EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000016223 (Gene tree)
Gene ID: -
Gene Symbol: rbm47
Alias: si:ch211-241e15.2|wu:fj94a03
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 5169 bases
Position: chrgroupIX:2037945-2043113
Accession: ZDB-GENE-030131-9612
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000021406	RRM_5	PF13893.6	2.4e-06	1	1
ENSGACP00000021405	RRM_5	PF13893.6	3.5e-06	1	1
ENSGACP00000021406	RRM_1	PF00076.22	7.2e-40	1	3
ENSGACP00000021406	RRM_1	PF00076.22	7.2e-40	2	3
ENSGACP00000021406	RRM_1	PF00076.22	7.2e-40	3	3
ENSGACP00000021405	RRM_1	PF00076.22	1.2e-39	1	3
ENSGACP00000021405	RRM_1	PF00076.22	1.2e-39	2	3
ENSGACP00000021405	RRM_1	PF00076.22	1.2e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000021446	-	1818	-	ENSGACP00000021405	605 (aa)	-	G3PUW8
ENSGACT00000021447	-	1608	-	ENSGACP00000021406	535 (aa)	-	G3PUW9

Gene Model

Click here to download ENSGACG00000016223's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000016223's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000016223	rbm47	56	50.831	ENSGACG00000011665	syncrip	64	46.277
ENSGACG00000016223	rbm47	58	69.156	ENSGACG00000010241	a1cf	86	51.321
ENSGACG00000016223	rbm47	57	53.094	ENSGACG00000003202	hnrnpr	67	45.519
ENSGACG00000016223	rbm47	56	52.492	ENSGACG00000009124	syncripl	71	46.305

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000016223	rbm47	94	83.427	ENSG00000163694	RBM47	100	80.000	Homo_sapiens
ENSGACG00000016223	rbm47	100	94.344	ENSAPOG00000011062	rbm47	100	94.344	Acanthochromis_polyacanthus
ENSGACG00000016223	rbm47	93	82.535	ENSAMEG00000009672	RBM47	100	73.096	Ailuropoda_melanoleuca
ENSGACG00000016223	rbm47	100	89.638	ENSACIG00000011531	rbm47	100	89.638	Amphilophus_citrinellus
ENSGACG00000016223	rbm47	100	94.087	ENSAOCG00000022245	rbm47	100	94.087	Amphiprion_ocellaris
ENSGACG00000016223	rbm47	100	94.087	ENSAPEG00000018304	rbm47	100	94.087	Amphiprion_percula
ENSGACG00000016223	rbm47	100	92.802	ENSATEG00000018400	rbm47	100	91.269	Anabas_testudineus
ENSGACG00000016223	rbm47	100	74.392	ENSAPLG00000013974	RBM47	100	74.230	Anas_platyrhynchos
ENSGACG00000016223	rbm47	100	77.238	ENSACAG00000011833	RBM47	100	73.333	Anolis_carolinensis
ENSGACG00000016223	rbm47	100	78.718	ENSANAG00000029440	RBM47	100	79.487	Aotus_nancymaae
ENSGACG00000016223	rbm47	100	90.746	ENSACLG00000016902	rbm47	99	90.746	Astatotilapia_calliptera
ENSGACG00000016223	rbm47	100	83.632	ENSAMXG00000021794	rbm47	100	80.556	Astyanax_mexicanus
ENSGACG00000016223	rbm47	100	78.571	ENSBTAG00000002356	RBM47	100	74.183	Bos_taurus
ENSGACG00000016223	rbm47	94	83.146	ENSCJAG00000019385	RBM47	100	79.487	Callithrix_jacchus
ENSGACG00000016223	rbm47	93	81.586	ENSCAFG00000015898	RBM47	100	73.529	Canis_familiaris
ENSGACG00000016223	rbm47	77	81.586	ENSCAFG00020010558	RBM47	94	78.772	Canis_lupus_dingo
ENSGACG00000016223	rbm47	100	78.571	ENSCHIG00000026214	RBM47	100	74.183	Capra_hircus
ENSGACG00000016223	rbm47	68	89.041	ENSTSYG00000033612	RBM47	93	65.625	Carlito_syrichta
ENSGACG00000016223	rbm47	100	72.051	ENSCAPG00000008426	RBM47	100	69.885	Cavia_aperea
ENSGACG00000016223	rbm47	100	79.284	ENSCPOG00000014100	RBM47	100	75.000	Cavia_porcellus
ENSGACG00000016223	rbm47	99	53.695	ENSCCAG00000024397	-	99	52.874	Cebus_capucinus
ENSGACG00000016223	rbm47	100	79.487	ENSCCAG00000030129	-	100	79.487	Cebus_capucinus
ENSGACG00000016223	rbm47	94	83.427	ENSCATG00000042064	RBM47	100	80.000	Cercocebus_atys
ENSGACG00000016223	rbm47	94	83.799	ENSCLAG00000001684	RBM47	100	79.847	Chinchilla_lanigera
ENSGACG00000016223	rbm47	93	83.898	ENSCSAG00000017060	RBM47	100	74.104	Chlorocebus_sabaeus
ENSGACG00000016223	rbm47	73	85.948	ENSCHOG00000011731	RBM47	88	73.913	Choloepus_hoffmanni
ENSGACG00000016223	rbm47	100	80.357	ENSCPBG00000013831	RBM47	100	75.244	Chrysemys_picta_bellii
ENSGACG00000016223	rbm47	94	83.146	ENSCANG00000019997	RBM47	100	79.744	Colobus_angolensis_palliatus
ENSGACG00000016223	rbm47	100	73.537	ENSCGRG00001020102	-	98	78.142	Cricetulus_griseus_chok1gshd
ENSGACG00000016223	rbm47	100	78.827	ENSCGRG00001000623	-	98	83.014	Cricetulus_griseus_chok1gshd
ENSGACG00000016223	rbm47	96	76.503	ENSCGRG00000014760	-	98	78.142	Cricetulus_griseus_crigri
ENSGACG00000016223	rbm47	95	80.376	ENSCGRG00000007762	-	93	81.633	Cricetulus_griseus_crigri
ENSGACG00000016223	rbm47	93	91.785	ENSCSEG00000004545	rbm47	100	86.207	Cynoglossus_semilaevis
ENSGACG00000016223	rbm47	100	90.746	ENSCVAG00000020144	rbm47	100	90.746	Cyprinodon_variegatus
ENSGACG00000016223	rbm47	100	83.417	ENSDARG00000061985	rbm47	100	80.984	Danio_rerio
ENSGACG00000016223	rbm47	93	83.989	ENSDNOG00000046854	RBM47	100	74.056	Dasypus_novemcinctus
ENSGACG00000016223	rbm47	100	78.734	ENSDORG00000010144	Rbm47	100	73.786	Dipodomys_ordii
ENSGACG00000016223	rbm47	93	81.564	ENSETEG00000009194	RBM47	100	73.864	Echinops_telfairi
ENSGACG00000016223	rbm47	90	73.977	ENSEBUG00000011912	rbm47	82	73.977	Eptatretus_burgeri
ENSGACG00000016223	rbm47	93	83.708	ENSEASG00005008443	RBM47	100	74.020	Equus_asinus_asinus
ENSGACG00000016223	rbm47	93	83.708	ENSECAG00000004400	RBM47	100	74.020	Equus_caballus
ENSGACG00000016223	rbm47	70	86.190	ENSEEUG00000001194	RBM47	75	78.455	Erinaceus_europaeus
ENSGACG00000016223	rbm47	100	88.608	ENSELUG00000006148	rbm47	100	88.413	Esox_lucius
ENSGACG00000016223	rbm47	93	82.535	ENSFCAG00000012399	RBM47	100	74.590	Felis_catus
ENSGACG00000016223	rbm47	100	79.337	ENSFALG00000002861	RBM47	100	75.244	Ficedula_albicollis
ENSGACG00000016223	rbm47	100	77.749	ENSFDAG00000016326	RBM47	100	77.749	Fukomys_damarensis
ENSGACG00000016223	rbm47	100	89.460	ENSFHEG00000007938	rbm47	100	86.964	Fundulus_heteroclitus
ENSGACG00000016223	rbm47	100	86.802	ENSGMOG00000014802	rbm47	100	81.877	Gadus_morhua
ENSGACG00000016223	rbm47	73	79.898	ENSGALG00000014267	RBM47	99	80.662	Gallus_gallus
ENSGACG00000016223	rbm47	73	86.375	ENSGAFG00000020571	rbm47	98	86.375	Gambusia_affinis
ENSGACG00000016223	rbm47	100	80.102	ENSGAGG00000020051	RBM47	100	75.081	Gopherus_agassizii
ENSGACG00000016223	rbm47	94	83.427	ENSGGOG00000001367	RBM47	100	80.000	Gorilla_gorilla
ENSGACG00000016223	rbm47	100	90.746	ENSHBUG00000003520	rbm47	100	89.414	Haplochromis_burtoni
ENSGACG00000016223	rbm47	100	58.780	ENSHGLG00000016914	RBM47	100	74.138	Heterocephalus_glaber_female
ENSGACG00000016223	rbm47	100	79.284	ENSHGLG00100014028	-	100	79.284	Heterocephalus_glaber_male
ENSGACG00000016223	rbm47	100	75.192	ENSHGLG00100003071	-	100	66.448	Heterocephalus_glaber_male
ENSGACG00000016223	rbm47	99	89.691	ENSHCOG00000002074	rbm47	99	89.681	Hippocampus_comes
ENSGACG00000016223	rbm47	100	85.604	ENSIPUG00000004743	rbm47	100	81.579	Ictalurus_punctatus
ENSGACG00000016223	rbm47	93	82.817	ENSSTOG00000004727	RBM47	100	80.307	Ictidomys_tridecemlineatus
ENSGACG00000016223	rbm47	93	84.225	ENSJJAG00000013823	Rbm47	100	73.659	Jaculus_jaculus
ENSGACG00000016223	rbm47	100	90.769	ENSKMAG00000000084	rbm47	100	90.769	Kryptolebias_marmoratus
ENSGACG00000016223	rbm47	100	92.526	ENSLBEG00000008436	rbm47	100	91.584	Labrus_bergylta
ENSGACG00000016223	rbm47	93	85.112	ENSLACG00000007196	RBM47	100	75.410	Latimeria_chalumnae
ENSGACG00000016223	rbm47	94	83.217	ENSLOCG00000012966	rbm47	95	78.748	Lepisosteus_oculatus
ENSGACG00000016223	rbm47	100	76.982	ENSLAFG00000011998	RBM47	100	73.453	Loxodonta_africana
ENSGACG00000016223	rbm47	94	83.427	ENSMFAG00000037967	RBM47	100	80.000	Macaca_fascicularis
ENSGACG00000016223	rbm47	93	83.898	ENSMMUG00000012036	RBM47	100	77.033	Macaca_mulatta
ENSGACG00000016223	rbm47	94	83.427	ENSMNEG00000040774	RBM47	100	80.000	Macaca_nemestrina
ENSGACG00000016223	rbm47	94	86.054	ENSMLEG00000041432	RBM47	100	81.269	Mandrillus_leucophaeus
ENSGACG00000016223	rbm47	100	92.545	ENSMAMG00000019143	rbm47	99	92.545	Mastacembelus_armatus
ENSGACG00000016223	rbm47	100	90.746	ENSMZEG00005023659	rbm47	99	90.746	Maylandia_zebra
ENSGACG00000016223	rbm47	100	79.847	ENSMGAG00000012226	RBM47	100	75.487	Meleagris_gallopavo
ENSGACG00000016223	rbm47	100	78.372	ENSMAUG00000006493	Rbm47	100	78.626	Mesocricetus_auratus
ENSGACG00000016223	rbm47	94	80.966	ENSMICG00000026417	RBM47	100	78.974	Microcebus_murinus
ENSGACG00000016223	rbm47	100	78.316	ENSMOCG00000021170	Rbm47	100	79.082	Microtus_ochrogaster
ENSGACG00000016223	rbm47	100	92.010	ENSMMOG00000007260	rbm47	100	90.264	Mola_mola
ENSGACG00000016223	rbm47	100	74.939	ENSMODG00000020561	-	100	69.951	Monodelphis_domestica
ENSGACG00000016223	rbm47	58	76.101	ENSMODG00000015426	-	98	76.101	Monodelphis_domestica
ENSGACG00000016223	rbm47	100	81.122	ENSMODG00000007003	RBM47	100	74.919	Monodelphis_domestica
ENSGACG00000016223	rbm47	100	91.774	ENSMALG00000005167	rbm47	100	91.774	Monopterus_albus
ENSGACG00000016223	rbm47	100	77.296	MGP_CAROLIEiJ_G0027258	Rbm47	100	78.061	Mus_caroli
ENSGACG00000016223	rbm47	100	77.296	ENSMUSG00000070780	Rbm47	100	78.061	Mus_musculus
ENSGACG00000016223	rbm47	100	77.551	MGP_PahariEiJ_G0017040	Rbm47	100	78.316	Mus_pahari
ENSGACG00000016223	rbm47	100	77.296	MGP_SPRETEiJ_G0028253	Rbm47	100	78.061	Mus_spretus
ENSGACG00000016223	rbm47	93	83.380	ENSMPUG00000006177	RBM47	94	73.290	Mustela_putorius_furo
ENSGACG00000016223	rbm47	100	79.389	ENSMLUG00000000889	RBM47	100	74.346	Myotis_lucifugus
ENSGACG00000016223	rbm47	100	78.571	ENSNGAG00000003325	Rbm47	100	73.052	Nannospalax_galili
ENSGACG00000016223	rbm47	100	90.746	ENSNBRG00000015092	rbm47	100	89.396	Neolamprologus_brichardi
ENSGACG00000016223	rbm47	94	83.427	ENSNLEG00000017151	RBM47	100	80.000	Nomascus_leucogenys
ENSGACG00000016223	rbm47	66	86.479	ENSMEUG00000009516	-	98	79.481	Notamacropus_eugenii
ENSGACG00000016223	rbm47	86	84.167	ENSOPRG00000016507	-	75	84.167	Ochotona_princeps
ENSGACG00000016223	rbm47	93	82.817	ENSODEG00000004873	RBM47	100	74.632	Octodon_degus
ENSGACG00000016223	rbm47	100	89.984	ENSONIG00000009061	rbm47	100	89.984	Oreochromis_niloticus
ENSGACG00000016223	rbm47	100	78.947	ENSOANG00000008978	RBM47	100	74.877	Ornithorhynchus_anatinus
ENSGACG00000016223	rbm47	100	78.772	ENSOCUG00000012034	RBM47	100	74.304	Oryctolagus_cuniculus
ENSGACG00000016223	rbm47	100	91.026	ENSORLG00000005847	rbm47	100	88.633	Oryzias_latipes
ENSGACG00000016223	rbm47	100	91.026	ENSORLG00020005154	rbm47	100	88.797	Oryzias_latipes_hni
ENSGACG00000016223	rbm47	100	91.282	ENSORLG00015000066	rbm47	100	89.127	Oryzias_latipes_hsok
ENSGACG00000016223	rbm47	100	91.260	ENSOMEG00000010730	rbm47	100	89.439	Oryzias_melastigma
ENSGACG00000016223	rbm47	93	83.380	ENSOGAG00000029367	-	100	73.779	Otolemur_garnettii
ENSGACG00000016223	rbm47	93	77.746	ENSOGAG00000025193	-	100	68.689	Otolemur_garnettii
ENSGACG00000016223	rbm47	100	67.602	ENSOARG00000012711	RBM47	100	66.503	Ovis_aries
ENSGACG00000016223	rbm47	93	83.898	ENSPPAG00000029763	RBM47	95	80.000	Pan_paniscus
ENSGACG00000016223	rbm47	94	83.008	ENSPPRG00000012873	RBM47	100	79.284	Panthera_pardus
ENSGACG00000016223	rbm47	83	75.348	ENSPTIG00000017046	RBM47	100	74.155	Panthera_tigris_altaica
ENSGACG00000016223	rbm47	94	83.427	ENSPTRG00000016006	RBM47	100	80.000	Pan_troglodytes
ENSGACG00000016223	rbm47	94	83.427	ENSPANG00000005980	RBM47	100	80.000	Papio_anubis
ENSGACG00000016223	rbm47	93	87.288	ENSPKIG00000005037	rbm47	100	76.316	Paramormyrops_kingsleyae
ENSGACG00000016223	rbm47	100	77.778	ENSPKIG00000013431	RBM47	98	77.449	Paramormyrops_kingsleyae
ENSGACG00000016223	rbm47	87	80.102	ENSPSIG00000017516	RBM47	97	76.881	Pelodiscus_sinensis
ENSGACG00000016223	rbm47	93	94.269	ENSPMGG00000018540	rbm47	100	87.769	Periophthalmus_magnuspinnatus
ENSGACG00000016223	rbm47	100	78.061	ENSPEMG00000011088	Rbm47	100	78.827	Peromyscus_maniculatus_bairdii
ENSGACG00000016223	rbm47	100	87.879	ENSPFOG00000007997	rbm47	100	86.438	Poecilia_formosa
ENSGACG00000016223	rbm47	100	87.879	ENSPLAG00000002072	rbm47	100	86.579	Poecilia_latipinna
ENSGACG00000016223	rbm47	100	89.203	ENSPMEG00000017492	rbm47	100	89.203	Poecilia_mexicana
ENSGACG00000016223	rbm47	100	89.460	ENSPREG00000008456	rbm47	100	89.460	Poecilia_reticulata
ENSGACG00000016223	rbm47	93	73.669	ENSPPYG00000014688	RBM47	98	66.724	Pongo_abelii
ENSGACG00000016223	rbm47	89	75.879	ENSPCAG00000011879	RBM47	81	78.846	Procavia_capensis
ENSGACG00000016223	rbm47	94	83.099	ENSPCOG00000023451	RBM47	100	79.540	Propithecus_coquereli
ENSGACG00000016223	rbm47	93	82.073	ENSPVAG00000003812	RBM47	100	72.683	Pteropus_vampyrus
ENSGACG00000016223	rbm47	100	90.746	ENSPNYG00000022868	rbm47	100	89.268	Pundamilia_nyererei
ENSGACG00000016223	rbm47	100	84.439	ENSPNAG00000007940	rbm47	100	81.403	Pygocentrus_nattereri
ENSGACG00000016223	rbm47	100	77.665	ENSRNOG00000002408	Rbm47	100	73.290	Rattus_norvegicus
ENSGACG00000016223	rbm47	94	83.146	ENSRBIG00000039601	RBM47	100	79.744	Rhinopithecus_bieti
ENSGACG00000016223	rbm47	94	83.146	ENSRROG00000044696	RBM47	100	79.744	Rhinopithecus_roxellana
ENSGACG00000016223	rbm47	100	71.664	ENSSBOG00000028475	RBM47	100	77.000	Saimiri_boliviensis_boliviensis
ENSGACG00000016223	rbm47	100	80.102	ENSSHAG00000017576	RBM47	100	74.020	Sarcophilus_harrisii
ENSGACG00000016223	rbm47	100	77.138	ENSSFOG00015012445	rbm47	100	76.393	Scleropages_formosus
ENSGACG00000016223	rbm47	95	79.239	ENSSFOG00015024101	RBM47	97	78.374	Scleropages_formosus
ENSGACG00000016223	rbm47	100	91.774	ENSSMAG00000009744	rbm47	100	91.774	Scophthalmus_maximus
ENSGACG00000016223	rbm47	100	92.112	ENSSDUG00000022684	rbm47	100	91.653	Seriola_dumerili
ENSGACG00000016223	rbm47	100	91.858	ENSSLDG00000003109	rbm47	100	91.858	Seriola_lalandi_dorsalis
ENSGACG00000016223	rbm47	85	76.660	ENSSARG00000001735	RBM47	75	78.587	Sorex_araneus
ENSGACG00000016223	rbm47	100	78.974	ENSSPUG00000007515	RBM47	100	78.571	Sphenodon_punctatus
ENSGACG00000016223	rbm47	100	94.087	ENSSPAG00000001257	rbm47	100	94.087	Stegastes_partitus
ENSGACG00000016223	rbm47	94	82.961	ENSSSCG00000008796	RBM47	100	74.020	Sus_scrofa
ENSGACG00000016223	rbm47	100	79.494	ENSTGUG00000008705	RBM47	100	75.000	Taeniopygia_guttata
ENSGACG00000016223	rbm47	100	86.340	ENSTRUG00000014050	rbm47	100	85.289	Takifugu_rubripes
ENSGACG00000016223	rbm47	100	90.206	ENSTNIG00000006127	rbm47	100	88.595	Tetraodon_nigroviridis
ENSGACG00000016223	rbm47	81	81.073	ENSTBEG00000001607	RBM47	76	76.923	Tupaia_belangeri
ENSGACG00000016223	rbm47	93	83.708	ENSTTRG00000002839	RBM47	100	74.426	Tursiops_truncatus
ENSGACG00000016223	rbm47	93	82.535	ENSUAMG00000021346	RBM47	100	73.941	Ursus_americanus
ENSGACG00000016223	rbm47	52	80.952	ENSVPAG00000000641	-	56	70.807	Vicugna_pacos
ENSGACG00000016223	rbm47	93	83.569	ENSVVUG00000014774	RBM47	100	73.486	Vulpes_vulpes
ENSGACG00000016223	rbm47	100	79.442	ENSXETG00000012802	rbm47	100	73.941	Xenopus_tropicalis
ENSGACG00000016223	rbm47	100	85.158	ENSXCOG00000000780	rbm47	100	86.375	Xiphophorus_couchianus
ENSGACG00000016223	rbm47	100	89.460	ENSXMAG00000009874	rbm47	100	89.460	Xiphophorus_maculatus