EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000017223 (Gene tree)
Gene ID: -
Gene Symbol: lsm6
Alias: zgc:92379
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 1485 bases
Position: chrgroupIX:6844580-6846064
Accession: ZDB-GENE-040625-50
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000022745	LSM	PF01423.22	1.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000022788	-	243	-	ENSGACP00000022745	80 (aa)	-	G3PYQ5

Gene Model

Click here to download ENSGACG00000017223's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000017223's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000017223	lsm6	83	50.000	ENSGACG00000020055	snrpf	78	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000017223	lsm6	99	96.203	ENSG00000164167	LSM6	99	96.203	Homo_sapiens
ENSGACG00000017223	lsm6	100	98.750	ENSAPOG00000019832	lsm6	100	98.750	Acanthochromis_polyacanthus
ENSGACG00000017223	lsm6	99	96.203	ENSAMEG00000016671	LSM6	99	96.203	Ailuropoda_melanoleuca
ENSGACG00000017223	lsm6	100	98.750	ENSACIG00000016711	lsm6	100	98.750	Amphilophus_citrinellus
ENSGACG00000017223	lsm6	99	100.000	ENSAOCG00000002110	lsm6	51	100.000	Amphiprion_ocellaris
ENSGACG00000017223	lsm6	100	98.750	ENSAPEG00000023992	lsm6	100	98.750	Amphiprion_percula
ENSGACG00000017223	lsm6	100	98.750	ENSATEG00000012610	lsm6	100	98.750	Anabas_testudineus
ENSGACG00000017223	lsm6	95	96.053	ENSAPLG00000012594	LSM6	97	96.053	Anas_platyrhynchos
ENSGACG00000017223	lsm6	99	96.203	ENSACAG00000004004	LSM6	99	96.203	Anolis_carolinensis
ENSGACG00000017223	lsm6	99	96.203	ENSANAG00000030568	-	99	96.203	Aotus_nancymaae
ENSGACG00000017223	lsm6	99	83.544	ENSANAG00000021839	-	99	83.544	Aotus_nancymaae
ENSGACG00000017223	lsm6	100	98.750	ENSACLG00000025621	lsm6	100	98.750	Astatotilapia_calliptera
ENSGACG00000017223	lsm6	99	98.734	ENSAMXG00000038738	lsm6	99	98.734	Astyanax_mexicanus
ENSGACG00000017223	lsm6	99	89.873	ENSBTAG00000052085	-	99	89.873	Bos_taurus
ENSGACG00000017223	lsm6	99	96.203	ENSBTAG00000014060	LSM6	99	96.203	Bos_taurus
ENSGACG00000017223	lsm6	94	78.667	WBGene00003080	lsm-6	97	78.667	Caenorhabditis_elegans
ENSGACG00000017223	lsm6	99	96.203	ENSCJAG00000002482	LSM6	99	96.203	Callithrix_jacchus
ENSGACG00000017223	lsm6	99	96.203	ENSCAFG00000007738	LSM6	99	96.203	Canis_familiaris
ENSGACG00000017223	lsm6	99	96.203	ENSCAFG00020025902	LSM6	99	96.203	Canis_lupus_dingo
ENSGACG00000017223	lsm6	99	81.013	ENSCHIG00000024198	-	93	81.013	Capra_hircus
ENSGACG00000017223	lsm6	89	97.183	ENSCHIG00000012864	-	100	97.183	Capra_hircus
ENSGACG00000017223	lsm6	99	96.203	ENSCHIG00000010334	-	99	96.203	Capra_hircus
ENSGACG00000017223	lsm6	99	96.203	ENSTSYG00000026972	LSM6	99	96.203	Carlito_syrichta
ENSGACG00000017223	lsm6	80	89.062	ENSTSYG00000012759	-	84	89.062	Carlito_syrichta
ENSGACG00000017223	lsm6	99	96.203	ENSCAPG00000008104	LSM6	99	96.203	Cavia_aperea
ENSGACG00000017223	lsm6	81	93.846	ENSCAPG00000011179	-	100	93.846	Cavia_aperea
ENSGACG00000017223	lsm6	99	96.203	ENSCPOG00000032655	LSM6	99	96.203	Cavia_porcellus
ENSGACG00000017223	lsm6	100	93.750	ENSCCAG00000020665	-	100	93.750	Cebus_capucinus
ENSGACG00000017223	lsm6	99	96.203	ENSCCAG00000036437	LSM6	99	96.203	Cebus_capucinus
ENSGACG00000017223	lsm6	99	96.203	ENSCATG00000002770	-	99	96.203	Cercocebus_atys
ENSGACG00000017223	lsm6	99	73.418	ENSCATG00000038799	-	99	73.418	Cercocebus_atys
ENSGACG00000017223	lsm6	89	77.465	ENSCLAG00000005685	-	100	77.465	Chinchilla_lanigera
ENSGACG00000017223	lsm6	99	96.203	ENSCLAG00000005495	LSM6	99	96.203	Chinchilla_lanigera
ENSGACG00000017223	lsm6	99	96.203	ENSCSAG00000003421	LSM6	99	96.203	Chlorocebus_sabaeus
ENSGACG00000017223	lsm6	99	75.949	ENSCHOG00000003420	LSM6	98	75.949	Choloepus_hoffmanni
ENSGACG00000017223	lsm6	99	96.203	ENSCPBG00000027472	LSM6	83	96.203	Chrysemys_picta_bellii
ENSGACG00000017223	lsm6	96	93.506	ENSCING00000019152	-	94	93.506	Ciona_intestinalis
ENSGACG00000017223	lsm6	96	94.805	ENSCSAVG00000002065	-	94	94.805	Ciona_savignyi
ENSGACG00000017223	lsm6	99	69.620	ENSCANG00000035214	-	99	69.620	Colobus_angolensis_palliatus
ENSGACG00000017223	lsm6	99	96.203	ENSCANG00000041263	-	99	96.203	Colobus_angolensis_palliatus
ENSGACG00000017223	lsm6	99	96.203	ENSCANG00000006849	-	99	96.203	Colobus_angolensis_palliatus
ENSGACG00000017223	lsm6	99	96.203	ENSCGRG00001017142	Lsm6	99	96.203	Cricetulus_griseus_chok1gshd
ENSGACG00000017223	lsm6	99	96.203	ENSCGRG00000008320	Lsm6	99	96.203	Cricetulus_griseus_crigri
ENSGACG00000017223	lsm6	100	98.750	ENSCSEG00000000423	lsm6	100	98.750	Cynoglossus_semilaevis
ENSGACG00000017223	lsm6	100	98.750	ENSCVAG00000001592	lsm6	100	98.750	Cyprinodon_variegatus
ENSGACG00000017223	lsm6	99	98.734	ENSDARG00000036995	lsm6	99	98.734	Danio_rerio
ENSGACG00000017223	lsm6	86	97.101	ENSDNOG00000040186	-	74	97.101	Dasypus_novemcinctus
ENSGACG00000017223	lsm6	99	94.937	ENSDNOG00000044848	-	99	94.937	Dasypus_novemcinctus
ENSGACG00000017223	lsm6	99	96.203	ENSDORG00000000933	Lsm6	99	96.203	Dipodomys_ordii
ENSGACG00000017223	lsm6	95	82.895	FBgn0034564	CG9344	96	82.895	Drosophila_melanogaster
ENSGACG00000017223	lsm6	59	93.617	ENSETEG00000013098	LSM6	98	93.617	Echinops_telfairi
ENSGACG00000017223	lsm6	100	95.000	ENSEBUG00000017073	lsm6	100	95.000	Eptatretus_burgeri
ENSGACG00000017223	lsm6	86	97.101	ENSEASG00005001533	LSM6	72	97.101	Equus_asinus_asinus
ENSGACG00000017223	lsm6	99	96.203	ENSECAG00000021036	LSM6	99	96.203	Equus_caballus
ENSGACG00000017223	lsm6	98	67.949	ENSEEUG00000002101	LSM6	99	67.949	Erinaceus_europaeus
ENSGACG00000017223	lsm6	99	98.734	ENSELUG00000014301	LSM6	99	98.734	Esox_lucius
ENSGACG00000017223	lsm6	99	96.203	ENSFCAG00000003047	LSM6	99	96.203	Felis_catus
ENSGACG00000017223	lsm6	99	96.203	ENSFALG00000005509	LSM6	91	96.203	Ficedula_albicollis
ENSGACG00000017223	lsm6	99	96.203	ENSFDAG00000020913	-	99	96.203	Fukomys_damarensis
ENSGACG00000017223	lsm6	99	86.076	ENSFDAG00000019073	-	99	86.076	Fukomys_damarensis
ENSGACG00000017223	lsm6	100	98.750	ENSFHEG00000007948	lsm6	100	98.750	Fundulus_heteroclitus
ENSGACG00000017223	lsm6	100	98.750	ENSGMOG00000015550	lsm6	100	98.750	Gadus_morhua
ENSGACG00000017223	lsm6	99	96.203	ENSGALG00000009985	LSM6	99	96.203	Gallus_gallus
ENSGACG00000017223	lsm6	100	98.750	ENSGAFG00000017763	lsm6	100	98.750	Gambusia_affinis
ENSGACG00000017223	lsm6	99	96.203	ENSGAGG00000020980	LSM6	99	96.203	Gopherus_agassizii
ENSGACG00000017223	lsm6	99	96.203	ENSGGOG00000001310	LSM6	99	96.203	Gorilla_gorilla
ENSGACG00000017223	lsm6	100	98.750	ENSHBUG00000008618	lsm6	100	98.750	Haplochromis_burtoni
ENSGACG00000017223	lsm6	99	96.203	ENSHGLG00000000205	LSM6	99	96.203	Heterocephalus_glaber_female
ENSGACG00000017223	lsm6	99	96.203	ENSHGLG00100014341	LSM6	99	96.203	Heterocephalus_glaber_male
ENSGACG00000017223	lsm6	99	100.000	ENSHCOG00000005591	lsm6	99	100.000	Hippocampus_comes
ENSGACG00000017223	lsm6	99	97.468	ENSIPUG00000004508	lsm6	99	97.468	Ictalurus_punctatus
ENSGACG00000017223	lsm6	99	96.203	ENSSTOG00000002678	LSM6	99	96.203	Ictidomys_tridecemlineatus
ENSGACG00000017223	lsm6	99	96.203	ENSJJAG00000013845	-	99	96.203	Jaculus_jaculus
ENSGACG00000017223	lsm6	95	76.316	ENSJJAG00000016942	-	96	76.316	Jaculus_jaculus
ENSGACG00000017223	lsm6	99	86.076	ENSJJAG00000011211	-	99	86.076	Jaculus_jaculus
ENSGACG00000017223	lsm6	100	98.750	ENSKMAG00000004105	lsm6	100	98.750	Kryptolebias_marmoratus
ENSGACG00000017223	lsm6	100	98.750	ENSLBEG00000018441	lsm6	100	98.750	Labrus_bergylta
ENSGACG00000017223	lsm6	99	96.203	ENSLACG00000006937	LSM6	99	96.203	Latimeria_chalumnae
ENSGACG00000017223	lsm6	99	97.468	ENSLOCG00000017683	-	99	97.468	Lepisosteus_oculatus
ENSGACG00000017223	lsm6	99	98.734	ENSLOCG00000008852	lsm6	99	98.734	Lepisosteus_oculatus
ENSGACG00000017223	lsm6	99	96.203	ENSLAFG00000001952	LSM6	99	96.203	Loxodonta_africana
ENSGACG00000017223	lsm6	99	96.203	ENSMFAG00000033073	LSM6	99	96.203	Macaca_fascicularis
ENSGACG00000017223	lsm6	99	74.684	ENSMNEG00000040412	-	99	74.684	Macaca_nemestrina
ENSGACG00000017223	lsm6	99	96.203	ENSMNEG00000034820	-	99	96.203	Macaca_nemestrina
ENSGACG00000017223	lsm6	99	96.203	ENSMLEG00000035153	LSM6	99	96.203	Mandrillus_leucophaeus
ENSGACG00000017223	lsm6	100	98.750	ENSMAMG00000014029	lsm6	100	98.750	Mastacembelus_armatus
ENSGACG00000017223	lsm6	100	98.750	ENSMZEG00005009146	lsm6	100	98.750	Maylandia_zebra
ENSGACG00000017223	lsm6	99	96.203	ENSMGAG00000003802	LSM6	99	96.203	Meleagris_gallopavo
ENSGACG00000017223	lsm6	99	96.203	ENSMAUG00000014938	Lsm6	99	96.203	Mesocricetus_auratus
ENSGACG00000017223	lsm6	98	88.462	ENSMICG00000047411	-	92	88.462	Microcebus_murinus
ENSGACG00000017223	lsm6	99	96.203	ENSMICG00000042599	LSM6	99	96.203	Microcebus_murinus
ENSGACG00000017223	lsm6	99	96.203	ENSMOCG00000020049	Lsm6	99	96.203	Microtus_ochrogaster
ENSGACG00000017223	lsm6	100	98.750	ENSMMOG00000005470	lsm6	100	98.750	Mola_mola
ENSGACG00000017223	lsm6	100	92.500	ENSMMOG00000007379	-	100	92.500	Mola_mola
ENSGACG00000017223	lsm6	99	96.203	ENSMODG00000000526	LSM6	99	96.203	Monodelphis_domestica
ENSGACG00000017223	lsm6	100	98.750	ENSMALG00000002419	lsm6	100	98.750	Monopterus_albus
ENSGACG00000017223	lsm6	99	96.203	MGP_CAROLIEiJ_G0031245	Lsm6	99	96.203	Mus_caroli
ENSGACG00000017223	lsm6	99	96.203	ENSMUSG00000031683	Lsm6	99	96.203	Mus_musculus
ENSGACG00000017223	lsm6	99	96.203	MGP_PahariEiJ_G0022851	Lsm6	99	96.203	Mus_pahari
ENSGACG00000017223	lsm6	99	96.203	MGP_SPRETEiJ_G0032365	Lsm6	99	96.203	Mus_spretus
ENSGACG00000017223	lsm6	99	96.203	ENSMPUG00000006936	LSM6	92	96.203	Mustela_putorius_furo
ENSGACG00000017223	lsm6	99	96.203	ENSMLUG00000026355	LSM6	99	96.203	Myotis_lucifugus
ENSGACG00000017223	lsm6	99	96.203	ENSNGAG00000019116	Lsm6	99	96.203	Nannospalax_galili
ENSGACG00000017223	lsm6	100	98.750	ENSNBRG00000004887	lsm6	100	98.750	Neolamprologus_brichardi
ENSGACG00000017223	lsm6	99	96.203	ENSNLEG00000005584	LSM6	99	96.203	Nomascus_leucogenys
ENSGACG00000017223	lsm6	99	94.937	ENSOPRG00000011199	LSM6	99	94.937	Ochotona_princeps
ENSGACG00000017223	lsm6	99	93.671	ENSODEG00000020420	-	99	93.671	Octodon_degus
ENSGACG00000017223	lsm6	99	94.937	ENSODEG00000019419	-	99	94.937	Octodon_degus
ENSGACG00000017223	lsm6	99	94.937	ENSODEG00000002307	-	99	94.937	Octodon_degus
ENSGACG00000017223	lsm6	96	85.714	ENSODEG00000018684	-	100	85.714	Octodon_degus
ENSGACG00000017223	lsm6	100	98.750	ENSONIG00000010005	lsm6	100	98.750	Oreochromis_niloticus
ENSGACG00000017223	lsm6	96	70.130	ENSOANG00000006895	-	99	70.130	Ornithorhynchus_anatinus
ENSGACG00000017223	lsm6	96	70.130	ENSOANG00000006894	-	99	70.130	Ornithorhynchus_anatinus
ENSGACG00000017223	lsm6	100	97.500	ENSORLG00000024158	lsm6	100	97.500	Oryzias_latipes
ENSGACG00000017223	lsm6	100	97.500	ENSORLG00020017383	lsm6	100	97.500	Oryzias_latipes_hni
ENSGACG00000017223	lsm6	100	97.500	ENSORLG00015016903	lsm6	100	97.500	Oryzias_latipes_hsok
ENSGACG00000017223	lsm6	100	98.750	ENSOMEG00000000074	lsm6	100	98.750	Oryzias_melastigma
ENSGACG00000017223	lsm6	99	96.203	ENSOGAG00000026665	-	99	96.203	Otolemur_garnettii
ENSGACG00000017223	lsm6	99	96.203	ENSOGAG00000033153	-	99	96.203	Otolemur_garnettii
ENSGACG00000017223	lsm6	86	97.101	ENSOARG00000008509	-	88	97.101	Ovis_aries
ENSGACG00000017223	lsm6	99	89.873	ENSOARG00000011641	-	92	89.873	Ovis_aries
ENSGACG00000017223	lsm6	99	96.203	ENSPPAG00000037929	LSM6	99	96.203	Pan_paniscus
ENSGACG00000017223	lsm6	99	96.203	ENSPPRG00000012806	LSM6	99	96.203	Panthera_pardus
ENSGACG00000017223	lsm6	99	96.203	ENSPTIG00000019769	LSM6	99	96.203	Panthera_tigris_altaica
ENSGACG00000017223	lsm6	99	96.203	ENSPTRG00000016488	LSM6	99	96.203	Pan_troglodytes
ENSGACG00000017223	lsm6	99	96.203	ENSPANG00000006552	LSM6	99	96.203	Papio_anubis
ENSGACG00000017223	lsm6	99	98.734	ENSPKIG00000016176	lsm6	99	98.734	Paramormyrops_kingsleyae
ENSGACG00000017223	lsm6	99	96.203	ENSPSIG00000016942	LSM6	99	96.203	Pelodiscus_sinensis
ENSGACG00000017223	lsm6	100	98.750	ENSPMGG00000018004	lsm6	100	98.750	Periophthalmus_magnuspinnatus
ENSGACG00000017223	lsm6	99	96.203	ENSPEMG00000012410	Lsm6	99	96.203	Peromyscus_maniculatus_bairdii
ENSGACG00000017223	lsm6	99	96.203	ENSPMAG00000006949	lsm6	99	96.203	Petromyzon_marinus
ENSGACG00000017223	lsm6	99	96.203	ENSPCIG00000023469	LSM6	80	97.101	Phascolarctos_cinereus
ENSGACG00000017223	lsm6	100	98.750	ENSPFOG00000008881	lsm6	100	98.750	Poecilia_formosa
ENSGACG00000017223	lsm6	100	98.750	ENSPLAG00000003202	lsm6	100	98.750	Poecilia_latipinna
ENSGACG00000017223	lsm6	100	98.750	ENSPMEG00000004000	lsm6	100	98.750	Poecilia_mexicana
ENSGACG00000017223	lsm6	100	98.750	ENSPREG00000023235	lsm6	100	98.750	Poecilia_reticulata
ENSGACG00000017223	lsm6	99	96.203	ENSPPYG00000015105	LSM6	99	96.203	Pongo_abelii
ENSGACG00000017223	lsm6	99	96.203	ENSPCOG00000013899	LSM6	99	96.203	Propithecus_coquereli
ENSGACG00000017223	lsm6	100	98.750	ENSPNYG00000012614	lsm6	100	98.750	Pundamilia_nyererei
ENSGACG00000017223	lsm6	99	98.734	ENSPNAG00000018779	lsm6	99	98.734	Pygocentrus_nattereri
ENSGACG00000017223	lsm6	99	96.203	ENSRNOG00000030374	Lsm6	99	96.203	Rattus_norvegicus
ENSGACG00000017223	lsm6	99	96.203	ENSRNOG00000049370	LOC100360750	99	96.203	Rattus_norvegicus
ENSGACG00000017223	lsm6	99	96.203	ENSRBIG00000027878	LSM6	99	96.203	Rhinopithecus_bieti
ENSGACG00000017223	lsm6	99	96.203	ENSRROG00000024868	LSM6	99	96.203	Rhinopithecus_roxellana
ENSGACG00000017223	lsm6	95	41.250	YDR378C	-	93	45.000	Saccharomyces_cerevisiae
ENSGACG00000017223	lsm6	99	69.620	ENSSBOG00000028103	-	99	69.620	Saimiri_boliviensis_boliviensis
ENSGACG00000017223	lsm6	99	96.203	ENSSBOG00000021229	-	99	96.203	Saimiri_boliviensis_boliviensis
ENSGACG00000017223	lsm6	99	98.734	ENSSFOG00015016480	lsm6	99	98.734	Scleropages_formosus
ENSGACG00000017223	lsm6	100	98.750	ENSSMAG00000004550	lsm6	100	98.750	Scophthalmus_maximus
ENSGACG00000017223	lsm6	100	98.750	ENSSDUG00000020459	lsm6	50	98.750	Seriola_dumerili
ENSGACG00000017223	lsm6	100	98.750	ENSSLDG00000020533	lsm6	83	98.750	Seriola_lalandi_dorsalis
ENSGACG00000017223	lsm6	86	100.000	ENSSLDG00000004136	-	59	100.000	Seriola_lalandi_dorsalis
ENSGACG00000017223	lsm6	59	93.617	ENSSARG00000000689	LSM6	98	93.617	Sorex_araneus
ENSGACG00000017223	lsm6	99	96.203	ENSSPUG00000008657	LSM6	99	96.203	Sphenodon_punctatus
ENSGACG00000017223	lsm6	100	98.750	ENSSPAG00000003246	lsm6	100	98.750	Stegastes_partitus
ENSGACG00000017223	lsm6	99	96.203	ENSSSCG00000035973	LSM6	99	96.203	Sus_scrofa
ENSGACG00000017223	lsm6	99	96.203	ENSTGUG00000002663	LSM6	99	96.203	Taeniopygia_guttata
ENSGACG00000017223	lsm6	100	98.750	ENSTRUG00000023398	lsm6	100	98.750	Takifugu_rubripes
ENSGACG00000017223	lsm6	100	98.750	ENSTNIG00000017725	lsm6	100	98.750	Tetraodon_nigroviridis
ENSGACG00000017223	lsm6	99	96.203	ENSTTRG00000004609	LSM6	99	96.203	Tursiops_truncatus
ENSGACG00000017223	lsm6	98	88.462	ENSUAMG00000014213	LSM6	64	88.462	Ursus_americanus
ENSGACG00000017223	lsm6	98	88.462	ENSUMAG00000015727	LSM6	64	88.462	Ursus_maritimus
ENSGACG00000017223	lsm6	99	96.203	ENSVPAG00000006922	LSM6	99	96.203	Vicugna_pacos
ENSGACG00000017223	lsm6	99	96.203	ENSVVUG00000009254	LSM6	68	96.203	Vulpes_vulpes
ENSGACG00000017223	lsm6	99	96.203	ENSXETG00000023683	lsm6	99	96.203	Xenopus_tropicalis
ENSGACG00000017223	lsm6	100	98.750	ENSXMAG00000009606	lsm6	100	98.750	Xiphophorus_maculatus