EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000019366 (Gene tree)
Gene ID: -
Gene Symbol: polr2a
Alias: im:7136071
Full Name: polymerase (RNA) II (DNA directed) polypeptide A
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 9721 bases
Position: chrgroupVII:4293183-4302903
Accession: ZDB-GENE-041008-78
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000025599	RNA_pol_Rpb1_5	PF04998.17	1.5e-92	1	1
ENSGACP00000025599	RNA_pol_Rpb1_4	PF05000.17	7e-38	1	1
ENSGACP00000025599	RNA_pol_Rpb1_2	PF00623.20	5.7e-75	1	1
ENSGACP00000025599	RNA_pol_Rpb1_3	PF04983.18	1.5e-50	1	1
ENSGACP00000025599	RNA_pol_Rpb1_1	PF04997.12	4.3e-109	1	1
ENSGACP00000025599	RNA_pol_Rpb1_7	PF04990.12	1.3e-55	1	1
ENSGACP00000025599	RNA_pol_Rpb1_6	PF04992.14	1.4e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000025649	-	4959	-	ENSGACP00000025599	1653 (aa)	-	G3Q6T9

Gene Model

Click here to download ENSGACG00000019366's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000019366's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000019366	polr2a	79	38.022	ENSGACG00000002304	polr3a	91	38.022
ENSGACG00000019366	polr2a	68	33.333	ENSGACG00000018791	polr1a	68	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000019366	polr2a	99	94.279	ENSAPOG00000006552	polr2a	91	94.498	Acanthochromis_polyacanthus
ENSGACG00000019366	polr2a	100	87.915	ENSAMEG00000016265	-	99	90.404	Ailuropoda_melanoleuca
ENSGACG00000019366	polr2a	100	93.540	ENSACIG00000015982	polr2a	99	91.100	Amphilophus_citrinellus
ENSGACG00000019366	polr2a	100	94.110	ENSAOCG00000004255	polr2a	99	91.642	Amphiprion_ocellaris
ENSGACG00000019366	polr2a	100	94.400	ENSAPEG00000012623	polr2a	99	94.619	Amphiprion_percula
ENSGACG00000019366	polr2a	100	94.096	ENSATEG00000019644	polr2a	99	94.317	Anabas_testudineus
ENSGACG00000019366	polr2a	99	88.539	ENSACAG00000014561	POLR2A	99	91.047	Anolis_carolinensis
ENSGACG00000019366	polr2a	100	88.249	ENSANAG00000020093	-	99	90.750	Aotus_nancymaae
ENSGACG00000019366	polr2a	100	93.914	ENSACLG00000006735	polr2a	99	94.135	Astatotilapia_calliptera
ENSGACG00000019366	polr2a	100	93.061	ENSAMXG00000020046	polr2a	99	93.289	Astyanax_mexicanus
ENSGACG00000019366	polr2a	100	88.249	ENSBTAG00000046765	POLR2A	99	90.750	Bos_taurus
ENSGACG00000019366	polr2a	99	68.267	WBGene00000123	ama-1	99	68.332	Caenorhabditis_elegans
ENSGACG00000019366	polr2a	100	88.190	ENSCAFG00000016532	POLR2A	99	90.689	Canis_familiaris
ENSGACG00000019366	polr2a	100	87.367	ENSCAFG00020007929	-	99	89.849	Canis_lupus_dingo
ENSGACG00000019366	polr2a	100	88.249	ENSCHIG00000027173	-	99	90.750	Capra_hircus
ENSGACG00000019366	polr2a	100	87.743	ENSTSYG00000012803	-	99	89.096	Carlito_syrichta
ENSGACG00000019366	polr2a	98	93.094	ENSCAPG00000001882	-	99	90.663	Cavia_aperea
ENSGACG00000019366	polr2a	100	93.081	ENSCPOG00000014812	-	99	90.629	Cavia_porcellus
ENSGACG00000019366	polr2a	100	88.249	ENSCCAG00000020938	-	99	90.750	Cebus_capucinus
ENSGACG00000019366	polr2a	100	88.249	ENSCATG00000013680	-	99	90.750	Cercocebus_atys
ENSGACG00000019366	polr2a	100	88.131	ENSCLAG00000012196	-	99	90.629	Chinchilla_lanigera
ENSGACG00000019366	polr2a	100	80.483	ENSCSAG00000011644	-	99	82.823	Chlorocebus_sabaeus
ENSGACG00000019366	polr2a	100	86.954	ENSCPBG00000012697	POLR2A	98	87.424	Chrysemys_picta_bellii
ENSGACG00000019366	polr2a	99	74.487	ENSCING00000007884	-	99	74.955	Ciona_intestinalis
ENSGACG00000019366	polr2a	99	73.636	ENSCSAVG00000008334	-	99	73.408	Ciona_savignyi
ENSGACG00000019366	polr2a	100	87.596	ENSCANG00000010622	-	99	90.085	Colobus_angolensis_palliatus
ENSGACG00000019366	polr2a	100	93.488	ENSCSEG00000002635	polr2a	99	93.712	Cynoglossus_semilaevis
ENSGACG00000019366	polr2a	100	93.731	ENSCVAG00000005156	polr2a	99	93.954	Cyprinodon_variegatus
ENSGACG00000019366	polr2a	100	92.676	ENSDARG00000099966	polr2a	99	93.205	Danio_rerio
ENSGACG00000019366	polr2a	100	88.986	ENSDNOG00000016482	-	99	88.150	Dasypus_novemcinctus
ENSGACG00000019366	polr2a	100	88.249	ENSDORG00000008667	Polr2a	99	90.750	Dipodomys_ordii
ENSGACG00000019366	polr2a	99	71.911	FBgn0003277	RpII215	98	72.596	Drosophila_melanogaster
ENSGACG00000019366	polr2a	93	84.181	ENSETEG00000002540	-	88	86.031	Echinops_telfairi
ENSGACG00000019366	polr2a	100	83.881	ENSEBUG00000013967	polr2a	99	84.258	Eptatretus_burgeri
ENSGACG00000019366	polr2a	100	86.350	ENSEASG00005019114	-	99	88.815	Equus_asinus_asinus
ENSGACG00000019366	polr2a	100	88.249	ENSECAG00000018485	POLR2A	99	90.750	Equus_caballus
ENSGACG00000019366	polr2a	90	93.173	ENSEEUG00000001154	-	94	93.173	Erinaceus_europaeus
ENSGACG00000019366	polr2a	99	89.595	ENSELUG00000014284	polr2a	99	89.844	Esox_lucius
ENSGACG00000019366	polr2a	100	88.309	ENSFDAG00000008287	-	99	90.810	Fukomys_damarensis
ENSGACG00000019366	polr2a	100	93.670	ENSFHEG00000001768	polr2a	99	93.894	Fundulus_heteroclitus
ENSGACG00000019366	polr2a	100	93.901	ENSGMOG00000007725	polr2a	100	93.901	Gadus_morhua
ENSGACG00000019366	polr2a	100	93.853	ENSGAFG00000005389	polr2a	99	94.075	Gambusia_affinis
ENSGACG00000019366	polr2a	100	86.264	ENSGGOG00000014800	-	96	92.959	Gorilla_gorilla
ENSGACG00000019366	polr2a	100	93.914	ENSHBUG00000018937	polr2a	99	94.135	Haplochromis_burtoni
ENSGACG00000019366	polr2a	100	88.309	ENSHGLG00000012381	POLR2A	99	90.810	Heterocephalus_glaber_female
ENSGACG00000019366	polr2a	100	88.309	ENSHGLG00100014843	POLR2A	99	90.810	Heterocephalus_glaber_male
ENSGACG00000019366	polr2a	100	93.609	ENSHCOG00000011874	polr2a	99	93.833	Hippocampus_comes
ENSGACG00000019366	polr2a	100	92.696	ENSIPUG00000002613	Polr2a	99	92.926	Ictalurus_punctatus
ENSGACG00000019366	polr2a	100	88.249	ENSSTOG00000001304	-	99	90.750	Ictidomys_tridecemlineatus
ENSGACG00000019366	polr2a	100	88.249	ENSJJAG00000013049	Polr2a	99	90.750	Jaculus_jaculus
ENSGACG00000019366	polr2a	96	95.402	ENSKMAG00000016343	polr2a	85	95.402	Kryptolebias_marmoratus
ENSGACG00000019366	polr2a	100	94.827	ENSLBEG00000027652	polr2a	99	95.042	Labrus_bergylta
ENSGACG00000019366	polr2a	98	79.819	ENSLACG00000012071	POLR2A	99	82.248	Latimeria_chalumnae
ENSGACG00000019366	polr2a	100	92.010	ENSLOCG00000013863	polr2a	99	93.245	Lepisosteus_oculatus
ENSGACG00000019366	polr2a	100	91.677	ENSLAFG00000008626	-	99	90.750	Loxodonta_africana
ENSGACG00000019366	polr2a	59	93.224	ENSMFAG00000007042	-	99	93.224	Macaca_fascicularis
ENSGACG00000019366	polr2a	100	88.249	ENSMMUG00000023620	-	99	90.750	Macaca_mulatta
ENSGACG00000019366	polr2a	100	87.834	ENSMNEG00000040407	-	99	90.326	Macaca_nemestrina
ENSGACG00000019366	polr2a	98	84.620	ENSMLEG00000030263	-	99	93.224	Mandrillus_leucophaeus
ENSGACG00000019366	polr2a	100	94.035	ENSMAMG00000003351	polr2a	99	94.256	Mastacembelus_armatus
ENSGACG00000019366	polr2a	100	93.914	ENSMZEG00005021429	polr2a	99	94.135	Maylandia_zebra
ENSGACG00000019366	polr2a	59	93.986	ENSMAUG00000021055	-	99	93.986	Mesocricetus_auratus
ENSGACG00000019366	polr2a	100	88.190	ENSMICG00000013372	-	98	93.621	Microcebus_murinus
ENSGACG00000019366	polr2a	100	87.508	ENSMOCG00000018279	Polr2a	96	86.587	Microtus_ochrogaster
ENSGACG00000019366	polr2a	100	93.366	ENSMMOG00000012515	polr2a	96	93.591	Mola_mola
ENSGACG00000019366	polr2a	100	88.012	ENSMODG00000007009	-	99	90.508	Monodelphis_domestica
ENSGACG00000019366	polr2a	100	93.652	ENSMALG00000008716	polr2a	96	94.217	Monopterus_albus
ENSGACG00000019366	polr2a	100	88.249	MGP_CAROLIEiJ_G0016587	Polr2a	99	90.750	Mus_caroli
ENSGACG00000019366	polr2a	100	88.249	ENSMUSG00000005198	Polr2a	99	90.750	Mus_musculus
ENSGACG00000019366	polr2a	100	86.229	MGP_PahariEiJ_G0017718	Polr2a	99	88.682	Mus_pahari
ENSGACG00000019366	polr2a	100	88.249	MGP_SPRETEiJ_G0017423	Polr2a	99	90.750	Mus_spretus
ENSGACG00000019366	polr2a	100	88.249	ENSMPUG00000009648	-	99	90.750	Mustela_putorius_furo
ENSGACG00000019366	polr2a	100	87.789	ENSMLUG00000009088	-	99	90.278	Myotis_lucifugus
ENSGACG00000019366	polr2a	100	88.249	ENSNGAG00000002543	Polr2a	99	90.750	Nannospalax_galili
ENSGACG00000019366	polr2a	100	93.984	ENSNBRG00000002005	polr2a	99	91.521	Neolamprologus_brichardi
ENSGACG00000019366	polr2a	100	87.743	ENSNLEG00000009460	-	99	89.324	Nomascus_leucogenys
ENSGACG00000019366	polr2a	93	85.500	ENSMEUG00000008611	-	91	85.500	Notamacropus_eugenii
ENSGACG00000019366	polr2a	94	93.017	ENSOPRG00000015116	-	99	92.785	Ochotona_princeps
ENSGACG00000019366	polr2a	100	94.096	ENSONIG00000009231	polr2a	99	94.317	Oreochromis_niloticus
ENSGACG00000019366	polr2a	56	93.462	ENSOANG00000003303	-	98	93.462	Ornithorhynchus_anatinus
ENSGACG00000019366	polr2a	100	89.686	ENSOCUG00000017929	-	99	90.445	Oryctolagus_cuniculus
ENSGACG00000019366	polr2a	100	93.366	ENSORLG00000006431	polr2a	99	93.591	Oryzias_latipes
ENSGACG00000019366	polr2a	100	93.366	ENSORLG00020010235	polr2a	99	93.591	Oryzias_latipes_hni
ENSGACG00000019366	polr2a	100	93.366	ENSORLG00015007075	polr2a	99	93.591	Oryzias_latipes_hsok
ENSGACG00000019366	polr2a	99	93.248	ENSOMEG00000010713	polr2a	99	96.081	Oryzias_melastigma
ENSGACG00000019366	polr2a	100	88.249	ENSOGAG00000033608	-	99	90.750	Otolemur_garnettii
ENSGACG00000019366	polr2a	99	88.249	ENSOARG00000013874	-	99	90.750	Ovis_aries
ENSGACG00000019366	polr2a	94	92.263	ENSPPAG00000043734	-	99	88.882	Pan_paniscus
ENSGACG00000019366	polr2a	100	87.743	ENSPTRG00000008691	POLR2A	99	89.324	Pan_troglodytes
ENSGACG00000019366	polr2a	100	87.596	ENSPANG00000024099	-	99	90.085	Papio_anubis
ENSGACG00000019366	polr2a	94	95.093	ENSPKIG00000005727	polr2a	84	95.093	Paramormyrops_kingsleyae
ENSGACG00000019366	polr2a	100	87.122	ENSPSIG00000014006	POLR2A	99	89.130	Pelodiscus_sinensis
ENSGACG00000019366	polr2a	100	94.263	ENSPMGG00000019734	polr2a	99	94.263	Periophthalmus_magnuspinnatus
ENSGACG00000019366	polr2a	100	88.249	ENSPEMG00000012521	Polr2a	99	90.750	Peromyscus_maniculatus_bairdii
ENSGACG00000019366	polr2a	99	89.879	ENSPCIG00000028851	-	82	89.879	Phascolarctos_cinereus
ENSGACG00000019366	polr2a	100	93.792	ENSPFOG00000007890	polr2a	99	94.015	Poecilia_formosa
ENSGACG00000019366	polr2a	100	93.792	ENSPLAG00000007399	polr2a	99	94.015	Poecilia_latipinna
ENSGACG00000019366	polr2a	100	93.792	ENSPMEG00000002071	polr2a	99	94.015	Poecilia_mexicana
ENSGACG00000019366	polr2a	100	93.731	ENSPREG00000013122	polr2a	99	93.954	Poecilia_reticulata
ENSGACG00000019366	polr2a	100	88.249	ENSPPYG00000007924	-	99	90.750	Pongo_abelii
ENSGACG00000019366	polr2a	90	95.099	ENSPCAG00000006951	-	91	95.099	Procavia_capensis
ENSGACG00000019366	polr2a	100	87.743	ENSPCOG00000025260	-	99	89.515	Propithecus_coquereli
ENSGACG00000019366	polr2a	99	88.005	ENSPVAG00000005069	-	99	90.502	Pteropus_vampyrus
ENSGACG00000019366	polr2a	100	93.974	ENSPNYG00000022340	polr2a	99	94.196	Pundamilia_nyererei
ENSGACG00000019366	polr2a	100	93.061	ENSPNAG00000011237	polr2a	99	93.289	Pygocentrus_nattereri
ENSGACG00000019366	polr2a	100	88.190	ENSRNOG00000028834	Polr2a	99	90.689	Rattus_norvegicus
ENSGACG00000019366	polr2a	100	87.743	ENSRBIG00000002471	-	99	88.694	Rhinopithecus_bieti
ENSGACG00000019366	polr2a	100	88.249	ENSRROG00000029583	-	99	90.750	Rhinopithecus_roxellana
ENSGACG00000019366	polr2a	94	49.718	YDL140C	RPO21	99	49.381	Saccharomyces_cerevisiae
ENSGACG00000019366	polr2a	100	88.249	ENSSBOG00000000808	-	99	90.750	Saimiri_boliviensis_boliviensis
ENSGACG00000019366	polr2a	100	88.012	ENSSHAG00000002858	-	99	90.508	Sarcophilus_harrisii
ENSGACG00000019366	polr2a	100	92.940	ENSSFOG00015023275	polr2a	99	93.168	Scleropages_formosus
ENSGACG00000019366	polr2a	100	93.792	ENSSMAG00000009137	polr2a	99	94.015	Scophthalmus_maximus
ENSGACG00000019366	polr2a	100	94.583	ENSSDUG00000020466	polr2a	99	94.800	Seriola_dumerili
ENSGACG00000019366	polr2a	100	94.644	ENSSLDG00000020613	polr2a	99	94.861	Seriola_lalandi_dorsalis
ENSGACG00000019366	polr2a	99	86.901	ENSSARG00000005875	-	98	87.372	Sorex_araneus
ENSGACG00000019366	polr2a	100	94.583	ENSSPAG00000016741	polr2a	92	94.800	Stegastes_partitus
ENSGACG00000019366	polr2a	100	87.359	ENSSSCG00000028278	-	99	89.843	Sus_scrofa
ENSGACG00000019366	polr2a	99	88.317	ENSTRUG00000012320	polr2a	81	73.409	Takifugu_rubripes
ENSGACG00000019366	polr2a	100	92.308	ENSTNIG00000010136	polr2a	99	92.866	Tetraodon_nigroviridis
ENSGACG00000019366	polr2a	70	93.438	ENSTBEG00000013294	-	57	93.438	Tupaia_belangeri
ENSGACG00000019366	polr2a	100	86.647	ENSTTRG00000014273	-	99	89.117	Tursiops_truncatus
ENSGACG00000019366	polr2a	99	87.863	ENSUAMG00000014866	-	99	90.350	Ursus_americanus
ENSGACG00000019366	polr2a	91	91.954	ENSUMAG00000015732	-	98	91.954	Ursus_maritimus
ENSGACG00000019366	polr2a	55	97.283	ENSVPAG00000008842	-	76	97.283	Vicugna_pacos
ENSGACG00000019366	polr2a	100	88.190	ENSVVUG00000027878	-	99	90.689	Vulpes_vulpes
ENSGACG00000019366	polr2a	99	88.129	ENSXETG00000012465	polr2a	99	90.654	Xenopus_tropicalis
ENSGACG00000019366	polr2a	100	90.491	ENSXCOG00000001804	polr2a	99	90.659	Xiphophorus_couchianus
ENSGACG00000019366	polr2a	100	93.731	ENSXMAG00000015687	polr2a	99	93.954	Xiphophorus_maculatus