EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000020319 (Gene tree)
Gene ID: -
Gene Symbol: npm1a
Alias: npm1|sb:cb487
Full Name: nucleophosmin 1a
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 3824 bases
Position: chrgroupVII:16896044-16899867
Accession: ZDB-GENE-021028-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000026846	Nucleoplasmin	PF03066.15	2.9e-31	1	1
ENSGACP00000026847	Nucleoplasmin	PF03066.15	3.3e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000026898	-	918	-	ENSGACP00000026846	286 (aa)	-	G3QAD0
ENSGACT00000026899	-	975	-	ENSGACP00000026847	306 (aa)	-	G3QAD1

Gene Model

Click here to download ENSGACG00000020319's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000020319's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000020319	npm1a	95	39.437	ENSGACG00000016706	npm1b	97	40.210

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000020319	npm1a	99	67.224	ENSAPOG00000002813	npm1a	99	69.079	Acanthochromis_polyacanthus
ENSGACG00000020319	npm1a	93	62.857	ENSACIG00000014201	npm1a	99	66.071	Amphilophus_citrinellus
ENSGACG00000020319	npm1a	89	67.188	ENSAOCG00000004978	npm1a	100	67.969	Amphiprion_ocellaris
ENSGACG00000020319	npm1a	99	69.595	ENSAPEG00000008594	npm1a	99	70.608	Amphiprion_percula
ENSGACG00000020319	npm1a	99	68.954	ENSATEG00000008885	npm1a	99	70.588	Anabas_testudineus
ENSGACG00000020319	npm1a	97	62.676	ENSACLG00000008376	npm1a	96	63.732	Astatotilapia_calliptera
ENSGACG00000020319	npm1a	97	56.537	ENSAMXG00000010155	npm1a	97	59.011	Astyanax_mexicanus
ENSGACG00000020319	npm1a	99	64.664	ENSCSEG00000011165	npm1a	83	82.946	Cynoglossus_semilaevis
ENSGACG00000020319	npm1a	99	63.851	ENSCVAG00000008960	npm1a	99	64.120	Cyprinodon_variegatus
ENSGACG00000020319	npm1a	97	58.363	ENSDARG00000014329	npm1a	99	59.574	Danio_rerio
ENSGACG00000020319	npm1a	95	33.438	ENSEBUG00000012753	npm1a	74	34.701	Eptatretus_burgeri
ENSGACG00000020319	npm1a	99	61.986	ENSELUG00000013705	npm1a	99	64.041	Esox_lucius
ENSGACG00000020319	npm1a	99	62.416	ENSFHEG00000012496	npm1a	99	62.752	Fundulus_heteroclitus
ENSGACG00000020319	npm1a	99	61.538	ENSGAFG00000013059	npm1a	99	62.126	Gambusia_affinis
ENSGACG00000020319	npm1a	99	64.013	ENSHBUG00000000776	npm1a	99	66.242	Haplochromis_burtoni
ENSGACG00000020319	npm1a	99	51.163	ENSHCOG00000001059	npm1a	100	51.815	Hippocampus_comes
ENSGACG00000020319	npm1a	98	59.396	ENSIPUG00000019452	npm1	99	59.396	Ictalurus_punctatus
ENSGACG00000020319	npm1a	99	63.918	ENSKMAG00000010709	npm1a	99	63.574	Kryptolebias_marmoratus
ENSGACG00000020319	npm1a	99	63.973	ENSLBEG00000008793	npm1a	99	64.983	Labrus_bergylta
ENSGACG00000020319	npm1a	84	51.321	ENSLOCG00000009683	npm1a	98	53.409	Lepisosteus_oculatus
ENSGACG00000020319	npm1a	99	65.646	ENSMAMG00000009344	npm1a	82	65.646	Mastacembelus_armatus
ENSGACG00000020319	npm1a	99	65.064	ENSMZEG00005013717	npm1a	99	67.628	Maylandia_zebra
ENSGACG00000020319	npm1a	93	67.399	ENSMMOG00000007980	npm1a	99	68.727	Mola_mola
ENSGACG00000020319	npm1a	99	63.880	ENSMALG00000001146	npm1a	99	65.886	Monopterus_albus
ENSGACG00000020319	npm1a	99	62.903	ENSNBRG00000013172	npm1a	99	64.194	Neolamprologus_brichardi
ENSGACG00000020319	npm1a	99	62.458	ENSONIG00000001860	npm1a	98	66.890	Oreochromis_niloticus
ENSGACG00000020319	npm1a	99	65.517	ENSORLG00000010179	npm1a	99	67.241	Oryzias_latipes
ENSGACG00000020319	npm1a	99	64.360	ENSORLG00020020817	npm1a	99	66.090	Oryzias_latipes_hni
ENSGACG00000020319	npm1a	99	65.517	ENSORLG00015003439	npm1a	99	67.241	Oryzias_latipes_hsok
ENSGACG00000020319	npm1a	99	65.636	ENSOMEG00000007083	npm1a	99	65.292	Oryzias_melastigma
ENSGACG00000020319	npm1a	99	48.505	ENSPKIG00000023943	npm1a	99	50.165	Paramormyrops_kingsleyae
ENSGACG00000020319	npm1a	99	56.655	ENSPMGG00000011716	npm1a	100	56.897	Periophthalmus_magnuspinnatus
ENSGACG00000020319	npm1a	99	66.327	ENSPFOG00000019173	npm1a	99	67.797	Poecilia_formosa
ENSGACG00000020319	npm1a	99	65.772	ENSPLAG00000001093	npm1a	99	65.772	Poecilia_latipinna
ENSGACG00000020319	npm1a	99	66.216	ENSPMEG00000012523	npm1a	99	66.216	Poecilia_mexicana
ENSGACG00000020319	npm1a	99	65.772	ENSPREG00000001647	npm1a	99	66.443	Poecilia_reticulata
ENSGACG00000020319	npm1a	99	66.990	ENSPNYG00000019321	npm1a	99	66.343	Pundamilia_nyererei
ENSGACG00000020319	npm1a	97	60.900	ENSPNAG00000026891	npm1a	98	62.759	Pygocentrus_nattereri
ENSGACG00000020319	npm1a	99	57.483	ENSSFOG00015007074	npm1a	99	57.483	Scleropages_formosus
ENSGACG00000020319	npm1a	99	68.942	ENSSMAG00000019090	npm1a	99	69.283	Scophthalmus_maximus
ENSGACG00000020319	npm1a	99	70.608	ENSSDUG00000015609	npm1a	99	71.622	Seriola_dumerili
ENSGACG00000020319	npm1a	99	71.525	ENSSLDG00000017849	npm1a	99	72.542	Seriola_lalandi_dorsalis
ENSGACG00000020319	npm1a	99	66.316	ENSSPAG00000021660	npm1a	98	66.316	Stegastes_partitus
ENSGACG00000020319	npm1a	99	66.333	ENSTRUG00000024003	npm1a	99	66.557	Takifugu_rubripes
ENSGACG00000020319	npm1a	99	64.706	ENSTNIG00000010773	npm1a	99	67.128	Tetraodon_nigroviridis
ENSGACG00000020319	npm1a	99	58.983	ENSXCOG00000005958	npm1a	99	62.500	Xiphophorus_couchianus
ENSGACG00000020319	npm1a	99	64.238	ENSXMAG00000000396	npm1a	99	65.232	Xiphophorus_maculatus