EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000019793 (Gene tree)
Gene ID: -
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 113750 bases
Position: chrgroupIV:30118637-30232386
Accession: ZDB-GENE-030131-3124
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000026157	TUDOR	PF00567.24	1.3e-26	1	1
ENSGACP00000026157	SNase	PF00565.17	1.8e-27	1	2
ENSGACP00000026157	SNase	PF00565.17	1.8e-27	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000026208	-	2761	-	ENSGACP00000026157	899 (aa)	-	G3Q8E3

Gene Model

Click here to download ENSGACG00000019793's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000019793's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000019793	snd1	98	54.093	ENSG00000197157	SND1	100	53.637	Homo_sapiens
ENSGACG00000019793	snd1	100	62.473	ENSAPOG00000017599	snd1	100	62.473	Acanthochromis_polyacanthus
ENSGACG00000019793	snd1	100	53.629	ENSAMEG00000004664	SND1	94	53.629	Ailuropoda_melanoleuca
ENSGACG00000019793	snd1	100	62.050	ENSACIG00000003551	snd1	100	62.050	Amphilophus_citrinellus
ENSGACG00000019793	snd1	100	62.690	ENSAOCG00000014166	snd1	100	62.581	Amphiprion_ocellaris
ENSGACG00000019793	snd1	100	62.690	ENSAPEG00000007067	snd1	100	62.690	Amphiprion_percula
ENSGACG00000019793	snd1	98	59.735	ENSATEG00000018475	snd1	89	59.735	Anabas_testudineus
ENSGACG00000019793	snd1	98	54.314	ENSANAG00000034463	SND1	100	53.855	Aotus_nancymaae
ENSGACG00000019793	snd1	100	60.412	ENSACLG00000022897	snd1	100	60.412	Astatotilapia_calliptera
ENSGACG00000019793	snd1	99	57.918	ENSAMXG00000016318	snd1	99	57.872	Astyanax_mexicanus
ENSGACG00000019793	snd1	98	54.535	ENSBTAG00000010692	SND1	100	54.072	Bos_taurus
ENSGACG00000019793	snd1	99	31.562	WBGene00006626	tsn-1	99	31.562	Caenorhabditis_elegans
ENSGACG00000019793	snd1	98	54.314	ENSCJAG00000017668	SND1	100	53.855	Callithrix_jacchus
ENSGACG00000019793	snd1	100	53.855	ENSCAFG00000001700	SND1	100	53.855	Canis_familiaris
ENSGACG00000019793	snd1	100	53.855	ENSCAFG00020021639	SND1	100	53.855	Canis_lupus_dingo
ENSGACG00000019793	snd1	98	54.535	ENSCHIG00000023390	SND1	100	54.072	Capra_hircus
ENSGACG00000019793	snd1	70	41.278	ENSTSYG00000004979	SND1	96	41.278	Carlito_syrichta
ENSGACG00000019793	snd1	97	47.305	ENSCAPG00000010677	SND1	97	48.322	Cavia_aperea
ENSGACG00000019793	snd1	98	54.314	ENSCPOG00000006251	SND1	100	53.855	Cavia_porcellus
ENSGACG00000019793	snd1	98	54.204	ENSCCAG00000036847	SND1	100	53.746	Cebus_capucinus
ENSGACG00000019793	snd1	98	54.314	ENSCATG00000035214	SND1	100	53.855	Cercocebus_atys
ENSGACG00000019793	snd1	98	54.596	ENSCLAG00000011796	SND1	100	54.072	Chinchilla_lanigera
ENSGACG00000019793	snd1	98	54.314	ENSCSAG00000010182	SND1	100	53.855	Chlorocebus_sabaeus
ENSGACG00000019793	snd1	67	75.000	ENSCHOG00000002218	SND1	71	75.000	Choloepus_hoffmanni
ENSGACG00000019793	snd1	100	54.674	ENSCPBG00000018094	SND1	100	54.674	Chrysemys_picta_bellii
ENSGACG00000019793	snd1	98	35.892	ENSCING00000000524	-	99	35.193	Ciona_intestinalis
ENSGACG00000019793	snd1	99	37.005	ENSCSAVG00000008807	-	99	36.638	Ciona_savignyi
ENSGACG00000019793	snd1	98	54.314	ENSCANG00000035119	SND1	100	53.855	Colobus_angolensis_palliatus
ENSGACG00000019793	snd1	98	54.365	ENSCGRG00001022514	Snd1	100	53.905	Cricetulus_griseus_chok1gshd
ENSGACG00000019793	snd1	97	54.129	ENSCGRG00000012277	Snd1	99	54.129	Cricetulus_griseus_crigri
ENSGACG00000019793	snd1	100	60.695	ENSCSEG00000008661	snd1	100	60.695	Cynoglossus_semilaevis
ENSGACG00000019793	snd1	100	61.605	ENSCVAG00000010316	snd1	100	61.605	Cyprinodon_variegatus
ENSGACG00000019793	snd1	100	57.096	ENSDARG00000006766	snd1	100	57.096	Danio_rerio
ENSGACG00000019793	snd1	97	53.222	ENSDNOG00000006795	SND1	100	53.222	Dasypus_novemcinctus
ENSGACG00000019793	snd1	98	54.204	ENSDORG00000000336	Snd1	100	53.746	Dipodomys_ordii
ENSGACG00000019793	snd1	98	34.439	FBgn0035121	Tudor-SN	99	34.322	Drosophila_melanogaster
ENSGACG00000019793	snd1	65	88.889	ENSETEG00000000375	SND1	65	88.889	Echinops_telfairi
ENSGACG00000019793	snd1	98	53.478	ENSEASG00005008513	SND1	100	53.042	Equus_asinus_asinus
ENSGACG00000019793	snd1	98	54.204	ENSECAG00000011451	SND1	100	53.746	Equus_caballus
ENSGACG00000019793	snd1	100	45.277	ENSEEUG00000014737	SND1	100	45.277	Erinaceus_europaeus
ENSGACG00000019793	snd1	99	58.198	ENSELUG00000001805	snd1	96	58.198	Esox_lucius
ENSGACG00000019793	snd1	100	53.963	ENSFCAG00000008289	SND1	100	53.963	Felis_catus
ENSGACG00000019793	snd1	98	54.314	ENSFDAG00000015881	SND1	100	53.855	Fukomys_damarensis
ENSGACG00000019793	snd1	100	59.766	ENSFHEG00000004093	snd1	100	59.915	Fundulus_heteroclitus
ENSGACG00000019793	snd1	55	89.510	ENSGMOG00000018932	snd1	56	89.510	Gadus_morhua
ENSGACG00000019793	snd1	100	61.171	ENSGAFG00000008421	snd1	100	61.171	Gambusia_affinis
ENSGACG00000019793	snd1	98	54.314	ENSGGOG00000009614	SND1	100	53.855	Gorilla_gorilla
ENSGACG00000019793	snd1	100	60.304	ENSHBUG00000019135	snd1	100	60.304	Haplochromis_burtoni
ENSGACG00000019793	snd1	98	54.314	ENSHGLG00000003618	SND1	100	53.855	Heterocephalus_glaber_female
ENSGACG00000019793	snd1	99	54.039	ENSHGLG00100012449	SND1	100	54.039	Heterocephalus_glaber_male
ENSGACG00000019793	snd1	100	60.369	ENSHCOG00000005266	snd1	100	60.369	Hippocampus_comes
ENSGACG00000019793	snd1	99	56.786	ENSIPUG00000013279	snd1	99	56.833	Ictalurus_punctatus
ENSGACG00000019793	snd1	98	54.314	ENSSTOG00000002140	SND1	100	53.855	Ictidomys_tridecemlineatus
ENSGACG00000019793	snd1	98	54.757	ENSJJAG00000009561	Snd1	100	54.289	Jaculus_jaculus
ENSGACG00000019793	snd1	100	61.280	ENSKMAG00000016997	snd1	100	61.280	Kryptolebias_marmoratus
ENSGACG00000019793	snd1	100	83.871	ENSLBEG00000013563	snd1	100	61.346	Labrus_bergylta
ENSGACG00000019793	snd1	99	57.470	ENSLOCG00000015537	snd1	99	57.158	Lepisosteus_oculatus
ENSGACG00000019793	snd1	100	54.072	ENSLAFG00000009696	SND1	100	54.072	Loxodonta_africana
ENSGACG00000019793	snd1	98	54.314	ENSMFAG00000038114	SND1	100	53.855	Macaca_fascicularis
ENSGACG00000019793	snd1	98	54.314	ENSMMUG00000015432	SND1	100	53.855	Macaca_mulatta
ENSGACG00000019793	snd1	98	54.314	ENSMNEG00000039808	SND1	100	54.129	Macaca_nemestrina
ENSGACG00000019793	snd1	98	54.204	ENSMLEG00000029040	SND1	100	54.018	Mandrillus_leucophaeus
ENSGACG00000019793	snd1	100	60.478	ENSMAMG00000011739	snd1	100	60.478	Mastacembelus_armatus
ENSGACG00000019793	snd1	100	60.412	ENSMZEG00005005681	snd1	100	60.412	Maylandia_zebra
ENSGACG00000019793	snd1	98	54.204	ENSMICG00000000097	SND1	100	53.746	Microcebus_murinus
ENSGACG00000019793	snd1	98	54.425	ENSMOCG00000005040	Snd1	100	53.963	Microtus_ochrogaster
ENSGACG00000019793	snd1	100	61.346	ENSMMOG00000001795	snd1	100	61.346	Mola_mola
ENSGACG00000019793	snd1	98	54.425	ENSMODG00000015182	SND1	100	53.963	Monodelphis_domestica
ENSGACG00000019793	snd1	100	60.586	ENSMALG00000012071	snd1	100	60.656	Monopterus_albus
ENSGACG00000019793	snd1	98	54.204	MGP_CAROLIEiJ_G0028159	Snd1	100	53.855	Mus_caroli
ENSGACG00000019793	snd1	98	53.982	ENSMUSG00000001424	Snd1	100	53.637	Mus_musculus
ENSGACG00000019793	snd1	98	54.204	MGP_PahariEiJ_G0021917	Snd1	100	53.855	Mus_pahari
ENSGACG00000019793	snd1	98	54.204	MGP_SPRETEiJ_G0029159	Snd1	100	68.536	Mus_spretus
ENSGACG00000019793	snd1	100	53.780	ENSMPUG00000006545	SND1	100	53.780	Mustela_putorius_furo
ENSGACG00000019793	snd1	97	53.363	ENSMLUG00000017130	SND1	99	53.363	Myotis_lucifugus
ENSGACG00000019793	snd1	98	54.245	ENSNGAG00000011186	Snd1	100	53.855	Nannospalax_galili
ENSGACG00000019793	snd1	100	60.412	ENSNBRG00000006681	snd1	100	60.412	Neolamprologus_brichardi
ENSGACG00000019793	snd1	100	53.855	ENSNLEG00000012263	SND1	100	54.129	Nomascus_leucogenys
ENSGACG00000019793	snd1	83	88.889	ENSOPRG00000013405	SND1	83	88.889	Ochotona_princeps
ENSGACG00000019793	snd1	98	54.264	ENSODEG00000011502	SND1	100	54.072	Octodon_degus
ENSGACG00000019793	snd1	100	60.087	ENSONIG00000011481	snd1	97	60.087	Oreochromis_niloticus
ENSGACG00000019793	snd1	98	53.880	ENSOANG00000000817	SND1	99	53.362	Ornithorhynchus_anatinus
ENSGACG00000019793	snd1	100	53.312	ENSOCUG00000001620	SND1	100	53.312	Oryctolagus_cuniculus
ENSGACG00000019793	snd1	100	60.304	ENSORLG00000015201	snd1	100	60.304	Oryzias_latipes
ENSGACG00000019793	snd1	100	60.521	ENSORLG00020013991	snd1	100	60.521	Oryzias_latipes_hni
ENSGACG00000019793	snd1	100	60.521	ENSORLG00015012436	snd1	100	60.521	Oryzias_latipes_hsok
ENSGACG00000019793	snd1	100	61.063	ENSOMEG00000006406	snd1	100	61.063	Oryzias_melastigma
ENSGACG00000019793	snd1	98	53.312	ENSOGAG00000013356	SND1	94	53.954	Otolemur_garnettii
ENSGACG00000019793	snd1	97	52.121	ENSOARG00000002149	SND1	100	52.121	Ovis_aries
ENSGACG00000019793	snd1	99	53.524	ENSPPAG00000042947	SND1	100	53.746	Pan_paniscus
ENSGACG00000019793	snd1	100	53.963	ENSPPRG00000004494	SND1	100	53.963	Panthera_pardus
ENSGACG00000019793	snd1	100	53.855	ENSPTIG00000014214	SND1	100	53.855	Panthera_tigris_altaica
ENSGACG00000019793	snd1	99	53.524	ENSPTRG00000023911	SND1	100	53.746	Pan_troglodytes
ENSGACG00000019793	snd1	97	54.078	ENSPANG00000011997	SND1	99	54.078	Papio_anubis
ENSGACG00000019793	snd1	99	55.834	ENSPKIG00000023494	snd1	99	55.771	Paramormyrops_kingsleyae
ENSGACG00000019793	snd1	92	57.210	ENSPMGG00000003629	snd1	100	57.210	Periophthalmus_magnuspinnatus
ENSGACG00000019793	snd1	98	54.204	ENSPEMG00000010240	Snd1	100	53.746	Peromyscus_maniculatus_bairdii
ENSGACG00000019793	snd1	97	45.902	ENSPMAG00000007915	-	99	46.667	Petromyzon_marinus
ENSGACG00000019793	snd1	98	54.757	ENSPCIG00000011561	SND1	100	54.289	Phascolarctos_cinereus
ENSGACG00000019793	snd1	100	61.280	ENSPFOG00000001557	snd1	100	61.280	Poecilia_formosa
ENSGACG00000019793	snd1	100	61.171	ENSPLAG00000018459	snd1	97	61.171	Poecilia_latipinna
ENSGACG00000019793	snd1	100	61.388	ENSPMEG00000006803	snd1	100	61.388	Poecilia_mexicana
ENSGACG00000019793	snd1	100	61.063	ENSPREG00000002189	snd1	100	61.063	Poecilia_reticulata
ENSGACG00000019793	snd1	91	88.889	ENSPPYG00000017972	SND1	100	88.889	Pongo_abelii
ENSGACG00000019793	snd1	92	78.470	ENSPCAG00000011305	SND1	91	78.470	Procavia_capensis
ENSGACG00000019793	snd1	98	54.314	ENSPCOG00000026791	SND1	100	54.129	Propithecus_coquereli
ENSGACG00000019793	snd1	98	52.678	ENSPVAG00000013945	SND1	100	53.203	Pteropus_vampyrus
ENSGACG00000019793	snd1	100	60.304	ENSPNYG00000000932	snd1	100	60.304	Pundamilia_nyererei
ENSGACG00000019793	snd1	99	57.980	ENSPNAG00000001206	snd1	99	57.980	Pygocentrus_nattereri
ENSGACG00000019793	snd1	98	54.204	ENSRNOG00000031173	Snd1	100	53.587	Rattus_norvegicus
ENSGACG00000019793	snd1	73	38.351	ENSRBIG00000027782	-	93	38.175	Rhinopithecus_bieti
ENSGACG00000019793	snd1	98	54.314	ENSRROG00000033020	SND1	100	53.855	Rhinopithecus_roxellana
ENSGACG00000019793	snd1	99	53.392	ENSSBOG00000032461	SND1	100	53.746	Saimiri_boliviensis_boliviensis
ENSGACG00000019793	snd1	98	52.778	ENSSHAG00000015359	SND1	100	52.778	Sarcophilus_harrisii
ENSGACG00000019793	snd1	98	56.565	ENSSFOG00015001103	snd1	99	56.559	Scleropages_formosus
ENSGACG00000019793	snd1	100	61.346	ENSSMAG00000001932	snd1	95	61.346	Scophthalmus_maximus
ENSGACG00000019793	snd1	100	61.564	ENSSDUG00000002699	snd1	94	61.564	Seriola_dumerili
ENSGACG00000019793	snd1	100	58.561	ENSSLDG00000001950	snd1	100	58.561	Seriola_lalandi_dorsalis
ENSGACG00000019793	snd1	78	73.585	ENSSARG00000004877	SND1	84	73.585	Sorex_araneus
ENSGACG00000019793	snd1	74	40.625	ENSSPUG00000017586	SND1	97	40.625	Sphenodon_punctatus
ENSGACG00000019793	snd1	72	45.705	ENSSPAG00000021398	snd1	99	45.649	Stegastes_partitus
ENSGACG00000019793	snd1	98	54.204	ENSSSCG00000016590	SND1	100	53.746	Sus_scrofa
ENSGACG00000019793	snd1	90	97.222	ENSTRUG00000014067	snd1	89	97.222	Takifugu_rubripes
ENSGACG00000019793	snd1	100	60.629	ENSTNIG00000011019	snd1	100	60.521	Tetraodon_nigroviridis
ENSGACG00000019793	snd1	85	76.025	ENSTBEG00000003999	SND1	90	76.025	Tupaia_belangeri
ENSGACG00000019793	snd1	98	50.221	ENSTTRG00000006059	SND1	100	49.837	Tursiops_truncatus
ENSGACG00000019793	snd1	57	40.470	ENSUAMG00000002820	-	87	40.470	Ursus_americanus
ENSGACG00000019793	snd1	76	58.240	ENSUAMG00000005604	-	95	58.240	Ursus_americanus
ENSGACG00000019793	snd1	100	53.529	ENSUMAG00000005960	SND1	100	53.529	Ursus_maritimus
ENSGACG00000019793	snd1	73	88.889	ENSVPAG00000008302	SND1	74	88.889	Vicugna_pacos
ENSGACG00000019793	snd1	100	53.855	ENSVVUG00000007226	SND1	100	53.855	Vulpes_vulpes
ENSGACG00000019793	snd1	97	49.723	ENSXETG00000023043	snd1	100	49.887	Xenopus_tropicalis
ENSGACG00000019793	snd1	92	55.803	ENSXCOG00000013629	snd1	99	55.803	Xiphophorus_couchianus
ENSGACG00000019793	snd1	100	61.388	ENSXMAG00000011469	snd1	100	61.388	Xiphophorus_maculatus