EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000015686 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 7934 bases
Position: chrgroupIII:8891124-8899057
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000020702	ResIII	PF04851.15	5.1e-11	1	1
ENSGACP00000020702	DEAD	PF00270.29	2.3e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000020741	-	2760	-	ENSGACP00000020702	920 (aa)	-	G3PSW6

Gene Model

Click here to download ENSGACG00000015686's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000015686's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000015686	hfm1	69	32.312	ENSGACG00000014141	ascc3	57	32.312
ENSGACG00000015686	hfm1	69	33.023	ENSGACG00000011474	snrnp200	58	33.023

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000015686	hfm1	100	62.319	ENSG00000162669	HFM1	66	62.319	Homo_sapiens
ENSGACG00000015686	hfm1	85	80.170	ENSAPOG00000005304	hfm1	93	80.170	Acanthochromis_polyacanthus
ENSGACG00000015686	hfm1	100	61.826	ENSAMEG00000000432	HFM1	66	61.826	Ailuropoda_melanoleuca
ENSGACG00000015686	hfm1	98	75.605	ENSACIG00000021553	hfm1	84	75.605	Amphilophus_citrinellus
ENSGACG00000015686	hfm1	85	80.947	ENSAOCG00000022839	hfm1	96	83.712	Amphiprion_ocellaris
ENSGACG00000015686	hfm1	85	81.463	ENSAPEG00000014316	hfm1	96	84.051	Amphiprion_percula
ENSGACG00000015686	hfm1	100	81.573	ENSATEG00000019181	hfm1	80	80.832	Anabas_testudineus
ENSGACG00000015686	hfm1	99	61.244	ENSAPLG00000013639	HFM1	66	61.244	Anas_platyrhynchos
ENSGACG00000015686	hfm1	100	60.415	ENSANAG00000029513	HFM1	66	60.415	Aotus_nancymaae
ENSGACG00000015686	hfm1	98	75.238	ENSACLG00000009033	hfm1	95	78.458	Astatotilapia_calliptera
ENSGACG00000015686	hfm1	99	68.318	ENSAMXG00000006108	hfm1	67	68.318	Astyanax_mexicanus
ENSGACG00000015686	hfm1	99	62.019	ENSBTAG00000020856	HFM1	66	62.019	Bos_taurus
ENSGACG00000015686	hfm1	100	61.515	ENSCJAG00000001843	HFM1	67	61.515	Callithrix_jacchus
ENSGACG00000015686	hfm1	100	61.850	ENSCAFG00000020187	HFM1	66	61.850	Canis_familiaris
ENSGACG00000015686	hfm1	99	61.515	ENSTSYG00000014250	HFM1	67	61.515	Carlito_syrichta
ENSGACG00000015686	hfm1	100	60.892	ENSCPOG00000007421	HFM1	68	60.892	Cavia_porcellus
ENSGACG00000015686	hfm1	99	61.163	ENSCCAG00000033206	HFM1	67	61.163	Cebus_capucinus
ENSGACG00000015686	hfm1	100	61.920	ENSCATG00000030987	HFM1	66	61.920	Cercocebus_atys
ENSGACG00000015686	hfm1	100	60.892	ENSCLAG00000005173	HFM1	64	60.892	Chinchilla_lanigera
ENSGACG00000015686	hfm1	71	50.978	ENSCSAVG00000005094	-	100	50.978	Ciona_savignyi
ENSGACG00000015686	hfm1	96	57.766	ENSCGRG00001016995	Hfm1	66	57.550	Cricetulus_griseus_chok1gshd
ENSGACG00000015686	hfm1	99	60.188	ENSCGRG00000017181	Hfm1	67	59.959	Cricetulus_griseus_crigri
ENSGACG00000015686	hfm1	97	75.812	ENSCSEG00000017659	hfm1	87	75.916	Cynoglossus_semilaevis
ENSGACG00000015686	hfm1	73	76.934	ENSCVAG00000005075	hfm1	86	76.934	Cyprinodon_variegatus
ENSGACG00000015686	hfm1	86	69.617	ENSDARG00000104288	hfm1	76	69.617	Danio_rerio
ENSGACG00000015686	hfm1	99	60.838	ENSDNOG00000004776	HFM1	64	60.838	Dasypus_novemcinctus
ENSGACG00000015686	hfm1	100	59.512	ENSDORG00000014661	Hfm1	67	59.512	Dipodomys_ordii
ENSGACG00000015686	hfm1	98	60.485	ENSEASG00005015424	HFM1	90	60.485	Equus_asinus_asinus
ENSGACG00000015686	hfm1	100	62.241	ENSECAG00000024039	HFM1	64	62.241	Equus_caballus
ENSGACG00000015686	hfm1	93	73.591	ENSELUG00000018944	hfm1	97	73.591	Esox_lucius
ENSGACG00000015686	hfm1	100	61.515	ENSFCAG00000029116	HFM1	66	61.515	Felis_catus
ENSGACG00000015686	hfm1	99	61.850	ENSFALG00000001781	HFM1	66	61.850	Ficedula_albicollis
ENSGACG00000015686	hfm1	100	61.929	ENSFDAG00000020816	HFM1	64	61.929	Fukomys_damarensis
ENSGACG00000015686	hfm1	99	78.214	ENSGMOG00000017436	hfm1	100	78.214	Gadus_morhua
ENSGACG00000015686	hfm1	98	72.468	ENSGAFG00000018093	hfm1	91	75.739	Gambusia_affinis
ENSGACG00000015686	hfm1	100	62.033	ENSGGOG00000038524	HFM1	66	62.033	Gorilla_gorilla
ENSGACG00000015686	hfm1	98	76.720	ENSHBUG00000007309	hfm1	87	76.720	Haplochromis_burtoni
ENSGACG00000015686	hfm1	84	75.866	ENSHCOG00000019632	hfm1	97	75.866	Hippocampus_comes
ENSGACG00000015686	hfm1	98	67.800	ENSIPUG00000017020	hfm1	91	69.471	Ictalurus_punctatus
ENSGACG00000015686	hfm1	100	60.290	ENSJJAG00000017198	Hfm1	68	60.290	Jaculus_jaculus
ENSGACG00000015686	hfm1	93	74.668	ENSKMAG00000002282	hfm1	90	74.668	Kryptolebias_marmoratus
ENSGACG00000015686	hfm1	97	76.571	ENSLBEG00000006759	hfm1	95	80.657	Labrus_bergylta
ENSGACG00000015686	hfm1	99	62.577	ENSLACG00000010698	HFM1	91	62.474	Latimeria_chalumnae
ENSGACG00000015686	hfm1	100	67.252	ENSLOCG00000004931	hfm1	89	67.252	Lepisosteus_oculatus
ENSGACG00000015686	hfm1	69	70.616	ENSLAFG00000015903	-	85	70.616	Loxodonta_africana
ENSGACG00000015686	hfm1	100	58.974	ENSMFAG00000003649	HFM1	66	58.974	Macaca_fascicularis
ENSGACG00000015686	hfm1	100	61.920	ENSMMUG00000006819	HFM1	66	61.920	Macaca_mulatta
ENSGACG00000015686	hfm1	83	84.123	ENSMAMG00000004623	hfm1	97	80.732	Mastacembelus_armatus
ENSGACG00000015686	hfm1	98	75.238	ENSMZEG00005004679	hfm1	95	78.458	Maylandia_zebra
ENSGACG00000015686	hfm1	79	63.437	ENSMGAG00000008437	HFM1	96	63.437	Meleagris_gallopavo
ENSGACG00000015686	hfm1	99	60.146	ENSMAUG00000018858	Hfm1	66	59.917	Mesocricetus_auratus
ENSGACG00000015686	hfm1	100	61.762	ENSMICG00000037935	HFM1	66	61.762	Microcebus_murinus
ENSGACG00000015686	hfm1	99	60.669	ENSMOCG00000014812	Hfm1	67	60.436	Microtus_ochrogaster
ENSGACG00000015686	hfm1	93	76.812	ENSMMOG00000006148	hfm1	92	81.068	Mola_mola
ENSGACG00000015686	hfm1	99	76.836	ENSMALG00000002401	hfm1	94	82.317	Monopterus_albus
ENSGACG00000015686	hfm1	92	73.729	MGP_CAROLIEiJ_G0027496	Hfm1	62	73.729	Mus_caroli
ENSGACG00000015686	hfm1	100	60.350	ENSMUSG00000043410	Hfm1	66	60.350	Mus_musculus
ENSGACG00000015686	hfm1	100	60.436	MGP_PahariEiJ_G0017268	Hfm1	66	60.436	Mus_pahari
ENSGACG00000015686	hfm1	100	60.762	MGP_SPRETEiJ_G0028495	Hfm1	66	60.762	Mus_spretus
ENSGACG00000015686	hfm1	100	61.762	ENSMPUG00000004594	HFM1	64	61.762	Mustela_putorius_furo
ENSGACG00000015686	hfm1	100	61.277	ENSMLUG00000010200	HFM1	66	61.277	Myotis_lucifugus
ENSGACG00000015686	hfm1	97	75.301	ENSNBRG00000002910	hfm1	97	78.345	Neolamprologus_brichardi
ENSGACG00000015686	hfm1	100	58.660	ENSNLEG00000010285	HFM1	66	58.660	Nomascus_leucogenys
ENSGACG00000015686	hfm1	96	58.953	ENSMEUG00000015788	HFM1	61	58.953	Notamacropus_eugenii
ENSGACG00000015686	hfm1	86	59.211	ENSOPRG00000013916	HFM1	59	59.211	Ochotona_princeps
ENSGACG00000015686	hfm1	99	78.734	ENSONIG00000010590	hfm1	92	78.112	Oreochromis_niloticus
ENSGACG00000015686	hfm1	83	77.160	ENSORLG00000026844	hfm1	99	77.160	Oryzias_latipes
ENSGACG00000015686	hfm1	92	89.286	ENSORLG00020002951	hfm1	75	89.286	Oryzias_latipes_hni
ENSGACG00000015686	hfm1	99	74.059	ENSOMEG00000016474	hfm1	66	74.059	Oryzias_melastigma
ENSGACG00000015686	hfm1	100	62.319	ENSOGAG00000032369	HFM1	78	62.319	Otolemur_garnettii
ENSGACG00000015686	hfm1	99	61.707	ENSOARG00000015812	HFM1	66	61.707	Ovis_aries
ENSGACG00000015686	hfm1	100	62.526	ENSPPAG00000024582	HFM1	72	62.526	Pan_paniscus
ENSGACG00000015686	hfm1	100	61.411	ENSPPRG00000003270	HFM1	66	61.411	Panthera_pardus
ENSGACG00000015686	hfm1	100	61.515	ENSPTIG00000018881	HFM1	66	61.515	Panthera_tigris_altaica
ENSGACG00000015686	hfm1	100	62.422	ENSPTRG00000000948	HFM1	66	62.422	Pan_troglodytes
ENSGACG00000015686	hfm1	100	61.816	ENSPANG00000009838	HFM1	66	61.816	Papio_anubis
ENSGACG00000015686	hfm1	93	68.380	ENSPKIG00000003810	hfm1	94	68.681	Paramormyrops_kingsleyae
ENSGACG00000015686	hfm1	85	75.976	ENSPMGG00000011059	hfm1	100	75.976	Periophthalmus_magnuspinnatus
ENSGACG00000015686	hfm1	100	60.852	ENSPEMG00000022852	Hfm1	66	60.852	Peromyscus_maniculatus_bairdii
ENSGACG00000015686	hfm1	99	60.415	ENSPCIG00000014233	HFM1	65	60.415	Phascolarctos_cinereus
ENSGACG00000015686	hfm1	99	75.207	ENSPFOG00000017194	hfm1	92	75.207	Poecilia_formosa
ENSGACG00000015686	hfm1	99	74.017	ENSPLAG00000000571	hfm1	84	75.745	Poecilia_latipinna
ENSGACG00000015686	hfm1	97	75.745	ENSPMEG00000019475	hfm1	85	75.745	Poecilia_mexicana
ENSGACG00000015686	hfm1	98	74.605	ENSPREG00000007803	hfm1	91	75.709	Poecilia_reticulata
ENSGACG00000015686	hfm1	100	62.215	ENSPPYG00000001163	HFM1	66	62.215	Pongo_abelii
ENSGACG00000015686	hfm1	99	56.979	ENSPVAG00000009713	HFM1	68	56.979	Pteropus_vampyrus
ENSGACG00000015686	hfm1	98	75.026	ENSPNYG00000001795	hfm1	95	78.335	Pundamilia_nyererei
ENSGACG00000015686	hfm1	86	69.820	ENSPNAG00000010865	hfm1	83	69.820	Pygocentrus_nattereri
ENSGACG00000015686	hfm1	99	60.666	ENSRNOG00000023299	Hfm1	66	60.666	Rattus_norvegicus
ENSGACG00000015686	hfm1	100	62.126	ENSRROG00000045569	HFM1	66	62.126	Rhinopithecus_roxellana
ENSGACG00000015686	hfm1	100	61.618	ENSSBOG00000027456	HFM1	68	61.618	Saimiri_boliviensis_boliviensis
ENSGACG00000015686	hfm1	64	69.426	ENSSHAG00000014616	-	67	69.426	Sarcophilus_harrisii
ENSGACG00000015686	hfm1	100	68.814	ENSSFOG00015020129	hfm1	65	68.814	Scleropages_formosus
ENSGACG00000015686	hfm1	93	80.111	ENSSMAG00000006907	hfm1	87	80.111	Scophthalmus_maximus
ENSGACG00000015686	hfm1	85	81.675	ENSSDUG00000011424	hfm1	93	81.675	Seriola_dumerili
ENSGACG00000015686	hfm1	85	81.697	ENSSLDG00000016386	hfm1	92	81.697	Seriola_lalandi_dorsalis
ENSGACG00000015686	hfm1	95	72.993	ENSSPAG00000001023	hfm1	93	80.825	Stegastes_partitus
ENSGACG00000015686	hfm1	100	62.062	ENSSSCG00000006912	HFM1	70	62.062	Sus_scrofa
ENSGACG00000015686	hfm1	99	61.394	ENSTGUG00000006172	HFM1	99	61.394	Taeniopygia_guttata
ENSGACG00000015686	hfm1	51	83.441	ENSTNIG00000006962	hfm1	96	83.441	Tetraodon_nigroviridis
ENSGACG00000015686	hfm1	100	61.994	ENSTTRG00000013933	HFM1	67	61.994	Tursiops_truncatus
ENSGACG00000015686	hfm1	100	59.462	ENSVPAG00000011331	HFM1	66	59.462	Vicugna_pacos
ENSGACG00000015686	hfm1	98	60.190	ENSVVUG00000020760	HFM1	90	60.190	Vulpes_vulpes
ENSGACG00000015686	hfm1	84	76.326	ENSXMAG00000004178	hfm1	90	76.326	Xiphophorus_maculatus