG00000015895	TRUB1	57	67.337	Otolemur_garnettii
ENSGACG00000015387	trub1	96	68.020	ENSOARG00000015591	TRUB1	56	68.020	Ovis_aries
ENSGACG00000015387	trub1	96	68.205	ENSPPAG00000043645	TRUB1	56	68.205	Pan_paniscus
ENSGACG00000015387	trub1	96	68.205	ENSPPRG00000007096	TRUB1	56	68.205	Panthera_pardus
ENSGACG00000015387	trub1	96	68.205	ENSPTIG00000006378	TRUB1	56	68.205	Panthera_tigris_altaica
ENSGACG00000015387	trub1	96	68.205	ENSPTRG00000002964	TRUB1	56	68.205	Pan_troglodytes
ENSGACG00000015387	trub1	96	68.205	ENSPANG00000020712	TRUB1	56	68.205	Papio_anubis
ENSGACG00000015387	trub1	87	75.706	ENSPKIG00000003852	trub1	74	75.706	Paramormyrops_kingsleyae
ENSGACG00000015387	trub1	94	71.354	ENSPSIG00000012877	TRUB1	66	71.354	Pelodiscus_sinensis
ENSGACG00000015387	trub1	95	79.897	ENSPMGG00000000075	trub1	70	79.897	Periophthalmus_magnuspinnatus
ENSGACG00000015387	trub1	98	67.337	ENSPEMG00000011156	Trub1	59	67.337	Peromyscus_maniculatus_bairdii
ENSGACG00000015387	trub1	95	69.072	ENSPCIG00000009729	TRUB1	53	69.072	Phascolarctos_cinereus
ENSGACG00000015387	trub1	96	85.714	ENSPFOG00000009950	trub1	72	85.714	Poecilia_formosa
ENSGACG00000015387	trub1	96	85.204	ENSPLAG00000013855	trub1	69	85.204	Poecilia_latipinna
ENSGACG00000015387	trub1	96	85.714	ENSPMEG00000009064	trub1	71	85.714	Poecilia_mexicana
ENSGACG00000015387	trub1	96	85.714	ENSPREG00000003343	trub1	71	85.714	Poecilia_reticulata
ENSGACG00000015387	trub1	96	67.692	ENSPPYG00000002676	TRUB1	56	67.692	Pongo_abelii
ENSGACG00000015387	trub1	96	61.026	ENSPCAG00000008427	TRUB1	55	61.026	Procavia_capensis
ENSGACG00000015387	trub1	96	61.538	ENSPCOG00000024360	TRUB1	53	60.513	Propithecus_coquereli
ENSGACG00000015387	trub1	74	69.536	ENSPVAG00000007575	TRUB1	57	69.536	Pteropus_vampyrus
ENSGACG00000015387	trub1	98	89.447	ENSPNYG00000018614	trub1	72	89.447	Pundamilia_nyererei
ENSGACG00000015387	trub1	93	75.661	ENSPNAG00000006881	trub1	68	75.824	Pygocentrus_nattereri
ENSGACG00000015387	trub1	96	65.641	ENSRNOG00000017321	Trub1	58	64.824	Rattus_norvegicus
ENSGACG00000015387	trub1	96	56.345	ENSRBIG00000033423	TRUB1	52	56.345	Rhinopithecus_bieti
ENSGACG00000015387	trub1	96	68.205	ENSRROG00000033902	TRUB1	56	68.205	Rhinopithecus_roxellana
ENSGACG00000015387	trub1	96	68.205	ENSSBOG00000024237	TRUB1	56	68.205	Saimiri_boliviensis_boliviensis
ENSGACG00000015387	trub1	95	68.878	ENSSHAG00000009346	TRUB1	66	68.878	Sarcophilus_harrisii
ENSGACG00000015387	trub1	100	75.490	ENSSFOG00015022124	trub1	69	75.490	Scleropages_formosus
ENSGACG00000015387	trub1	96	92.347	ENSSMAG00000001020	trub1	70	92.347	Scophthalmus_maximus
ENSGACG00000015387	trub1	96	89.286	ENSSDUG00000016414	trub1	71	89.286	Seriola_dumerili
ENSGACG00000015387	trub1	96	89.286	ENSSLDG00000015486	trub1	71	89.286	Seriola_lalandi_dorsalis
ENSGACG00000015387	trub1	95	70.103	ENSSPUG00000001642	TRUB1	67	70.103	Sphenodon_punctatus
ENSGACG00000015387	trub1	100	85.308	ENSSPAG00000001217	trub1	76	85.308	Stegastes_partitus
ENSGACG00000015387	trub1	96	67.179	ENSSSCG00000010653	TRUB1	57	67.179	Sus_scrofa
ENSGACG00000015387	trub1	96	69.231	ENSTGUG00000010971	TRUB1	70	69.231	Taeniopygia_guttata
ENSGACG00000015387	trub1	98	57.000	ENSTBEG00000002880	TRUB1	78	57.000	Tupaia_belangeri
ENSGACG00000015387	trub1	74	68.874	ENSTTRG00000005767	TRUB1	58	68.874	Tursiops_truncatus
ENSGACG00000015387	trub1	96	68.718	ENSUAMG00000024876	TRUB1	56	68.718	Ursus_americanus
ENSGACG00000015387	trub1	96	68.718	ENSUMAG00000002411	TRUB1	58	68.718	Ursus_maritimus
ENSGACG00000015387	trub1	96	68.718	ENSVPAG00000005507	TRUB1	56	68.718	Vicugna_pacos
ENSGACG00000015387	trub1	94	71.354	ENSXETG00000023828	trub1	70	71.354	Xenopus_tropicalis
ENSGACG00000015387	trub1	92	85.106	ENSXCOG00000017847	trub1	66	85.106	Xiphophorus_couchianus
ENSGACG00000015387	trub1	96	84.694	ENSXMAG00000014701	trub1	71	84.694	Xiphophorus_maculatus