EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000016607 (Gene tree)
Gene ID: -
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 3392 bases
Position: chrgroupIX:4607221-4610612
Accession: ZDB-GENE-030131-6146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000021925	PPR	PF01535.20	1.6e-16	1	2
ENSGACP00000021925	PPR	PF01535.20	1.6e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000021966	-	2049	-	ENSGACP00000021925	641 (aa)	-	G3PWD6

Gene Model

Click here to download ENSGACG00000016607's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000016607's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000016607	ptcd1	89	49.744	ENSG00000248919	ATP5MF-PTCD1	80	48.849	Homo_sapiens
ENSGACG00000016607	ptcd1	89	49.744	ENSG00000106246	PTCD1	86	48.849	Homo_sapiens
ENSGACG00000016607	ptcd1	86	70.072	ENSAPOG00000010679	ptcd1	86	70.072	Acanthochromis_polyacanthus
ENSGACG00000016607	ptcd1	93	48.889	ENSAMEG00000006224	-	82	48.276	Ailuropoda_melanoleuca
ENSGACG00000016607	ptcd1	91	73.973	ENSACIG00000017861	ptcd1	85	73.973	Amphilophus_citrinellus
ENSGACG00000016607	ptcd1	87	71.048	ENSAOCG00000022617	ptcd1	84	71.048	Amphiprion_ocellaris
ENSGACG00000016607	ptcd1	99	69.147	ENSAOCG00000020741	-	90	69.147	Amphiprion_ocellaris
ENSGACG00000016607	ptcd1	99	69.147	ENSAPEG00000022632	ptcd1	90	69.147	Amphiprion_percula
ENSGACG00000016607	ptcd1	98	70.223	ENSATEG00000007016	ptcd1	88	70.906	Anabas_testudineus
ENSGACG00000016607	ptcd1	88	50.085	ENSAPLG00000006862	-	91	50.085	Anas_platyrhynchos
ENSGACG00000016607	ptcd1	93	46.948	ENSACAG00000012871	-	82	46.417	Anolis_carolinensis
ENSGACG00000016607	ptcd1	92	48.226	ENSANAG00000035790	-	88	48.689	Aotus_nancymaae
ENSGACG00000016607	ptcd1	99	70.781	ENSACLG00000002824	ptcd1	89	70.781	Astatotilapia_calliptera
ENSGACG00000016607	ptcd1	97	50.075	ENSAMXG00000037292	ptcd1	93	50.000	Astyanax_mexicanus
ENSGACG00000016607	ptcd1	91	49.752	ENSBTAG00000020440	-	74	49.513	Bos_taurus
ENSGACG00000016607	ptcd1	89	50.424	ENSCJAG00000015815	-	83	50.424	Callithrix_jacchus
ENSGACG00000016607	ptcd1	90	49.833	ENSCAFG00000015055	-	79	49.251	Canis_familiaris
ENSGACG00000016607	ptcd1	90	49.833	ENSCAFG00020014480	-	79	49.251	Canis_lupus_dingo
ENSGACG00000016607	ptcd1	91	50.580	ENSCHIG00000027000	-	85	50.912	Capra_hircus
ENSGACG00000016607	ptcd1	91	47.769	ENSTSYG00000029495	-	85	47.674	Carlito_syrichta
ENSGACG00000016607	ptcd1	91	47.627	ENSCAPG00000014660	-	91	47.627	Cavia_aperea
ENSGACG00000016607	ptcd1	91	48.282	ENSCPOG00000001780	-	85	48.282	Cavia_porcellus
ENSGACG00000016607	ptcd1	92	49.191	ENSCCAG00000034025	-	86	48.936	Cebus_capucinus
ENSGACG00000016607	ptcd1	91	48.534	ENSCATG00000040859	-	87	48.697	Cercocebus_atys
ENSGACG00000016607	ptcd1	91	48.214	ENSCLAG00000006354	-	85	49.013	Chinchilla_lanigera
ENSGACG00000016607	ptcd1	84	49.195	ENSCSAG00000017794	-	85	48.537	Chlorocebus_sabaeus
ENSGACG00000016607	ptcd1	94	46.646	ENSCPBG00000020866	-	82	48.445	Chrysemys_picta_bellii
ENSGACG00000016607	ptcd1	93	48.019	ENSCANG00000023441	-	89	48.336	Colobus_angolensis_palliatus
ENSGACG00000016607	ptcd1	89	48.833	ENSCGRG00001023686	Ptcd1	84	49.161	Cricetulus_griseus_chok1gshd
ENSGACG00000016607	ptcd1	89	48.990	ENSCGRG00000015031	Ptcd1	83	49.161	Cricetulus_griseus_crigri
ENSGACG00000016607	ptcd1	96	61.830	ENSCSEG00000002378	ptcd1	88	61.830	Cynoglossus_semilaevis
ENSGACG00000016607	ptcd1	98	71.451	ENSCVAG00000015826	ptcd1	89	71.451	Cyprinodon_variegatus
ENSGACG00000016607	ptcd1	90	72.318	ENSCVAG00000003621	ptcd1	87	72.348	Cyprinodon_variegatus
ENSGACG00000016607	ptcd1	95	53.061	ENSDARG00000076176	ptcd1	91	53.061	Danio_rerio
ENSGACG00000016607	ptcd1	89	50.000	ENSDNOG00000009957	-	85	50.166	Dasypus_novemcinctus
ENSGACG00000016607	ptcd1	91	47.798	ENSDORG00000000740	Ptcd1	87	47.240	Dipodomys_ordii
ENSGACG00000016607	ptcd1	74	50.347	ENSEBUG00000014515	ptcd1	66	54.639	Eptatretus_burgeri
ENSGACG00000016607	ptcd1	91	49.423	ENSEASG00005002480	-	85	49.917	Equus_asinus_asinus
ENSGACG00000016607	ptcd1	91	49.423	ENSECAG00000016617	-	85	50.165	Equus_caballus
ENSGACG00000016607	ptcd1	97	57.014	ENSELUG00000016517	ptcd1	89	57.014	Esox_lucius
ENSGACG00000016607	ptcd1	91	48.796	ENSFCAG00000015069	-	87	48.341	Felis_catus
ENSGACG00000016607	ptcd1	92	47.910	ENSFALG00000013803	-	86	48.387	Ficedula_albicollis
ENSGACG00000016607	ptcd1	88	49.241	ENSFDAG00000006393	-	86	48.450	Fukomys_damarensis
ENSGACG00000016607	ptcd1	86	72.401	ENSFHEG00000012491	ptcd1	96	72.401	Fundulus_heteroclitus
ENSGACG00000016607	ptcd1	96	63.124	ENSGMOG00000007639	ptcd1	99	63.124	Gadus_morhua
ENSGACG00000016607	ptcd1	88	48.000	ENSGALG00000004711	-	83	48.500	Gallus_gallus
ENSGACG00000016607	ptcd1	97	67.823	ENSGAFG00000013175	ptcd1	90	67.773	Gambusia_affinis
ENSGACG00000016607	ptcd1	85	48.772	ENSGAGG00000021832	-	85	48.294	Gopherus_agassizii
ENSGACG00000016607	ptcd1	89	49.574	ENSGGOG00000015123	-	86	48.684	Gorilla_gorilla
ENSGACG00000016607	ptcd1	99	70.423	ENSHBUG00000018275	ptcd1	89	70.423	Haplochromis_burtoni
ENSGACG00000016607	ptcd1	91	50.163	ENSHGLG00000017621	-	85	50.163	Heterocephalus_glaber_female
ENSGACG00000016607	ptcd1	91	50.163	ENSHGLG00100007218	-	85	50.163	Heterocephalus_glaber_male
ENSGACG00000016607	ptcd1	95	64.484	ENSHCOG00000010784	ptcd1	87	64.484	Hippocampus_comes
ENSGACG00000016607	ptcd1	93	48.562	ENSSTOG00000001682	-	87	48.237	Ictidomys_tridecemlineatus
ENSGACG00000016607	ptcd1	94	47.468	ENSJJAG00000000319	Ptcd1	89	47.284	Jaculus_jaculus
ENSGACG00000016607	ptcd1	97	69.206	ENSKMAG00000008708	ptcd1	90	68.331	Kryptolebias_marmoratus
ENSGACG00000016607	ptcd1	99	70.807	ENSLBEG00000008061	ptcd1	89	70.918	Labrus_bergylta
ENSGACG00000016607	ptcd1	90	50.082	ENSLACG00000011172	ptcd1	84	50.246	Latimeria_chalumnae
ENSGACG00000016607	ptcd1	89	53.028	ENSLOCG00000004833	ptcd1	91	51.783	Lepisosteus_oculatus
ENSGACG00000016607	ptcd1	91	49.094	ENSLAFG00000002588	-	88	47.393	Loxodonta_africana
ENSGACG00000016607	ptcd1	91	48.534	ENSMFAG00000041324	-	87	48.697	Macaca_fascicularis
ENSGACG00000016607	ptcd1	91	48.371	ENSMMUG00000030408	-	87	48.534	Macaca_mulatta
ENSGACG00000016607	ptcd1	91	48.534	ENSMNEG00000043786	-	87	48.697	Macaca_nemestrina
ENSGACG00000016607	ptcd1	91	36.634	ENSMLEG00000031179	-	85	38.119	Mandrillus_leucophaeus
ENSGACG00000016607	ptcd1	99	69.410	ENSMAMG00000007623	ptcd1	88	69.410	Mastacembelus_armatus
ENSGACG00000016607	ptcd1	99	70.625	ENSMZEG00005012722	ptcd1	89	70.625	Maylandia_zebra
ENSGACG00000016607	ptcd1	90	49.097	ENSMGAG00000004211	-	80	49.097	Meleagris_gallopavo
ENSGACG00000016607	ptcd1	91	46.242	ENSMICG00000017428	-	85	47.438	Microcebus_murinus
ENSGACG00000016607	ptcd1	98	72.627	ENSMMOG00000020243	ptcd1	91	73.854	Mola_mola
ENSGACG00000016607	ptcd1	94	45.879	ENSMODG00000001350	-	86	45.723	Monodelphis_domestica
ENSGACG00000016607	ptcd1	99	70.093	ENSMALG00000018442	ptcd1	89	70.295	Monopterus_albus
ENSGACG00000016607	ptcd1	89	49.153	MGP_CAROLIEiJ_G0028011	Ptcd1	84	49.408	Mus_caroli
ENSGACG00000016607	ptcd1	89	48.983	ENSMUSG00000029624	Ptcd1	84	49.747	Mus_musculus
ENSGACG00000016607	ptcd1	89	49.408	MGP_PahariEiJ_G0024580	Ptcd1	84	48.667	Mus_pahari
ENSGACG00000016607	ptcd1	89	47.746	MGP_SPRETEiJ_G0029012	Ptcd1	84	49.239	Mus_spretus
ENSGACG00000016607	ptcd1	93	48.083	ENSMPUG00000016518	-	89	48.889	Mustela_putorius_furo
ENSGACG00000016607	ptcd1	91	49.918	ENSMLUG00000010994	-	80	49.353	Myotis_lucifugus
ENSGACG00000016607	ptcd1	97	68.000	ENSNBRG00000010079	ptcd1	85	71.380	Neolamprologus_brichardi
ENSGACG00000016607	ptcd1	81	47.027	ENSNLEG00000011060	-	92	47.027	Nomascus_leucogenys
ENSGACG00000016607	ptcd1	90	47.525	ENSMEUG00000006930	-	85	47.185	Notamacropus_eugenii
ENSGACG00000016607	ptcd1	82	53.968	ENSOPRG00000013647	-	79	53.968	Ochotona_princeps
ENSGACG00000016607	ptcd1	93	68.771	ENSONIG00000003168	ptcd1	99	68.771	Oreochromis_niloticus
ENSGACG00000016607	ptcd1	84	48.936	ENSOANG00000007728	-	73	48.936	Ornithorhynchus_anatinus
ENSGACG00000016607	ptcd1	91	50.250	ENSOCUG00000010584	-	83	50.250	Oryctolagus_cuniculus
ENSGACG00000016607	ptcd1	93	69.449	ENSORLG00000009275	ptcd1	87	69.449	Oryzias_latipes
ENSGACG00000016607	ptcd1	93	69.449	ENSORLG00020000988	ptcd1	87	69.449	Oryzias_latipes_hni
ENSGACG00000016607	ptcd1	93	68.781	ENSORLG00015010557	ptcd1	87	68.781	Oryzias_latipes_hsok
ENSGACG00000016607	ptcd1	95	68.679	ENSOMEG00000020627	ptcd1	91	68.679	Oryzias_melastigma
ENSGACG00000016607	ptcd1	91	46.906	ENSOGAG00000010877	-	86	47.368	Otolemur_garnettii
ENSGACG00000016607	ptcd1	91	45.827	ENSOARG00000018676	-	85	46.154	Ovis_aries
ENSGACG00000016607	ptcd1	89	49.404	ENSPPAG00000036024	-	86	48.520	Pan_paniscus
ENSGACG00000016607	ptcd1	91	48.796	ENSPPRG00000003478	-	88	48.341	Panthera_pardus
ENSGACG00000016607	ptcd1	90	48.748	ENSPTRG00000019452	-	86	48.684	Pan_troglodytes
ENSGACG00000016607	ptcd1	91	48.697	ENSPANG00000016730	-	87	48.860	Papio_anubis
ENSGACG00000016607	ptcd1	88	52.830	ENSPKIG00000014215	ptcd1	84	52.830	Paramormyrops_kingsleyae
ENSGACG00000016607	ptcd1	88	47.878	ENSPSIG00000011184	-	98	48.459	Pelodiscus_sinensis
ENSGACG00000016607	ptcd1	78	42.418	ENSPMAG00000009667	ptcd1	100	42.418	Petromyzon_marinus
ENSGACG00000016607	ptcd1	94	46.345	ENSPCIG00000024778	-	86	46.345	Phascolarctos_cinereus
ENSGACG00000016607	ptcd1	97	67.035	ENSPFOG00000004458	ptcd1	90	67.141	Poecilia_formosa
ENSGACG00000016607	ptcd1	97	67.350	ENSPLAG00000011051	ptcd1	90	67.453	Poecilia_latipinna
ENSGACG00000016607	ptcd1	97	67.035	ENSPMEG00000020547	ptcd1	90	66.983	Poecilia_mexicana
ENSGACG00000016607	ptcd1	97	67.402	ENSPREG00000000059	ptcd1	90	67.717	Poecilia_reticulata
ENSGACG00000016607	ptcd1	91	48.425	ENSPPYG00000017377	-	90	48.425	Pongo_abelii
ENSGACG00000016607	ptcd1	80	52.273	ENSPCAG00000001852	-	82	52.273	Procavia_capensis
ENSGACG00000016607	ptcd1	94	46.984	ENSPCOG00000018596	-	88	47.536	Propithecus_coquereli
ENSGACG00000016607	ptcd1	99	70.312	ENSPNYG00000019993	ptcd1	89	70.312	Pundamilia_nyererei
ENSGACG00000016607	ptcd1	88	55.897	ENSPNAG00000014931	ptcd1	85	56.410	Pygocentrus_nattereri
ENSGACG00000016607	ptcd1	93	47.812	ENSRNOG00000000987	Ptcd1	88	47.812	Rattus_norvegicus
ENSGACG00000016607	ptcd1	94	48.509	ENSRBIG00000043393	-	90	48.823	Rhinopithecus_bieti
ENSGACG00000016607	ptcd1	94	48.509	ENSRROG00000036420	-	90	48.823	Rhinopithecus_roxellana
ENSGACG00000016607	ptcd1	95	48.281	ENSSBOG00000024114	-	91	48.438	Saimiri_boliviensis_boliviensis
ENSGACG00000016607	ptcd1	95	45.496	ENSSHAG00000011376	-	94	46.252	Sarcophilus_harrisii
ENSGACG00000016607	ptcd1	91	54.221	ENSSFOG00015007909	ptcd1	82	54.341	Scleropages_formosus
ENSGACG00000016607	ptcd1	97	67.035	ENSSMAG00000000218	ptcd1	99	66.614	Scophthalmus_maximus
ENSGACG00000016607	ptcd1	96	70.418	ENSSDUG00000015671	ptcd1	86	72.333	Seriola_dumerili
ENSGACG00000016607	ptcd1	92	72.621	ENSSLDG00000014261	ptcd1	87	69.672	Seriola_lalandi_dorsalis
ENSGACG00000016607	ptcd1	93	46.130	ENSSPUG00000003540	-	89	45.468	Sphenodon_punctatus
ENSGACG00000016607	ptcd1	99	69.739	ENSSPAG00000011049	ptcd1	90	70.092	Stegastes_partitus
ENSGACG00000016607	ptcd1	91	49.256	ENSSSCG00000007622	-	90	49.420	Sus_scrofa
ENSGACG00000016607	ptcd1	88	49.060	ENSTGUG00000007563	-	94	49.231	Taeniopygia_guttata
ENSGACG00000016607	ptcd1	99	68.868	ENSTRUG00000013471	ptcd1	88	68.396	Takifugu_rubripes
ENSGACG00000016607	ptcd1	94	69.536	ENSTNIG00000008271	ptcd1	88	69.536	Tetraodon_nigroviridis
ENSGACG00000016607	ptcd1	91	48.214	ENSTBEG00000011021	-	85	47.876	Tupaia_belangeri
ENSGACG00000016607	ptcd1	91	49.837	ENSTTRG00000003006	-	86	49.674	Tursiops_truncatus
ENSGACG00000016607	ptcd1	91	49.167	ENSUAMG00000008049	-	85	49.500	Ursus_americanus
ENSGACG00000016607	ptcd1	90	49.583	ENSVVUG00000008836	-	85	49.003	Vulpes_vulpes
ENSGACG00000016607	ptcd1	90	47.288	ENSXETG00000009891	ptcd1	85	47.288	Xenopus_tropicalis
ENSGACG00000016607	ptcd1	97	68.900	ENSXMAG00000015540	ptcd1	90	68.850	Xiphophorus_maculatus