EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000019685 (Gene tree)
Gene ID: -
Gene Symbol: cpsf6
Alias: wu:fa22f12|zgc:85819
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 6413 bases
Position: chrgroupIV:28753155-28759567
Accession: ZDB-GENE-030131-5277
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000026020	RRM_1	PF00076.22	3.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000026071	-	1694	-	ENSGACP00000026020	548 (aa)	-	G3Q806

Gene Model

Click here to download ENSGACG00000019685's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000019685's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000019685	cpsf6	66	73.750	ENSG00000149532	CPSF7	87	62.308	Homo_sapiens
ENSGACG00000019685	cpsf6	52	78.947	ENSAMEG00000011781	CPSF6	77	82.915	Ailuropoda_melanoleuca
ENSGACG00000019685	cpsf6	58	39.490	ENSAOCG00000012357	CPSF7	63	52.500	Amphiprion_ocellaris
ENSGACG00000019685	cpsf6	58	39.490	ENSAPEG00000015375	CPSF7	63	52.500	Amphiprion_percula
ENSGACG00000019685	cpsf6	76	68.485	ENSANAG00000019240	CPSF6	75	81.215	Aotus_nancymaae
ENSGACG00000019685	cpsf6	64	47.475	ENSANAG00000024635	CPSF7	68	51.553	Aotus_nancymaae
ENSGACG00000019685	cpsf6	62	90.419	ENSAMXG00000016745	CPSF6	82	86.932	Astyanax_mexicanus
ENSGACG00000019685	cpsf6	65	52.604	ENSBTAG00000015263	CPSF7	70	56.604	Bos_taurus
ENSGACG00000019685	cpsf6	68	52.083	ENSCJAG00000019282	CPSF7	73	66.667	Callithrix_jacchus
ENSGACG00000019685	cpsf6	94	57.834	ENSCJAG00000001798	CPSF6	77	82.412	Callithrix_jacchus
ENSGACG00000019685	cpsf6	61	80.892	ENSCAFG00000000424	CPSF6	95	77.647	Canis_familiaris
ENSGACG00000019685	cpsf6	65	52.604	ENSCAFG00000016152	CPSF7	70	57.233	Canis_familiaris
ENSGACG00000019685	cpsf6	65	52.604	ENSCAFG00020012753	CPSF7	70	57.233	Canis_lupus_dingo
ENSGACG00000019685	cpsf6	65	52.604	ENSCHIG00000014655	CPSF7	70	56.604	Capra_hircus
ENSGACG00000019685	cpsf6	65	52.604	ENSTSYG00000010138	-	70	57.233	Carlito_syrichta
ENSGACG00000019685	cpsf6	65	87.640	ENSTSYG00000008591	CPSF6	76	81.111	Carlito_syrichta
ENSGACG00000019685	cpsf6	55	58.451	ENSCAPG00000006384	CPSF7	68	57.233	Cavia_aperea
ENSGACG00000019685	cpsf6	57	58.451	ENSCPOG00000009980	CPSF7	70	57.233	Cavia_porcellus
ENSGACG00000019685	cpsf6	65	52.083	ENSCCAG00000032367	CPSF7	70	56.604	Cebus_capucinus
ENSGACG00000019685	cpsf6	94	57.143	ENSCCAG00000028149	CPSF6	77	82.412	Cebus_capucinus
ENSGACG00000019685	cpsf6	68	52.083	ENSCATG00000042801	CPSF7	76	56.604	Cercocebus_atys
ENSGACG00000019685	cpsf6	94	56.069	ENSCATG00000039288	CPSF6	77	82.412	Cercocebus_atys
ENSGACG00000019685	cpsf6	57	58.451	ENSCLAG00000003174	CPSF7	70	56.604	Chinchilla_lanigera
ENSGACG00000019685	cpsf6	68	52.083	ENSCSAG00000006414	CPSF7	76	56.604	Chlorocebus_sabaeus
ENSGACG00000019685	cpsf6	52	78.873	ENSCGRG00001018082	Cpsf6	77	82.412	Cricetulus_griseus_chok1gshd
ENSGACG00000019685	cpsf6	65	53.125	ENSCGRG00001020382	Cpsf7	70	57.862	Cricetulus_griseus_chok1gshd
ENSGACG00000019685	cpsf6	68	53.125	ENSCGRG00000017954	Cpsf7	76	57.862	Cricetulus_griseus_crigri
ENSGACG00000019685	cpsf6	94	88.247	ENSCVAG00000014857	cpsf6	94	83.815	Cyprinodon_variegatus
ENSGACG00000019685	cpsf6	65	52.604	ENSDNOG00000018517	CPSF7	73	67.500	Dasypus_novemcinctus
ENSGACG00000019685	cpsf6	65	49.479	ENSETEG00000003765	CPSF7	62	67.500	Echinops_telfairi
ENSGACG00000019685	cpsf6	69	81.567	ENSETEG00000002097	CPSF6	77	82.412	Echinops_telfairi
ENSGACG00000019685	cpsf6	65	52.604	ENSEASG00005008196	CPSF7	70	57.233	Equus_asinus_asinus
ENSGACG00000019685	cpsf6	66	75.000	ENSECAG00000018521	CPSF7	80	67.500	Equus_caballus
ENSGACG00000019685	cpsf6	74	59.843	ENSFCAG00000013677	CPSF7	80	67.500	Felis_catus
ENSGACG00000019685	cpsf6	71	47.283	ENSFALG00000011927	CPSF7	72	57.047	Ficedula_albicollis
ENSGACG00000019685	cpsf6	65	53.125	ENSFDAG00000003919	CPSF7	70	58.065	Fukomys_damarensis
ENSGACG00000019685	cpsf6	53	97.500	ENSGMOG00000012951	cpsf6	53	98.333	Gadus_morhua
ENSGACG00000019685	cpsf6	63	51.685	ENSGALG00000040962	CPSF7	60	60.959	Gallus_gallus
ENSGACG00000019685	cpsf6	52	78.521	ENSGAGG00000010228	CPSF6	54	72.281	Gopherus_agassizii
ENSGACG00000019685	cpsf6	94	56.069	ENSGGOG00000008211	CPSF6	77	82.412	Gorilla_gorilla
ENSGACG00000019685	cpsf6	68	53.125	ENSHGLG00000019090	-	76	57.233	Heterocephalus_glaber_female
ENSGACG00000019685	cpsf6	68	53.125	ENSHGLG00100013933	-	77	57.233	Heterocephalus_glaber_male
ENSGACG00000019685	cpsf6	65	52.604	ENSSTOG00000007708	CPSF7	70	57.233	Ictidomys_tridecemlineatus
ENSGACG00000019685	cpsf6	68	52.604	ENSJJAG00000019390	Cpsf7	76	57.233	Jaculus_jaculus
ENSGACG00000019685	cpsf6	52	92.281	ENSKMAG00000014794	cpsf6	94	87.645	Kryptolebias_marmoratus
ENSGACG00000019685	cpsf6	57	38.462	ENSLBEG00000000947	CPSF7	59	47.788	Labrus_bergylta
ENSGACG00000019685	cpsf6	93	33.143	ENSLACG00000005542	CPSF7	69	46.203	Latimeria_chalumnae
ENSGACG00000019685	cpsf6	67	88.945	ENSLOCG00000016190	cpsf6	68	88.945	Lepisosteus_oculatus
ENSGACG00000019685	cpsf6	65	52.604	ENSLAFG00000032084	CPSF7	70	57.233	Loxodonta_africana
ENSGACG00000019685	cpsf6	94	56.069	ENSMFAG00000045318	CPSF6	77	82.412	Macaca_fascicularis
ENSGACG00000019685	cpsf6	65	52.083	ENSMFAG00000001401	CPSF7	70	56.604	Macaca_fascicularis
ENSGACG00000019685	cpsf6	52	78.873	ENSMMUG00000002921	CPSF6	77	82.412	Macaca_mulatta
ENSGACG00000019685	cpsf6	68	52.083	ENSMMUG00000015280	CPSF7	76	56.604	Macaca_mulatta
ENSGACG00000019685	cpsf6	94	56.757	ENSMNEG00000036311	CPSF6	77	82.412	Macaca_nemestrina
ENSGACG00000019685	cpsf6	68	52.083	ENSMNEG00000029585	CPSF7	76	56.604	Macaca_nemestrina
ENSGACG00000019685	cpsf6	65	52.083	ENSMLEG00000031269	CPSF7	69	57.419	Mandrillus_leucophaeus
ENSGACG00000019685	cpsf6	94	94.595	ENSMAMG00000010385	cpsf6	94	94.208	Mastacembelus_armatus
ENSGACG00000019685	cpsf6	95	43.369	ENSMGAG00000004876	CPSF7	59	62.238	Meleagris_gallopavo
ENSGACG00000019685	cpsf6	65	52.604	ENSMAUG00000013020	Cpsf7	70	57.233	Mesocricetus_auratus
ENSGACG00000019685	cpsf6	65	52.604	ENSMICG00000013788	CPSF7	70	57.233	Microcebus_murinus
ENSGACG00000019685	cpsf6	94	56.757	ENSMICG00000007385	-	77	82.412	Microcebus_murinus
ENSGACG00000019685	cpsf6	65	52.604	ENSMOCG00000000072	Cpsf7	70	57.233	Microtus_ochrogaster
ENSGACG00000019685	cpsf6	52	78.873	ENSMOCG00000013982	Cpsf6	77	82.412	Microtus_ochrogaster
ENSGACG00000019685	cpsf6	65	51.020	ENSMODG00000020364	CPSF7	63	64.394	Monodelphis_domestica
ENSGACG00000019685	cpsf6	75	96.373	ENSMALG00000014908	cpsf6	78	95.337	Monopterus_albus
ENSGACG00000019685	cpsf6	65	52.604	MGP_CAROLIEiJ_G0022690	Cpsf7	70	57.233	Mus_caroli
ENSGACG00000019685	cpsf6	52	78.873	MGP_CAROLIEiJ_G0015834	Cpsf6	77	82.412	Mus_caroli
ENSGACG00000019685	cpsf6	65	52.604	ENSMUSG00000034820	Cpsf7	70	57.233	Mus_musculus
ENSGACG00000019685	cpsf6	52	78.873	ENSMUSG00000055531	Cpsf6	77	82.412	Mus_musculus
ENSGACG00000019685	cpsf6	65	52.604	MGP_PahariEiJ_G0014184	Cpsf7	70	57.233	Mus_pahari
ENSGACG00000019685	cpsf6	85	78.521	MGP_PahariEiJ_G0031253	Cpsf6	76	82.323	Mus_pahari
ENSGACG00000019685	cpsf6	65	52.604	MGP_SPRETEiJ_G0023604	Cpsf7	70	57.233	Mus_spretus
ENSGACG00000019685	cpsf6	52	78.873	MGP_SPRETEiJ_G0016657	Cpsf6	77	82.412	Mus_spretus
ENSGACG00000019685	cpsf6	64	51.562	ENSMPUG00000014163	CPSF7	66	56.774	Mustela_putorius_furo
ENSGACG00000019685	cpsf6	68	52.604	ENSMLUG00000013278	CPSF7	76	57.233	Myotis_lucifugus
ENSGACG00000019685	cpsf6	68	89.130	ENSMLUG00000028728	-	83	86.111	Myotis_lucifugus
ENSGACG00000019685	cpsf6	52	78.873	ENSNGAG00000015901	Cpsf6	77	82.412	Nannospalax_galili
ENSGACG00000019685	cpsf6	65	52.604	ENSNGAG00000005031	Cpsf7	70	57.233	Nannospalax_galili
ENSGACG00000019685	cpsf6	65	52.083	ENSNLEG00000002529	CPSF7	64	57.419	Nomascus_leucogenys
ENSGACG00000019685	cpsf6	65	81.567	ENSMEUG00000015041	CPSF6	77	82.412	Notamacropus_eugenii
ENSGACG00000019685	cpsf6	65	53.646	ENSMEUG00000002261	CPSF7	70	58.491	Notamacropus_eugenii
ENSGACG00000019685	cpsf6	65	50.256	ENSODEG00000002610	CPSF7	70	56.790	Octodon_degus
ENSGACG00000019685	cpsf6	95	41.697	ENSOCUG00000024726	CPSF7	70	56.604	Oryctolagus_cuniculus
ENSGACG00000019685	cpsf6	68	35.088	ENSORLG00000006495	CPSF7	59	48.276	Oryzias_latipes
ENSGACG00000019685	cpsf6	79	33.779	ENSORLG00020012657	CPSF7	59	48.276	Oryzias_latipes_hni
ENSGACG00000019685	cpsf6	79	33.779	ENSORLG00015011091	CPSF7	58	44.915	Oryzias_latipes_hsok
ENSGACG00000019685	cpsf6	70	34.649	ENSOMEG00000000539	CPSF7	61	47.458	Oryzias_melastigma
ENSGACG00000019685	cpsf6	65	52.604	ENSOGAG00000027958	CPSF7	65	58.065	Otolemur_garnettii
ENSGACG00000019685	cpsf6	95	35.445	ENSOARG00000012937	CPSF7	63	57.419	Ovis_aries
ENSGACG00000019685	cpsf6	65	52.083	ENSPPAG00000028232	CPSF7	68	56.604	Pan_paniscus
ENSGACG00000019685	cpsf6	65	52.604	ENSPPRG00000008538	CPSF7	70	57.233	Panthera_pardus
ENSGACG00000019685	cpsf6	65	52.604	ENSPTIG00000021699	CPSF7	70	57.233	Panthera_tigris_altaica
ENSGACG00000019685	cpsf6	65	52.083	ENSPTRG00000003742	CPSF7	70	56.604	Pan_troglodytes
ENSGACG00000019685	cpsf6	94	56.069	ENSPTRG00000005205	CPSF6	77	82.412	Pan_troglodytes
ENSGACG00000019685	cpsf6	65	52.083	ENSPANG00000006037	CPSF7	69	57.419	Papio_anubis
ENSGACG00000019685	cpsf6	74	91.803	ENSPANG00000011641	CPSF6	77	82.412	Papio_anubis
ENSGACG00000019685	cpsf6	61	45.763	ENSPKIG00000018054	CPSF7	65	54.386	Paramormyrops_kingsleyae
ENSGACG00000019685	cpsf6	52	89.474	ENSPKIG00000022613	CPSF6	94	87.476	Paramormyrops_kingsleyae
ENSGACG00000019685	cpsf6	68	52.604	ENSPEMG00000012648	Cpsf7	76	57.233	Peromyscus_maniculatus_bairdii
ENSGACG00000019685	cpsf6	50	44.027	ENSPMAG00000008077	-	68	49.738	Petromyzon_marinus
ENSGACG00000019685	cpsf6	65	51.020	ENSPCIG00000002551	CPSF7	73	64.394	Phascolarctos_cinereus
ENSGACG00000019685	cpsf6	65	52.083	ENSPPYG00000003188	CPSF7	70	56.604	Pongo_abelii
ENSGACG00000019685	cpsf6	65	52.604	ENSPCOG00000011976	CPSF7	70	57.233	Propithecus_coquereli
ENSGACG00000019685	cpsf6	52	78.873	ENSPCOG00000024384	CPSF6	77	82.412	Propithecus_coquereli
ENSGACG00000019685	cpsf6	65	52.604	ENSPVAG00000010675	CPSF7	70	58.065	Pteropus_vampyrus
ENSGACG00000019685	cpsf6	55	45.752	ENSPNAG00000015073	CPSF7	60	55.455	Pygocentrus_nattereri
ENSGACG00000019685	cpsf6	68	52.604	ENSRNOG00000020668	Cpsf7	76	57.233	Rattus_norvegicus
ENSGACG00000019685	cpsf6	74	59.055	ENSRBIG00000031429	CPSF7	80	66.667	Rhinopithecus_bieti
ENSGACG00000019685	cpsf6	94	60.116	ENSRBIG00000042827	CPSF6	77	82.412	Rhinopithecus_bieti
ENSGACG00000019685	cpsf6	65	52.083	ENSRROG00000045009	CPSF7	70	56.604	Rhinopithecus_roxellana
ENSGACG00000019685	cpsf6	94	60.811	ENSRROG00000042758	CPSF6	77	82.412	Rhinopithecus_roxellana
ENSGACG00000019685	cpsf6	65	52.083	ENSSBOG00000018431	CPSF7	70	56.604	Saimiri_boliviensis_boliviensis
ENSGACG00000019685	cpsf6	62	53.646	ENSSHAG00000011964	CPSF7	67	58.491	Sarcophilus_harrisii
ENSGACG00000019685	cpsf6	52	89.437	ENSSFOG00015001688	CPSF6	82	86.898	Scleropages_formosus
ENSGACG00000019685	cpsf6	100	95.993	ENSSDUG00000005024	cpsf6	100	95.993	Seriola_dumerili
ENSGACG00000019685	cpsf6	100	95.993	ENSSLDG00000009042	cpsf6	100	95.993	Seriola_lalandi_dorsalis
ENSGACG00000019685	cpsf6	72	89.831	ENSSARG00000006743	CPSF6	77	81.028	Sorex_araneus
ENSGACG00000019685	cpsf6	65	52.604	ENSSSCG00000013083	CPSF7	73	67.500	Sus_scrofa
ENSGACG00000019685	cpsf6	63	48.588	ENSTGUG00000006513	CPSF7	68	55.405	Taeniopygia_guttata
ENSGACG00000019685	cpsf6	94	89.961	ENSTRUG00000016461	cpsf6	94	88.224	Takifugu_rubripes
ENSGACG00000019685	cpsf6	94	89.961	ENSTNIG00000007576	cpsf6	94	89.575	Tetraodon_nigroviridis
ENSGACG00000019685	cpsf6	62	52.083	ENSTTRG00000011085	CPSF7	68	57.233	Tursiops_truncatus
ENSGACG00000019685	cpsf6	65	52.604	ENSUAMG00000017809	CPSF7	70	57.233	Ursus_americanus
ENSGACG00000019685	cpsf6	68	52.604	ENSUMAG00000011825	CPSF7	76	57.233	Ursus_maritimus
ENSGACG00000019685	cpsf6	65	52.604	ENSVVUG00000004939	CPSF7	73	67.500	Vulpes_vulpes
ENSGACG00000019685	cpsf6	97	41.894	ENSXETG00000006715	cpsf7	54	48.588	Xenopus_tropicalis