EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000016706 (Gene tree)
Gene ID: -
Gene Symbol: npm1b
Alias: npm4
Full Name: nucleophosmin 1b
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 9926 bases
Position: chrgroupIV:3219707-3229632
Accession: ZDB-GENE-080723-7
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000022057	Nucleoplasmin	PF03066.15	1.4e-38	1	1
ENSGACP00000022060	Nucleoplasmin	PF03066.15	1.5e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000022102	-	864	-	ENSGACP00000022060	288 (aa)	-	G3PWS1
ENSGACT00000022099	-	861	-	ENSGACP00000022057	287 (aa)	-	G3PWR8

Gene Model

Click here to download ENSGACG00000016706's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000016706's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000016706	npm1b	97	40.210	ENSGACG00000020319	npm1a	95	39.437
ENSGACG00000016706	npm1b	66	33.508	ENSGACG00000007294	npm3	92	30.612

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000016706	npm1b	100	81.507	ENSAPOG00000004268	npm1b	98	81.507	Acanthochromis_polyacanthus
ENSGACG00000016706	npm1b	100	80.137	ENSAOCG00000012549	npm1b	98	80.137	Amphiprion_ocellaris
ENSGACG00000016706	npm1b	100	79.110	ENSAPEG00000000868	npm1b	98	79.795	Amphiprion_percula
ENSGACG00000016706	npm1b	100	81.973	ENSATEG00000006254	npm1b	98	82.313	Anabas_testudineus
ENSGACG00000016706	npm1b	98	42.193	ENSACAG00000015626	-	96	42.308	Anolis_carolinensis
ENSGACG00000016706	npm1b	51	89.041	ENSACLG00000013812	npm1b	66	89.362	Astatotilapia_calliptera
ENSGACG00000016706	npm1b	99	64.983	ENSAMXG00000042148	npm1b	99	64.646	Astyanax_mexicanus
ENSGACG00000016706	npm1b	83	35.341	ENSCAFG00000023359	-	66	33.908	Canis_familiaris
ENSGACG00000016706	npm1b	97	44.251	ENSCPBG00000021221	-	58	44.056	Chrysemys_picta_bellii
ENSGACG00000016706	npm1b	100	77.474	ENSCSEG00000004530	npm1b	98	76.109	Cynoglossus_semilaevis
ENSGACG00000016706	npm1b	100	73.469	ENSCVAG00000013016	npm1b	98	73.469	Cyprinodon_variegatus
ENSGACG00000016706	npm1b	100	66.779	ENSDARG00000037675	npm1b	99	64.430	Danio_rerio
ENSGACG00000016706	npm1b	99	65.217	ENSELUG00000022123	npm1b	98	66.555	Esox_lucius
ENSGACG00000016706	npm1b	95	46.021	ENSFALG00000003320	-	94	44.681	Ficedula_albicollis
ENSGACG00000016706	npm1b	100	73.986	ENSFHEG00000020794	npm1b	98	73.986	Fundulus_heteroclitus
ENSGACG00000016706	npm1b	100	64.041	ENSGMOG00000002689	npm1b	100	64.384	Gadus_morhua
ENSGACG00000016706	npm1b	100	45.277	ENSGALG00000002197	-	73	43.667	Gallus_gallus
ENSGACG00000016706	npm1b	100	73.379	ENSGAFG00000017709	npm1b	98	73.379	Gambusia_affinis
ENSGACG00000016706	npm1b	97	42.509	ENSGAGG00000020250	-	96	41.522	Gopherus_agassizii
ENSGACG00000016706	npm1b	100	77.891	ENSHBUG00000019903	npm1b	93	81.293	Haplochromis_burtoni
ENSGACG00000016706	npm1b	100	74.227	ENSHCOG00000003895	npm1b	98	74.914	Hippocampus_comes
ENSGACG00000016706	npm1b	100	61.238	ENSIPUG00000020165	npm1b	99	57.667	Ictalurus_punctatus
ENSGACG00000016706	npm1b	100	77.055	ENSKMAG00000008260	npm1b	99	77.055	Kryptolebias_marmoratus
ENSGACG00000016706	npm1b	67	85.864	ENSLBEG00000001304	-	94	86.316	Labrus_bergylta
ENSGACG00000016706	npm1b	95	41.722	ENSLACG00000001779	-	100	41.176	Latimeria_chalumnae
ENSGACG00000016706	npm1b	94	49.831	ENSLOCG00000001942	npm1b	99	50.676	Lepisosteus_oculatus
ENSGACG00000016706	npm1b	70	78.873	ENSMAMG00000015335	npm1b	97	78.873	Mastacembelus_armatus
ENSGACG00000016706	npm1b	94	45.105	ENSMGAG00000001591	-	100	43.369	Meleagris_gallopavo
ENSGACG00000016706	npm1b	81	80.591	ENSMALG00000015383	npm1b	98	83.544	Monopterus_albus
ENSGACG00000016706	npm1b	51	89.726	ENSNBRG00000014133	npm1b	77	90.071	Neolamprologus_brichardi
ENSGACG00000016706	npm1b	100	77.778	ENSONIG00000001397	npm1b	98	75.578	Oreochromis_niloticus
ENSGACG00000016706	npm1b	99	65.385	ENSOMEG00000003414	npm1b	99	63.571	Oryzias_melastigma
ENSGACG00000016706	npm1b	99	57.878	ENSPKIG00000020050	npm1b	98	57.235	Paramormyrops_kingsleyae
ENSGACG00000016706	npm1b	97	45.361	ENSPSIG00000011204	-	92	44.406	Pelodiscus_sinensis
ENSGACG00000016706	npm1b	100	73.469	ENSPFOG00000018357	npm1b	98	73.810	Poecilia_formosa
ENSGACG00000016706	npm1b	51	89.041	ENSPNYG00000001427	npm1b	66	89.362	Pundamilia_nyererei
ENSGACG00000016706	npm1b	99	64.164	ENSPNAG00000005498	npm1b	99	64.384	Pygocentrus_nattereri
ENSGACG00000016706	npm1b	99	57.639	ENSSFOG00015005064	npm1b	97	59.011	Scleropages_formosus
ENSGACG00000016706	npm1b	100	81.849	ENSSMAG00000008088	npm1b	98	81.849	Scophthalmus_maximus
ENSGACG00000016706	npm1b	100	84.983	ENSSDUG00000007726	npm1b	98	82.594	Seriola_dumerili
ENSGACG00000016706	npm1b	100	85.324	ENSSLDG00000021396	npm1b	98	82.935	Seriola_lalandi_dorsalis
ENSGACG00000016706	npm1b	100	83.219	ENSSPAG00000011152	npm1b	98	83.219	Stegastes_partitus
ENSGACG00000016706	npm1b	94	44.948	ENSTGUG00000014970	-	100	43.403	Taeniopygia_guttata
ENSGACG00000016706	npm1b	100	78.007	ENSTRUG00000008105	npm1b	94	77.320	Takifugu_rubripes
ENSGACG00000016706	npm1b	100	72.542	ENSTNIG00000013057	npm1b	99	71.864	Tetraodon_nigroviridis
ENSGACG00000016706	npm1b	98	44.631	ENSXETG00000008403	npm1	99	40.532	Xenopus_tropicalis
ENSGACG00000016706	npm1b	100	73.810	ENSXMAG00000001986	npm1b	98	74.490	Xiphophorus_maculatus