EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000019401 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c2
Alias: si:dkey-10p5.9
Full Name: trinucleotide repeat containing 6C2
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 21019 bases
Position: chrgroupIX:17270999-17292017
Accession: ZDB-GENE-061207-48
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000025645	Ago_hook	PF10427.9	4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000025695	-	5331	-	ENSGACP00000025645	1776 (aa)	-	G3Q6Y5

Gene Model

Click here to download ENSGACG00000019401's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000019401's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000019401	tnrc6c2	99	51.099	ENSGACG00000012320	tnrc6c1	97	51.628

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000019401	tnrc6c2	90	76.766	ENSATEG00000003656	tnrc6c2	100	77.943	Anabas_testudineus
ENSGACG00000019401	tnrc6c2	100	74.200	ENSACLG00000006469	tnrc6c2	99	67.808	Astatotilapia_calliptera
ENSGACG00000019401	tnrc6c2	90	54.763	ENSAMXG00000009579	tnrc6c2	100	54.337	Astyanax_mexicanus
ENSGACG00000019401	tnrc6c2	94	55.063	ENSDARG00000103851	tnrc6c2	100	54.655	Danio_rerio
ENSGACG00000019401	tnrc6c2	85	68.528	ENSELUG00000008149	-	99	50.218	Esox_lucius
ENSGACG00000019401	tnrc6c2	90	60.454	ENSELUG00000007206	tnrc6c2	100	60.081	Esox_lucius
ENSGACG00000019401	tnrc6c2	94	72.136	ENSFHEG00000003901	tnrc6c2	100	72.041	Fundulus_heteroclitus
ENSGACG00000019401	tnrc6c2	100	74.267	ENSHBUG00000018310	tnrc6c2	99	67.667	Haplochromis_burtoni
ENSGACG00000019401	tnrc6c2	90	51.090	ENSIPUG00000022767	tnrc6c2	100	49.940	Ictalurus_punctatus
ENSGACG00000019401	tnrc6c2	90	77.851	ENSMAMG00000001718	tnrc6c2	100	76.711	Mastacembelus_armatus
ENSGACG00000019401	tnrc6c2	100	74.200	ENSMZEG00005023905	tnrc6c2	99	67.808	Maylandia_zebra
ENSGACG00000019401	tnrc6c2	90	77.102	ENSMALG00000020932	tnrc6c2	100	70.616	Monopterus_albus
ENSGACG00000019401	tnrc6c2	90	75.449	ENSNBRG00000000452	tnrc6c2	100	76.069	Neolamprologus_brichardi
ENSGACG00000019401	tnrc6c2	88	78.275	ENSONIG00000018123	tnrc6c2	100	78.450	Oreochromis_niloticus
ENSGACG00000019401	tnrc6c2	99	70.000	ENSORLG00000003327	tnrc6c2	98	70.172	Oryzias_latipes
ENSGACG00000019401	tnrc6c2	99	70.054	ENSORLG00020010730	tnrc6c2	98	70.011	Oryzias_latipes_hni
ENSGACG00000019401	tnrc6c2	99	70.206	ENSORLG00015009232	tnrc6c2	98	70.339	Oryzias_latipes_hsok
ENSGACG00000019401	tnrc6c2	99	71.937	ENSOMEG00000017952	tnrc6c2	98	72.004	Oryzias_melastigma
ENSGACG00000019401	tnrc6c2	98	64.191	ENSPFOG00000011590	tnrc6c2	99	64.709	Poecilia_formosa
ENSGACG00000019401	tnrc6c2	90	71.385	ENSPLAG00000006992	tnrc6c2	100	71.385	Poecilia_latipinna
ENSGACG00000019401	tnrc6c2	100	72.267	ENSPMEG00000012946	tnrc6c2	98	73.291	Poecilia_mexicana
ENSGACG00000019401	tnrc6c2	90	72.032	ENSPREG00000015823	tnrc6c2	100	72.399	Poecilia_reticulata
ENSGACG00000019401	tnrc6c2	90	76.228	ENSPNYG00000002582	tnrc6c2	100	68.713	Pundamilia_nyererei
ENSGACG00000019401	tnrc6c2	90	54.469	ENSPNAG00000026838	tnrc6c2	100	54.337	Pygocentrus_nattereri
ENSGACG00000019401	tnrc6c2	90	77.433	ENSSMAG00000015145	tnrc6c2	57	81.543	Scophthalmus_maximus
ENSGACG00000019401	tnrc6c2	90	78.979	ENSSDUG00000020741	tnrc6c2	57	82.273	Seriola_dumerili
ENSGACG00000019401	tnrc6c2	90	79.219	ENSSLDG00000002077	tnrc6c2	57	82.273	Seriola_lalandi_dorsalis
ENSGACG00000019401	tnrc6c2	100	76.837	ENSSPAG00000013052	tnrc6c2	50	81.913	Stegastes_partitus
ENSGACG00000019401	tnrc6c2	94	69.935	ENSTNIG00000004178	tnrc6c2	97	79.217	Tetraodon_nigroviridis
ENSGACG00000019401	tnrc6c2	90	71.057	ENSXCOG00000013252	tnrc6c2	100	71.782	Xiphophorus_couchianus
ENSGACG00000019401	tnrc6c2	90	73.719	ENSXMAG00000006739	tnrc6c2	100	73.297	Xiphophorus_maculatus