EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000016713 (Gene tree)
Gene ID: -
Gene Symbol: prdm12b
Alias: zgc:101606
Full Name: PR domain containing 12b
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 2964 bases
Position: chrgroupXIV:5446284-5449247
Accession: ZDB-GENE-041114-172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000022065	zf-C2H2	PF00096.26	6.5e-13	1	2
ENSGACP00000022065	zf-C2H2	PF00096.26	6.5e-13	2	2
ENSGACP00000022065	zf-met	PF12874.7	6.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000022107	-	1116	-	ENSGACP00000022065	371 (aa)	-	G3PWS6

Gene Model

Click here to download ENSGACG00000016713's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000016713's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000016713	prdm12b	60	33.456	ENSGACG00000002829	prdm14	69	33.456
ENSGACG00000016713	prdm12b	53	35.938	ENSGACG00000016102	zbtb41	54	35.938

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000016713	prdm12b	91	82.840	ENSG00000130711	PRDM12	100	77.394	Homo_sapiens
ENSGACG00000016713	prdm12b	99	87.047	ENSAPOG00000016051	prdm12b	100	88.083	Acanthochromis_polyacanthus
ENSGACG00000016713	prdm12b	99	66.400	ENSAPOG00000018234	-	100	66.400	Acanthochromis_polyacanthus
ENSGACG00000016713	prdm12b	89	81.627	ENSAMEG00000016234	PRDM12	99	81.928	Ailuropoda_melanoleuca
ENSGACG00000016713	prdm12b	99	78.811	ENSACIG00000005193	-	100	79.070	Amphilophus_citrinellus
ENSGACG00000016713	prdm12b	99	87.599	ENSACIG00000019578	prdm12b	100	88.654	Amphilophus_citrinellus
ENSGACG00000016713	prdm12b	99	87.435	ENSAOCG00000015040	prdm12b	100	88.482	Amphiprion_ocellaris
ENSGACG00000016713	prdm12b	100	72.843	ENSAPEG00000022849	-	100	73.858	Amphiprion_percula
ENSGACG00000016713	prdm12b	99	88.127	ENSAPEG00000015092	prdm12b	100	89.446	Amphiprion_percula
ENSGACG00000016713	prdm12b	99	78.036	ENSATEG00000014595	-	100	79.070	Anabas_testudineus
ENSGACG00000016713	prdm12b	94	81.089	ENSANAG00000020616	PRDM12	100	81.089	Aotus_nancymaae
ENSGACG00000016713	prdm12b	99	76.574	ENSACLG00000007631	-	100	77.582	Astatotilapia_calliptera
ENSGACG00000016713	prdm12b	99	87.668	ENSACLG00000011876	prdm12b	100	87.668	Astatotilapia_calliptera
ENSGACG00000016713	prdm12b	99	82.038	ENSAMXG00000033665	prdm12b	100	82.933	Astyanax_mexicanus
ENSGACG00000016713	prdm12b	99	80.863	ENSAMXG00000008540	PRDM12	100	80.863	Astyanax_mexicanus
ENSGACG00000016713	prdm12b	91	83.728	ENSBTAG00000023797	PRDM12	100	78.763	Bos_taurus
ENSGACG00000016713	prdm12b	91	82.840	ENSCJAG00000020540	PRDM12	100	77.394	Callithrix_jacchus
ENSGACG00000016713	prdm12b	79	83.729	ENSCAFG00000023076	PRDM12	99	77.879	Canis_familiaris
ENSGACG00000016713	prdm12b	91	83.432	ENSCAFG00020024046	PRDM12	100	78.284	Canis_lupus_dingo
ENSGACG00000016713	prdm12b	91	83.432	ENSCHIG00000025005	PRDM12	100	77.926	Capra_hircus
ENSGACG00000016713	prdm12b	87	83.540	ENSCPOG00000005901	PRDM12	95	83.540	Cavia_porcellus
ENSGACG00000016713	prdm12b	91	82.840	ENSCCAG00000037485	PRDM12	100	77.688	Cebus_capucinus
ENSGACG00000016713	prdm12b	91	82.840	ENSCATG00000020327	PRDM12	100	77.688	Cercocebus_atys
ENSGACG00000016713	prdm12b	91	83.136	ENSCLAG00000005499	PRDM12	90	83.136	Chinchilla_lanigera
ENSGACG00000016713	prdm12b	91	82.840	ENSCSAG00000014756	PRDM12	100	77.748	Chlorocebus_sabaeus
ENSGACG00000016713	prdm12b	100	79.301	ENSCPBG00000022628	PRDM12	100	79.301	Chrysemys_picta_bellii
ENSGACG00000016713	prdm12b	91	83.728	ENSCGRG00001015005	Prdm12	100	78.191	Cricetulus_griseus_chok1gshd
ENSGACG00000016713	prdm12b	99	87.366	ENSCVAG00000017166	prdm12b	100	89.544	Cyprinodon_variegatus
ENSGACG00000016713	prdm12b	99	76.020	ENSCVAG00000000944	-	100	77.041	Cyprinodon_variegatus
ENSGACG00000016713	prdm12b	99	83.602	ENSDARG00000007430	prdm12b	100	83.602	Danio_rerio
ENSGACG00000016713	prdm12b	90	83.432	ENSDNOG00000042302	PRDM12	99	78.342	Dasypus_novemcinctus
ENSGACG00000016713	prdm12b	87	63.450	ENSEBUG00000016780	prdm12b	76	64.912	Eptatretus_burgeri
ENSGACG00000016713	prdm12b	94	81.662	ENSEASG00005008472	PRDM12	100	78.191	Equus_asinus_asinus
ENSGACG00000016713	prdm12b	94	81.662	ENSECAG00000005933	PRDM12	100	78.191	Equus_caballus
ENSGACG00000016713	prdm12b	99	81.941	ENSELUG00000013674	PRDM12	100	83.333	Esox_lucius
ENSGACG00000016713	prdm12b	99	82.306	ENSELUG00000009905	prdm12b	100	82.306	Esox_lucius
ENSGACG00000016713	prdm12b	91	83.432	ENSFCAG00000043086	PRDM12	100	78.226	Felis_catus
ENSGACG00000016713	prdm12b	100	79.245	ENSFALG00000001445	PRDM12	89	79.245	Ficedula_albicollis
ENSGACG00000016713	prdm12b	99	75.819	ENSFHEG00000007746	-	100	76.071	Fundulus_heteroclitus
ENSGACG00000016713	prdm12b	99	86.133	ENSFHEG00000003944	prdm12b	100	88.830	Fundulus_heteroclitus
ENSGACG00000016713	prdm12b	99	84.392	ENSGMOG00000011797	prdm12b	100	84.737	Gadus_morhua
ENSGACG00000016713	prdm12b	100	79.245	ENSGALG00000003895	PRDM12	100	79.245	Gallus_gallus
ENSGACG00000016713	prdm12b	100	87.632	ENSGAFG00000010827	prdm12b	100	88.158	Gambusia_affinis
ENSGACG00000016713	prdm12b	100	79.301	ENSGAGG00000014083	PRDM12	100	79.301	Gopherus_agassizii
ENSGACG00000016713	prdm12b	91	82.544	ENSGGOG00000010568	PRDM12	100	77.128	Gorilla_gorilla
ENSGACG00000016713	prdm12b	99	88.859	ENSHBUG00000022878	prdm12b	100	90.186	Haplochromis_burtoni
ENSGACG00000016713	prdm12b	99	76.574	ENSHBUG00000022537	-	93	77.582	Haplochromis_burtoni
ENSGACG00000016713	prdm12b	91	83.432	ENSHGLG00000013939	PRDM12	100	76.903	Heterocephalus_glaber_female
ENSGACG00000016713	prdm12b	89	87.135	ENSHCOG00000003663	prdm12b	100	81.980	Hippocampus_comes
ENSGACG00000016713	prdm12b	99	71.693	ENSHCOG00000021167	-	100	71.693	Hippocampus_comes
ENSGACG00000016713	prdm12b	99	83.378	ENSIPUG00000017053	prdm12b	100	83.378	Ictalurus_punctatus
ENSGACG00000016713	prdm12b	99	80.270	ENSIPUG00000019544	PRDM12	100	80.270	Ictalurus_punctatus
ENSGACG00000016713	prdm12b	97	78.962	ENSSTOG00000005986	PRDM12	93	78.962	Ictidomys_tridecemlineatus
ENSGACG00000016713	prdm12b	91	83.728	ENSJJAG00000005424	Prdm12	99	83.728	Jaculus_jaculus
ENSGACG00000016713	prdm12b	99	81.281	ENSKMAG00000016921	prdm12b	100	82.512	Kryptolebias_marmoratus
ENSGACG00000016713	prdm12b	94	79.320	ENSKMAG00000021205	-	94	78.711	Kryptolebias_marmoratus
ENSGACG00000016713	prdm12b	99	90.716	ENSLBEG00000017769	prdm12b	100	91.777	Labrus_bergylta
ENSGACG00000016713	prdm12b	99	78.010	ENSLBEG00000007776	-	100	79.319	Labrus_bergylta
ENSGACG00000016713	prdm12b	99	78.976	ENSLACG00000017560	PRDM12	99	78.976	Latimeria_chalumnae
ENSGACG00000016713	prdm12b	99	81.132	ENSLOCG00000005429	prdm12b	99	82.796	Lepisosteus_oculatus
ENSGACG00000016713	prdm12b	91	82.216	ENSLAFG00000006979	PRDM12	93	80.508	Loxodonta_africana
ENSGACG00000016713	prdm12b	100	76.596	ENSMFAG00000040322	PRDM12	100	77.128	Macaca_fascicularis
ENSGACG00000016713	prdm12b	91	82.840	ENSMNEG00000037234	PRDM12	100	77.688	Macaca_nemestrina
ENSGACG00000016713	prdm12b	99	73.750	ENSMAMG00000018988	-	100	74.750	Mastacembelus_armatus
ENSGACG00000016713	prdm12b	99	91.176	ENSMAMG00000013212	prdm12b	100	91.711	Mastacembelus_armatus
ENSGACG00000016713	prdm12b	99	76.190	ENSMZEG00005000415	PRDM12	100	77.193	Maylandia_zebra
ENSGACG00000016713	prdm12b	94	81.897	ENSMGAG00000005438	PRDM12	96	81.897	Meleagris_gallopavo
ENSGACG00000016713	prdm12b	100	78.075	ENSMAUG00000013040	Prdm12	100	78.075	Mesocricetus_auratus
ENSGACG00000016713	prdm12b	93	81.844	ENSMICG00000015480	PRDM12	100	77.394	Microcebus_murinus
ENSGACG00000016713	prdm12b	96	81.006	ENSMOCG00000021026	Prdm12	93	82.235	Microtus_ochrogaster
ENSGACG00000016713	prdm12b	100	79.570	ENSMODG00000012108	PRDM12	100	79.570	Monodelphis_domestica
ENSGACG00000016713	prdm12b	99	77.297	ENSMALG00000021901	prdm12b	99	77.297	Monopterus_albus
ENSGACG00000016713	prdm12b	91	83.728	MGP_CAROLIEiJ_G0023414	Prdm12	100	78.191	Mus_caroli
ENSGACG00000016713	prdm12b	91	83.728	ENSMUSG00000079466	Prdm12	100	78.191	Mus_musculus
ENSGACG00000016713	prdm12b	91	83.728	MGP_PahariEiJ_G0024871	Prdm12	100	78.191	Mus_pahari
ENSGACG00000016713	prdm12b	91	83.728	MGP_SPRETEiJ_G0024331	Prdm12	100	78.191	Mus_spretus
ENSGACG00000016713	prdm12b	90	83.533	ENSNGAG00000018480	Prdm12	100	77.688	Nannospalax_galili
ENSGACG00000016713	prdm12b	99	88.421	ENSNBRG00000006727	prdm12b	100	89.211	Neolamprologus_brichardi
ENSGACG00000016713	prdm12b	99	72.703	ENSNBRG00000024312	-	100	72.966	Neolamprologus_brichardi
ENSGACG00000016713	prdm12b	100	71.774	ENSMEUG00000003828	PRDM12	100	71.774	Notamacropus_eugenii
ENSGACG00000016713	prdm12b	91	83.136	ENSOPRG00000008680	PRDM12	99	83.136	Ochotona_princeps
ENSGACG00000016713	prdm12b	98	79.339	ENSODEG00000016282	PRDM12	65	79.339	Octodon_degus
ENSGACG00000016713	prdm12b	63	76.596	ENSOANG00000001043	PRDM12	100	76.596	Ornithorhynchus_anatinus
ENSGACG00000016713	prdm12b	83	83.713	ENSOCUG00000008241	PRDM12	96	83.713	Oryctolagus_cuniculus
ENSGACG00000016713	prdm12b	99	76.020	ENSORLG00000017558	-	100	77.296	Oryzias_latipes
ENSGACG00000016713	prdm12b	100	86.352	ENSORLG00000007114	prdm12b	100	86.877	Oryzias_latipes
ENSGACG00000016713	prdm12b	99	76.081	ENSORLG00020013167	-	100	77.099	Oryzias_latipes_hni
ENSGACG00000016713	prdm12b	100	85.901	ENSORLG00020019565	prdm12b	100	86.945	Oryzias_latipes_hni
ENSGACG00000016713	prdm12b	100	87.139	ENSORLG00015007621	prdm12b	100	87.402	Oryzias_latipes_hsok
ENSGACG00000016713	prdm12b	99	76.020	ENSORLG00015003435	-	100	77.296	Oryzias_latipes_hsok
ENSGACG00000016713	prdm12b	100	86.753	ENSOMEG00000004134	prdm12b	100	87.273	Oryzias_melastigma
ENSGACG00000016713	prdm12b	99	76.883	ENSOMEG00000007762	-	100	77.143	Oryzias_melastigma
ENSGACG00000016713	prdm12b	91	83.432	ENSOGAG00000007557	PRDM12	99	83.432	Otolemur_garnettii
ENSGACG00000016713	prdm12b	80	81.419	ENSPPAG00000031506	-	97	81.419	Pan_paniscus
ENSGACG00000016713	prdm12b	100	72.922	ENSPPRG00000023024	PRDM12	92	72.922	Panthera_pardus
ENSGACG00000016713	prdm12b	91	82.840	ENSPTRG00000043324	-	100	77.394	Pan_troglodytes
ENSGACG00000016713	prdm12b	91	82.840	ENSPTRG00000021475	PRDM12	100	77.394	Pan_troglodytes
ENSGACG00000016713	prdm12b	91	82.840	ENSPANG00000025967	PRDM12	100	77.688	Papio_anubis
ENSGACG00000016713	prdm12b	99	82.038	ENSPKIG00000007228	prdm12b	100	83.155	Paramormyrops_kingsleyae
ENSGACG00000016713	prdm12b	94	78.223	ENSPKIG00000004305	PRDM12	98	78.797	Paramormyrops_kingsleyae
ENSGACG00000016713	prdm12b	100	79.301	ENSPSIG00000006739	PRDM12	100	79.301	Pelodiscus_sinensis
ENSGACG00000016713	prdm12b	99	74.235	ENSPMGG00000002356	-	100	73.434	Periophthalmus_magnuspinnatus
ENSGACG00000016713	prdm12b	100	88.472	ENSPMGG00000008867	prdm12b	100	89.008	Periophthalmus_magnuspinnatus
ENSGACG00000016713	prdm12b	91	83.728	ENSPEMG00000009969	Prdm12	90	83.728	Peromyscus_maniculatus_bairdii
ENSGACG00000016713	prdm12b	100	79.570	ENSPCIG00000024119	PRDM12	100	79.570	Phascolarctos_cinereus
ENSGACG00000016713	prdm12b	99	89.037	ENSPFOG00000019841	prdm12b	100	89.037	Poecilia_formosa
ENSGACG00000016713	prdm12b	100	87.402	ENSPLAG00000016626	prdm12b	100	88.251	Poecilia_latipinna
ENSGACG00000016713	prdm12b	96	87.500	ENSPMEG00000016698	prdm12b	99	88.315	Poecilia_mexicana
ENSGACG00000016713	prdm12b	95	74.931	ENSPREG00000003211	-	94	74.931	Poecilia_reticulata
ENSGACG00000016713	prdm12b	100	86.979	ENSPREG00000015073	prdm12b	100	87.760	Poecilia_reticulata
ENSGACG00000016713	prdm12b	95	80.000	ENSPPYG00000019694	PRDM12	99	80.000	Pongo_abelii
ENSGACG00000016713	prdm12b	91	83.432	ENSPCOG00000022255	PRDM12	100	77.926	Propithecus_coquereli
ENSGACG00000016713	prdm12b	91	83.432	ENSPVAG00000001511	PRDM12	100	78.133	Pteropus_vampyrus
ENSGACG00000016713	prdm12b	99	88.391	ENSPNYG00000009607	prdm12b	100	89.446	Pundamilia_nyererei
ENSGACG00000016713	prdm12b	99	76.190	ENSPNYG00000013589	-	100	77.193	Pundamilia_nyererei
ENSGACG00000016713	prdm12b	99	79.211	ENSPNAG00000013396	PRDM12	100	79.737	Pygocentrus_nattereri
ENSGACG00000016713	prdm12b	99	82.210	ENSPNAG00000024532	prdm12b	100	83.110	Pygocentrus_nattereri
ENSGACG00000016713	prdm12b	91	83.728	ENSRNOG00000009218	Prdm12	100	78.191	Rattus_norvegicus
ENSGACG00000016713	prdm12b	88	83.436	ENSRBIG00000042712	PRDM12	99	76.486	Rhinopithecus_bieti
ENSGACG00000016713	prdm12b	89	83.636	ENSRROG00000043554	PRDM12	100	83.636	Rhinopithecus_roxellana
ENSGACG00000016713	prdm12b	100	79.357	ENSSHAG00000015972	PRDM12	100	79.357	Sarcophilus_harrisii
ENSGACG00000016713	prdm12b	99	88.432	ENSSMAG00000003754	prdm12b	100	89.203	Scophthalmus_maximus
ENSGACG00000016713	prdm12b	99	78.182	ENSSDUG00000019071	-	100	79.221	Seriola_dumerili
ENSGACG00000016713	prdm12b	99	89.844	ENSSDUG00000023498	prdm12b	100	90.365	Seriola_dumerili
ENSGACG00000016713	prdm12b	99	78.495	ENSSLDG00000013562	-	100	78.495	Seriola_lalandi_dorsalis
ENSGACG00000016713	prdm12b	99	91.339	ENSSLDG00000009557	prdm12b	100	91.864	Seriola_lalandi_dorsalis
ENSGACG00000016713	prdm12b	100	79.839	ENSSPUG00000013424	PRDM12	100	79.839	Sphenodon_punctatus
ENSGACG00000016713	prdm12b	99	70.361	ENSSPAG00000022420	-	100	72.251	Stegastes_partitus
ENSGACG00000016713	prdm12b	99	87.728	ENSSPAG00000018824	prdm12b	100	89.295	Stegastes_partitus
ENSGACG00000016713	prdm12b	91	83.432	ENSSSCG00000005703	PRDM12	100	78.284	Sus_scrofa
ENSGACG00000016713	prdm12b	99	77.540	ENSTRUG00000013239	-	100	77.807	Takifugu_rubripes
ENSGACG00000016713	prdm12b	99	88.472	ENSTRUG00000018659	prdm12b	100	89.544	Takifugu_rubripes
ENSGACG00000016713	prdm12b	99	88.472	ENSTNIG00000009020	prdm12b	99	88.740	Tetraodon_nigroviridis
ENSGACG00000016713	prdm12b	99	75.532	ENSTNIG00000005859	-	99	75.532	Tetraodon_nigroviridis
ENSGACG00000016713	prdm12b	91	83.432	ENSUAMG00000009653	PRDM12	94	81.375	Ursus_americanus
ENSGACG00000016713	prdm12b	91	83.432	ENSVVUG00000027662	PRDM12	78	83.432	Vulpes_vulpes
ENSGACG00000016713	prdm12b	100	88.564	ENSXCOG00000002836	prdm12b	100	89.153	Xiphophorus_couchianus
ENSGACG00000016713	prdm12b	99	74.747	ENSXMAG00000028012	-	100	75.253	Xiphophorus_maculatus
ENSGACG00000016713	prdm12b	99	88.800	ENSXMAG00000005537	prdm12b	100	89.390	Xiphophorus_maculatus