EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000019497 (Gene tree)
Gene ID: -
Gene Symbol: apex1
Alias: hm:zehn1532|wu:fc13d11|zap1|zgc:66204
Full Name: APEX nuclease (multifunctional DNA repair enzyme) 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 3002 bases
Position: chrgroupIV:25509908-25512909
Accession: ZDB-GENE-040426-2761
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000025771	Exo_endo_phos	PF03372.23	2.3e-20	1	1
ENSGACP00000025776	Exo_endo_phos	PF03372.23	2.4e-20	1	1
ENSGACP00000025774	Exo_endo_phos	PF03372.23	2.4e-20	1	1
ENSGACP00000025769	Exo_endo_phos	PF03372.23	3.9e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000025826	-	809	-	ENSGACP00000025776	269 (aa)	-	G3Q7B6
ENSGACT00000025824	-	1078	-	ENSGACP00000025774	269 (aa)	-	G3Q7B4
ENSGACT00000025819	-	1463	-	ENSGACP00000025769	311 (aa)	-	G3Q7A9
ENSGACT00000025821	-	1082	-	ENSGACP00000025771	267 (aa)	-	G3Q7B1

Gene Model

Click here to download ENSGACG00000019497's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000019497's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000019497	apex1	99	69.173	ENSG00000100823	APEX1	99	64.873	Homo_sapiens
ENSGACG00000019497	apex1	100	89.139	ENSAPOG00000017002	apex1	100	87.419	Acanthochromis_polyacanthus
ENSGACG00000019497	apex1	99	69.173	ENSAMEG00000005418	APEX1	99	64.873	Ailuropoda_melanoleuca
ENSGACG00000019497	apex1	99	91.729	ENSACIG00000010653	apex1	95	91.429	Amphilophus_citrinellus
ENSGACG00000019497	apex1	99	90.226	ENSAOCG00000009649	apex1	100	88.387	Amphiprion_ocellaris
ENSGACG00000019497	apex1	99	90.602	ENSAPEG00000021453	apex1	100	88.710	Amphiprion_percula
ENSGACG00000019497	apex1	99	92.453	ENSATEG00000002883	apex1	97	91.262	Anabas_testudineus
ENSGACG00000019497	apex1	99	72.932	ENSACAG00000008099	APEX1	99	69.182	Anolis_carolinensis
ENSGACG00000019497	apex1	99	69.925	ENSANAG00000030117	APEX1	99	65.823	Aotus_nancymaae
ENSGACG00000019497	apex1	99	90.977	ENSACLG00000018441	apex1	100	89.355	Astatotilapia_calliptera
ENSGACG00000019497	apex1	99	87.594	ENSAMXG00000034699	apex1	99	84.839	Astyanax_mexicanus
ENSGACG00000019497	apex1	99	68.797	ENSBTAG00000002745	APEX1	99	65.190	Bos_taurus
ENSGACG00000019497	apex1	98	45.038	WBGene00001372	exo-3	92	44.737	Caenorhabditis_elegans
ENSGACG00000019497	apex1	99	69.925	ENSCJAG00000009726	APEX1	99	65.823	Callithrix_jacchus
ENSGACG00000019497	apex1	99	69.549	ENSCAFG00000032033	APEX1	99	66.246	Canis_familiaris
ENSGACG00000019497	apex1	99	69.549	ENSCAFG00020014377	-	99	66.246	Canis_lupus_dingo
ENSGACG00000019497	apex1	53	59.649	ENSCAFG00020023002	-	94	60.234	Canis_lupus_dingo
ENSGACG00000019497	apex1	99	54.887	ENSCHIG00000014537	-	89	53.597	Capra_hircus
ENSGACG00000019497	apex1	99	68.797	ENSCHIG00000007298	-	99	65.190	Capra_hircus
ENSGACG00000019497	apex1	99	67.669	ENSTSYG00000034813	APEX1	99	64.241	Carlito_syrichta
ENSGACG00000019497	apex1	96	65.637	ENSCAPG00000016235	APEX1	91	69.492	Cavia_aperea
ENSGACG00000019497	apex1	99	69.173	ENSCPOG00000030909	APEX1	88	69.534	Cavia_porcellus
ENSGACG00000019497	apex1	99	69.925	ENSCCAG00000033056	-	99	65.823	Cebus_capucinus
ENSGACG00000019497	apex1	99	59.774	ENSCCAG00000031931	-	99	56.329	Cebus_capucinus
ENSGACG00000019497	apex1	99	68.797	ENSCATG00000015580	APEX1	99	64.557	Cercocebus_atys
ENSGACG00000019497	apex1	99	68.421	ENSCLAG00000001002	APEX1	99	64.557	Chinchilla_lanigera
ENSGACG00000019497	apex1	99	69.173	ENSCSAG00000016670	-	99	64.873	Chlorocebus_sabaeus
ENSGACG00000019497	apex1	99	69.173	ENSCSAG00000016685	-	99	64.873	Chlorocebus_sabaeus
ENSGACG00000019497	apex1	99	75.188	ENSCPBG00000009567	APEX1	99	70.570	Chrysemys_picta_bellii
ENSGACG00000019497	apex1	99	58.647	ENSCING00000008137	-	85	58.801	Ciona_intestinalis
ENSGACG00000019497	apex1	99	52.060	ENSCSAVG00000007144	-	100	53.488	Ciona_savignyi
ENSGACG00000019497	apex1	99	69.173	ENSCANG00000030726	APEX1	88	69.176	Colobus_angolensis_palliatus
ENSGACG00000019497	apex1	99	68.797	ENSCGRG00001017046	Apex1	99	64.984	Cricetulus_griseus_chok1gshd
ENSGACG00000019497	apex1	99	68.797	ENSCGRG00000008984	Apex1	99	64.984	Cricetulus_griseus_crigri
ENSGACG00000019497	apex1	99	89.474	ENSCSEG00000017499	apex1	99	86.774	Cynoglossus_semilaevis
ENSGACG00000019497	apex1	99	92.075	ENSCVAG00000022075	apex1	100	90.000	Cyprinodon_variegatus
ENSGACG00000019497	apex1	99	86.466	ENSDARG00000045843	apex1	99	84.142	Danio_rerio
ENSGACG00000019497	apex1	99	65.789	ENSDNOG00000042234	APEX1	94	61.709	Dasypus_novemcinctus
ENSGACG00000019497	apex1	99	68.797	ENSDORG00000001616	Apex1	99	64.557	Dipodomys_ordii
ENSGACG00000019497	apex1	99	69.549	ENSETEG00000004855	-	99	65.506	Echinops_telfairi
ENSGACG00000019497	apex1	89	59.664	ENSEBUG00000000622	-	92	59.664	Eptatretus_burgeri
ENSGACG00000019497	apex1	99	69.549	ENSEASG00005017489	APEX1	73	64.873	Equus_asinus_asinus
ENSGACG00000019497	apex1	99	69.549	ENSECAG00000022325	APEX1	81	64.873	Equus_caballus
ENSGACG00000019497	apex1	96	69.531	ENSEEUG00000012569	APEX1	93	69.517	Erinaceus_europaeus
ENSGACG00000019497	apex1	99	87.970	ENSELUG00000021706	apex1	99	85.161	Esox_lucius
ENSGACG00000019497	apex1	99	69.925	ENSFCAG00000030869	APEX1	99	65.506	Felis_catus
ENSGACG00000019497	apex1	99	69.925	ENSFDAG00000006120	APEX1	99	65.823	Fukomys_damarensis
ENSGACG00000019497	apex1	99	90.566	ENSFHEG00000009031	apex1	84	89.389	Fundulus_heteroclitus
ENSGACG00000019497	apex1	99	79.623	ENSGMOG00000007943	apex1	99	76.774	Gadus_morhua
ENSGACG00000019497	apex1	99	92.105	ENSGAFG00000005311	apex1	100	89.355	Gambusia_affinis
ENSGACG00000019497	apex1	99	74.812	ENSGAGG00000014999	APEX1	99	70.253	Gopherus_agassizii
ENSGACG00000019497	apex1	99	68.797	ENSGGOG00000002128	APEX1	99	64.557	Gorilla_gorilla
ENSGACG00000019497	apex1	99	90.977	ENSHBUG00000005894	apex1	100	89.032	Haplochromis_burtoni
ENSGACG00000019497	apex1	99	69.925	ENSHGLG00000002848	APEX1	99	66.246	Heterocephalus_glaber_female
ENSGACG00000019497	apex1	99	69.925	ENSHGLG00100017878	APEX1	99	66.246	Heterocephalus_glaber_male
ENSGACG00000019497	apex1	99	90.566	ENSHCOG00000009961	apex1	100	87.460	Hippocampus_comes
ENSGACG00000019497	apex1	99	86.090	ENSIPUG00000005799	apex1	99	82.524	Ictalurus_punctatus
ENSGACG00000019497	apex1	99	68.797	ENSSTOG00000010096	APEX1	99	65.190	Ictidomys_tridecemlineatus
ENSGACG00000019497	apex1	99	60.526	ENSJJAG00000020465	-	90	60.932	Jaculus_jaculus
ENSGACG00000019497	apex1	99	68.421	ENSJJAG00000012067	-	99	64.557	Jaculus_jaculus
ENSGACG00000019497	apex1	99	60.150	ENSJJAG00000003660	-	99	57.278	Jaculus_jaculus
ENSGACG00000019497	apex1	99	89.850	ENSKMAG00000021171	apex1	100	88.065	Kryptolebias_marmoratus
ENSGACG00000019497	apex1	99	90.226	ENSLBEG00000010248	apex1	100	90.000	Labrus_bergylta
ENSGACG00000019497	apex1	99	78.195	ENSLACG00000008617	APEX1	87	78.467	Latimeria_chalumnae
ENSGACG00000019497	apex1	99	80.827	ENSLOCG00000015516	apex1	99	76.358	Lepisosteus_oculatus
ENSGACG00000019497	apex1	99	69.925	ENSLAFG00000021872	APEX1	99	65.506	Loxodonta_africana
ENSGACG00000019497	apex1	99	68.797	ENSMFAG00000002565	APEX1	99	64.557	Macaca_fascicularis
ENSGACG00000019497	apex1	99	68.797	ENSMMUG00000048039	APEX1	99	64.557	Macaca_mulatta
ENSGACG00000019497	apex1	99	68.797	ENSMNEG00000036944	APEX1	99	64.557	Macaca_nemestrina
ENSGACG00000019497	apex1	99	68.797	ENSMLEG00000042125	APEX1	99	64.557	Mandrillus_leucophaeus
ENSGACG00000019497	apex1	99	92.105	ENSMAMG00000023526	apex1	100	90.645	Mastacembelus_armatus
ENSGACG00000019497	apex1	99	90.977	ENSMZEG00005014187	apex1	100	89.355	Maylandia_zebra
ENSGACG00000019497	apex1	99	68.045	ENSMAUG00000013994	Apex1	99	64.241	Mesocricetus_auratus
ENSGACG00000019497	apex1	99	68.421	ENSMICG00000043554	APEX1	99	64.241	Microcebus_murinus
ENSGACG00000019497	apex1	99	69.925	ENSMOCG00000013721	Apex1	99	65.397	Microtus_ochrogaster
ENSGACG00000019497	apex1	99	90.262	ENSMMOG00000010031	apex1	97	86.538	Mola_mola
ENSGACG00000019497	apex1	99	68.421	ENSMODG00000007125	APEX1	97	64.423	Monodelphis_domestica
ENSGACG00000019497	apex1	99	83.083	ENSMALG00000011699	apex1	75	83.571	Monopterus_albus
ENSGACG00000019497	apex1	99	69.811	MGP_CAROLIEiJ_G0019209	Apex1	99	66.456	Mus_caroli
ENSGACG00000019497	apex1	99	69.549	ENSMUSG00000035960	Apex1	99	66.246	Mus_musculus
ENSGACG00000019497	apex1	99	69.549	MGP_PahariEiJ_G0030232	Apex1	99	66.246	Mus_pahari
ENSGACG00000019497	apex1	99	69.549	MGP_SPRETEiJ_G0020101	Apex1	99	66.246	Mus_spretus
ENSGACG00000019497	apex1	99	68.797	ENSMLUG00000028957	APEX1	87	68.459	Myotis_lucifugus
ENSGACG00000019497	apex1	99	49.071	ENSNGAG00000021748	-	85	52.158	Nannospalax_galili
ENSGACG00000019497	apex1	99	69.925	ENSNGAG00000002725	-	99	65.931	Nannospalax_galili
ENSGACG00000019497	apex1	99	90.977	ENSNBRG00000005334	apex1	92	89.389	Neolamprologus_brichardi
ENSGACG00000019497	apex1	99	68.797	ENSNLEG00000010839	APEX1	99	65.595	Nomascus_leucogenys
ENSGACG00000019497	apex1	99	68.797	ENSMEUG00000014519	APEX1	99	65.176	Notamacropus_eugenii
ENSGACG00000019497	apex1	99	68.421	ENSOPRG00000014029	APEX1	99	65.506	Ochotona_princeps
ENSGACG00000019497	apex1	99	54.511	ENSODEG00000006583	-	87	53.684	Octodon_degus
ENSGACG00000019497	apex1	99	69.549	ENSODEG00000001703	-	99	65.506	Octodon_degus
ENSGACG00000019497	apex1	94	56.126	ENSODEG00000004777	-	83	56.126	Octodon_degus
ENSGACG00000019497	apex1	99	91.353	ENSONIG00000012089	apex1	100	89.355	Oreochromis_niloticus
ENSGACG00000019497	apex1	99	69.173	ENSOANG00000008836	APEX1	68	69.455	Ornithorhynchus_anatinus
ENSGACG00000019497	apex1	99	69.925	ENSOCUG00000005022	APEX1	99	65.823	Oryctolagus_cuniculus
ENSGACG00000019497	apex1	99	90.226	ENSORLG00000012378	apex1	100	89.389	Oryzias_latipes
ENSGACG00000019497	apex1	99	90.226	ENSORLG00020021371	apex1	100	89.389	Oryzias_latipes_hni
ENSGACG00000019497	apex1	99	90.226	ENSORLG00015020089	apex1	100	89.389	Oryzias_latipes_hsok
ENSGACG00000019497	apex1	99	90.977	ENSOMEG00000018876	apex1	100	90.675	Oryzias_melastigma
ENSGACG00000019497	apex1	99	60.902	ENSOGAG00000029355	-	89	61.649	Otolemur_garnettii
ENSGACG00000019497	apex1	99	69.549	ENSOGAG00000013335	-	99	65.506	Otolemur_garnettii
ENSGACG00000019497	apex1	96	66.016	ENSOARG00000001876	-	99	62.418	Ovis_aries
ENSGACG00000019497	apex1	99	68.797	ENSOARG00000019740	-	99	65.190	Ovis_aries
ENSGACG00000019497	apex1	99	57.143	ENSOARG00000014424	-	89	56.989	Ovis_aries
ENSGACG00000019497	apex1	99	69.173	ENSPPAG00000038760	APEX1	99	65.916	Pan_paniscus
ENSGACG00000019497	apex1	99	69.925	ENSPPRG00000011794	APEX1	99	65.506	Panthera_pardus
ENSGACG00000019497	apex1	99	69.925	ENSPTIG00000014829	APEX1	99	65.506	Panthera_tigris_altaica
ENSGACG00000019497	apex1	99	69.173	ENSPTRG00000006093	APEX1	99	65.916	Pan_troglodytes
ENSGACG00000019497	apex1	99	68.797	ENSPANG00000022757	APEX1	99	64.557	Papio_anubis
ENSGACG00000019497	apex1	99	84.962	ENSPKIG00000003504	apex1	99	83.013	Paramormyrops_kingsleyae
ENSGACG00000019497	apex1	97	77.186	ENSPMGG00000016596	apex1	78	77.186	Periophthalmus_magnuspinnatus
ENSGACG00000019497	apex1	99	69.173	ENSPEMG00000019097	Apex1	99	65.615	Peromyscus_maniculatus_bairdii
ENSGACG00000019497	apex1	99	72.285	ENSPMAG00000007275	-	95	72.043	Petromyzon_marinus
ENSGACG00000019497	apex1	99	68.421	ENSPCIG00000023274	APEX1	87	67.742	Phascolarctos_cinereus
ENSGACG00000019497	apex1	99	92.105	ENSPFOG00000004178	apex1	100	90.000	Poecilia_formosa
ENSGACG00000019497	apex1	99	91.729	ENSPLAG00000012779	apex1	100	89.677	Poecilia_latipinna
ENSGACG00000019497	apex1	99	92.105	ENSPMEG00000019623	apex1	100	90.000	Poecilia_mexicana
ENSGACG00000019497	apex1	99	91.353	ENSPREG00000014298	apex1	100	88.103	Poecilia_reticulata
ENSGACG00000019497	apex1	99	68.797	ENSPPYG00000005565	APEX1	99	64.557	Pongo_abelii
ENSGACG00000019497	apex1	99	67.669	ENSPCAG00000010376	APEX1	99	63.608	Procavia_capensis
ENSGACG00000019497	apex1	99	68.797	ENSPCOG00000021564	APEX1	99	64.557	Propithecus_coquereli
ENSGACG00000019497	apex1	99	69.173	ENSPVAG00000010736	APEX1	87	69.176	Pteropus_vampyrus
ENSGACG00000019497	apex1	99	91.353	ENSPNYG00000023940	apex1	100	89.677	Pundamilia_nyererei
ENSGACG00000019497	apex1	100	80.669	ENSPNAG00000020897	apex1	96	83.509	Pygocentrus_nattereri
ENSGACG00000019497	apex1	99	69.173	ENSRNOG00000009663	Apex1	99	65.615	Rattus_norvegicus
ENSGACG00000019497	apex1	99	69.173	ENSRBIG00000038325	APEX1	98	64.873	Rhinopithecus_bieti
ENSGACG00000019497	apex1	99	69.925	ENSSBOG00000018921	-	99	65.823	Saimiri_boliviensis_boliviensis
ENSGACG00000019497	apex1	99	61.654	ENSSBOG00000031372	-	91	61.290	Saimiri_boliviensis_boliviensis
ENSGACG00000019497	apex1	99	67.778	ENSSHAG00000013524	APEX1	97	62.540	Sarcophilus_harrisii
ENSGACG00000019497	apex1	99	84.211	ENSSFOG00015001948	apex1	99	81.290	Scleropages_formosus
ENSGACG00000019497	apex1	99	92.481	ENSSMAG00000013348	apex1	100	90.476	Scophthalmus_maximus
ENSGACG00000019497	apex1	100	90.997	ENSSDUG00000016377	apex1	100	90.997	Seriola_dumerili
ENSGACG00000019497	apex1	99	91.353	ENSSLDG00000023005	apex1	100	90.645	Seriola_lalandi_dorsalis
ENSGACG00000019497	apex1	99	72.830	ENSSPUG00000000531	APEX1	94	73.118	Sphenodon_punctatus
ENSGACG00000019497	apex1	99	90.602	ENSSPAG00000000458	apex1	100	89.355	Stegastes_partitus
ENSGACG00000019497	apex1	91	43.028	ENSSSCG00000039705	-	89	40.433	Sus_scrofa
ENSGACG00000019497	apex1	99	69.549	ENSSSCG00000040060	-	99	65.300	Sus_scrofa
ENSGACG00000019497	apex1	88	56.170	ENSTGUG00000014378	APEX1	100	56.170	Taeniopygia_guttata
ENSGACG00000019497	apex1	99	87.594	ENSTRUG00000004268	apex1	95	84.395	Takifugu_rubripes
ENSGACG00000019497	apex1	99	88.346	ENSTNIG00000005778	apex1	100	86.129	Tetraodon_nigroviridis
ENSGACG00000019497	apex1	99	65.789	ENSTBEG00000006405	APEX1	99	62.342	Tupaia_belangeri
ENSGACG00000019497	apex1	88	68.511	ENSTTRG00000007860	APEX1	100	68.511	Tursiops_truncatus
ENSGACG00000019497	apex1	99	68.797	ENSUAMG00000010457	APEX1	99	64.557	Ursus_americanus
ENSGACG00000019497	apex1	99	68.797	ENSUMAG00000009178	APEX1	99	64.557	Ursus_maritimus
ENSGACG00000019497	apex1	88	63.830	ENSVPAG00000005083	APEX1	100	63.830	Vicugna_pacos
ENSGACG00000019497	apex1	99	69.173	ENSVVUG00000009010	APEX1	99	65.931	Vulpes_vulpes
ENSGACG00000019497	apex1	99	72.932	ENSXETG00000024773	apex1	99	69.108	Xenopus_tropicalis
ENSGACG00000019497	apex1	99	92.105	ENSXCOG00000015233	apex1	100	89.389	Xiphophorus_couchianus
ENSGACG00000019497	apex1	99	92.105	ENSXMAG00000006195	apex1	100	89.677	Xiphophorus_maculatus