EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000020521 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 8417 bases
Position: chrgroupVII:19475935-19484351
Accession: ZDB-GENE-081107-52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000027134	EST1	PF10374.9	4.5e-13	1	1
ENSGACP00000027134	EST1_DNA_bind	PF10373.9	1.4e-55	1	1
ENSGACP00000027134	PIN_4	PF13638.6	2.9e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000027186	-	3879	-	ENSGACP00000027134	1292 (aa)	-	G3QB68

Gene Model

Click here to download ENSGACG00000020521's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000020521's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000020521	smg6	100	53.664	ENSG00000070366	SMG6	100	59.659	Homo_sapiens
ENSGACG00000020521	smg6	100	77.679	ENSAPOG00000019448	smg6	85	78.885	Acanthochromis_polyacanthus
ENSGACG00000020521	smg6	99	53.909	ENSAMEG00000007632	SMG6	91	53.984	Ailuropoda_melanoleuca
ENSGACG00000020521	smg6	100	80.000	ENSACIG00000012997	smg6	88	80.000	Amphilophus_citrinellus
ENSGACG00000020521	smg6	100	77.712	ENSAOCG00000002630	smg6	90	79.033	Amphiprion_ocellaris
ENSGACG00000020521	smg6	100	77.455	ENSAPEG00000019101	smg6	90	78.736	Amphiprion_percula
ENSGACG00000020521	smg6	98	82.857	ENSATEG00000006483	smg6	82	82.857	Anabas_testudineus
ENSGACG00000020521	smg6	86	47.895	ENSACAG00000011783	SMG6	90	48.345	Anolis_carolinensis
ENSGACG00000020521	smg6	100	54.201	ENSANAG00000035760	SMG6	91	54.498	Aotus_nancymaae
ENSGACG00000020521	smg6	99	76.771	ENSACLG00000005288	smg6	90	76.113	Astatotilapia_calliptera
ENSGACG00000020521	smg6	81	66.886	ENSAMXG00000017326	smg6	91	58.810	Astyanax_mexicanus
ENSGACG00000020521	smg6	99	53.955	ENSBTAG00000000267	SMG6	91	54.210	Bos_taurus
ENSGACG00000020521	smg6	100	53.778	ENSCJAG00000001820	SMG6	91	53.886	Callithrix_jacchus
ENSGACG00000020521	smg6	99	53.675	ENSCAFG00000019260	SMG6	91	53.949	Canis_familiaris
ENSGACG00000020521	smg6	99	53.675	ENSCAFG00020009770	SMG6	91	53.949	Canis_lupus_dingo
ENSGACG00000020521	smg6	99	54.139	ENSCHIG00000021998	SMG6	91	54.120	Capra_hircus
ENSGACG00000020521	smg6	99	53.550	ENSTSYG00000003406	SMG6	100	59.280	Carlito_syrichta
ENSGACG00000020521	smg6	92	54.054	ENSCAPG00000016197	SMG6	90	55.819	Cavia_aperea
ENSGACG00000020521	smg6	100	52.889	ENSCPOG00000014878	SMG6	98	54.098	Cavia_porcellus
ENSGACG00000020521	smg6	100	54.052	ENSCCAG00000035801	SMG6	91	54.349	Cebus_capucinus
ENSGACG00000020521	smg6	100	53.466	ENSCATG00000031956	SMG6	91	53.761	Cercocebus_atys
ENSGACG00000020521	smg6	99	53.314	ENSCLAG00000006748	SMG6	94	53.719	Chinchilla_lanigera
ENSGACG00000020521	smg6	100	53.687	ENSCSAG00000013800	SMG6	91	53.982	Chlorocebus_sabaeus
ENSGACG00000020521	smg6	51	55.072	ENSCHOG00000005024	-	61	55.072	Choloepus_hoffmanni
ENSGACG00000020521	smg6	99	53.428	ENSCPBG00000020369	SMG6	89	53.453	Chrysemys_picta_bellii
ENSGACG00000020521	smg6	100	53.614	ENSCANG00000031764	SMG6	100	60.038	Colobus_angolensis_palliatus
ENSGACG00000020521	smg6	99	49.079	ENSCGRG00000007782	Smg6	92	49.259	Cricetulus_griseus_crigri
ENSGACG00000020521	smg6	99	79.070	ENSCSEG00000012757	smg6	87	79.070	Cynoglossus_semilaevis
ENSGACG00000020521	smg6	96	72.771	ENSCVAG00000012789	smg6	77	73.825	Cyprinodon_variegatus
ENSGACG00000020521	smg6	95	63.565	ENSDARG00000100481	smg6	78	63.565	Danio_rerio
ENSGACG00000020521	smg6	100	52.854	ENSDNOG00000048283	SMG6	91	53.299	Dasypus_novemcinctus
ENSGACG00000020521	smg6	100	50.074	ENSDORG00000016614	Smg6	97	53.086	Dipodomys_ordii
ENSGACG00000020521	smg6	92	90.000	ENSETEG00000016790	SMG6	83	90.000	Echinops_telfairi
ENSGACG00000020521	smg6	75	47.581	ENSEBUG00000005059	smg6	63	47.379	Eptatretus_burgeri
ENSGACG00000020521	smg6	99	53.619	ENSEASG00005009318	SMG6	90	53.829	Equus_asinus_asinus
ENSGACG00000020521	smg6	99	53.545	ENSECAG00000006519	SMG6	90	53.754	Equus_caballus
ENSGACG00000020521	smg6	99	45.874	ENSEEUG00000003493	SMG6	87	60.333	Erinaceus_europaeus
ENSGACG00000020521	smg6	97	65.178	ENSELUG00000005934	smg6	70	66.793	Esox_lucius
ENSGACG00000020521	smg6	99	54.256	ENSFCAG00000028817	SMG6	91	54.430	Felis_catus
ENSGACG00000020521	smg6	99	54.382	ENSFALG00000006538	SMG6	92	54.628	Ficedula_albicollis
ENSGACG00000020521	smg6	99	53.402	ENSFDAG00000015106	SMG6	93	55.187	Fukomys_damarensis
ENSGACG00000020521	smg6	99	79.487	ENSFHEG00000013282	smg6	82	79.487	Fundulus_heteroclitus
ENSGACG00000020521	smg6	68	76.555	ENSGMOG00000019077	smg6	67	76.555	Gadus_morhua
ENSGACG00000020521	smg6	100	53.738	ENSGALG00000003108	SMG6	88	53.669	Gallus_gallus
ENSGACG00000020521	smg6	100	68.868	ENSGAFG00000000379	smg6	90	69.549	Gambusia_affinis
ENSGACG00000020521	smg6	99	52.437	ENSGAGG00000025617	SMG6	92	52.135	Gopherus_agassizii
ENSGACG00000020521	smg6	100	53.614	ENSGGOG00000017156	SMG6	91	54.188	Gorilla_gorilla
ENSGACG00000020521	smg6	99	76.847	ENSHBUG00000021311	smg6	84	76.187	Haplochromis_burtoni
ENSGACG00000020521	smg6	99	53.648	ENSHGLG00000012882	SMG6	93	54.772	Heterocephalus_glaber_female
ENSGACG00000020521	smg6	99	53.721	ENSHGLG00100017815	SMG6	93	54.772	Heterocephalus_glaber_male
ENSGACG00000020521	smg6	81	69.138	ENSHCOG00000008761	smg6	84	69.787	Hippocampus_comes
ENSGACG00000020521	smg6	92	61.886	ENSIPUG00000012493	smg6	75	62.319	Ictalurus_punctatus
ENSGACG00000020521	smg6	99	53.595	ENSSTOG00000028127	SMG6	100	51.200	Ictidomys_tridecemlineatus
ENSGACG00000020521	smg6	77	49.759	ENSJJAG00000015367	Smg6	84	48.687	Jaculus_jaculus
ENSGACG00000020521	smg6	97	88.462	ENSKMAG00000000279	smg6	82	88.462	Kryptolebias_marmoratus
ENSGACG00000020521	smg6	100	77.075	ENSLBEG00000002184	smg6	86	76.654	Labrus_bergylta
ENSGACG00000020521	smg6	52	48.418	ENSLACG00000000806	-	85	49.103	Latimeria_chalumnae
ENSGACG00000020521	smg6	83	66.299	ENSLOCG00000006448	smg6	90	61.778	Lepisosteus_oculatus
ENSGACG00000020521	smg6	99	53.323	ENSLAFG00000001261	SMG6	90	53.476	Loxodonta_africana
ENSGACG00000020521	smg6	100	53.761	ENSMFAG00000003394	SMG6	91	54.056	Macaca_fascicularis
ENSGACG00000020521	smg6	100	53.466	ENSMMUG00000023161	SMG6	91	53.761	Macaca_mulatta
ENSGACG00000020521	smg6	100	51.745	ENSMNEG00000044592	SMG6	91	52.278	Macaca_nemestrina
ENSGACG00000020521	smg6	95	60.289	ENSMLEG00000029353	SMG6	92	60.980	Mandrillus_leucophaeus
ENSGACG00000020521	smg6	100	78.323	ENSMAMG00000020119	smg6	87	80.000	Mastacembelus_armatus
ENSGACG00000020521	smg6	99	76.753	ENSMZEG00005024736	smg6	84	76.021	Maylandia_zebra
ENSGACG00000020521	smg6	71	50.416	ENSMGAG00000005401	-	86	50.416	Meleagris_gallopavo
ENSGACG00000020521	smg6	99	53.783	ENSMICG00000012913	SMG6	90	53.943	Microcebus_murinus
ENSGACG00000020521	smg6	100	70.580	ENSMMOG00000010883	smg6	90	70.459	Mola_mola
ENSGACG00000020521	smg6	99	53.635	ENSMODG00000010622	SMG6	74	60.294	Monodelphis_domestica
ENSGACG00000020521	smg6	96	77.526	ENSMALG00000001106	smg6	81	77.177	Monopterus_albus
ENSGACG00000020521	smg6	100	52.829	MGP_CAROLIEiJ_G0016729	Smg6	98	64.560	Mus_caroli
ENSGACG00000020521	smg6	100	52.790	ENSMUSG00000038290	Smg6	96	66.006	Mus_musculus
ENSGACG00000020521	smg6	100	52.483	MGP_PahariEiJ_G0017866	Smg6	95	66.962	Mus_pahari
ENSGACG00000020521	smg6	100	52.193	MGP_SPRETEiJ_G0017572	Smg6	96	65.722	Mus_spretus
ENSGACG00000020521	smg6	99	53.886	ENSMPUG00000013046	SMG6	91	54.058	Mustela_putorius_furo
ENSGACG00000020521	smg6	99	53.749	ENSMLUG00000005739	SMG6	91	53.949	Myotis_lucifugus
ENSGACG00000020521	smg6	99	53.234	ENSNGAG00000007287	Smg6	98	52.800	Nannospalax_galili
ENSGACG00000020521	smg6	99	80.000	ENSNBRG00000009511	smg6	91	78.788	Neolamprologus_brichardi
ENSGACG00000020521	smg6	100	53.909	ENSNLEG00000017171	SMG6	100	59.659	Nomascus_leucogenys
ENSGACG00000020521	smg6	99	53.120	ENSMEUG00000015804	SMG6	92	52.643	Notamacropus_eugenii
ENSGACG00000020521	smg6	63	66.667	ENSOPRG00000000579	SMG6	91	51.026	Ochotona_princeps
ENSGACG00000020521	smg6	99	46.771	ENSODEG00000008038	SMG6	90	46.835	Octodon_degus
ENSGACG00000020521	smg6	99	80.000	ENSONIG00000005594	smg6	91	78.362	Oreochromis_niloticus
ENSGACG00000020521	smg6	99	53.378	ENSOCUG00000013018	SMG6	91	53.715	Oryctolagus_cuniculus
ENSGACG00000020521	smg6	98	73.474	ENSORLG00000003317	smg6	78	73.552	Oryzias_latipes
ENSGACG00000020521	smg6	98	72.642	ENSORLG00020015343	smg6	78	73.098	Oryzias_latipes_hni
ENSGACG00000020521	smg6	98	73.490	ENSORLG00015020454	smg6	78	73.569	Oryzias_latipes_hsok
ENSGACG00000020521	smg6	98	73.490	ENSOMEG00000010838	smg6	80	73.569	Oryzias_melastigma
ENSGACG00000020521	smg6	99	53.487	ENSOGAG00000004483	SMG6	90	54.052	Otolemur_garnettii
ENSGACG00000020521	smg6	99	54.213	ENSOARG00000015076	SMG6	93	54.195	Ovis_aries
ENSGACG00000020521	smg6	100	53.659	ENSPPAG00000043296	SMG6	91	54.275	Pan_paniscus
ENSGACG00000020521	smg6	99	54.256	ENSPPRG00000014581	SMG6	91	54.430	Panthera_pardus
ENSGACG00000020521	smg6	99	54.256	ENSPTIG00000008925	SMG6	100	59.848	Panthera_tigris_altaica
ENSGACG00000020521	smg6	100	53.669	ENSPTRG00000008544	SMG6	100	59.659	Pan_troglodytes
ENSGACG00000020521	smg6	100	53.761	ENSPANG00000024588	SMG6	91	54.182	Papio_anubis
ENSGACG00000020521	smg6	90	51.485	ENSPSIG00000006660	SMG6	89	50.531	Pelodiscus_sinensis
ENSGACG00000020521	smg6	93	77.490	ENSPMGG00000000844	smg6	89	77.490	Periophthalmus_magnuspinnatus
ENSGACG00000020521	smg6	99	53.382	ENSPEMG00000020707	Smg6	100	53.441	Peromyscus_maniculatus_bairdii
ENSGACG00000020521	smg6	100	73.505	ENSPFOG00000012035	smg6	90	73.920	Poecilia_formosa
ENSGACG00000020521	smg6	99	72.311	ENSPLAG00000017660	smg6	90	72.285	Poecilia_latipinna
ENSGACG00000020521	smg6	99	73.074	ENSPMEG00000000258	smg6	90	72.210	Poecilia_mexicana
ENSGACG00000020521	smg6	99	71.646	ENSPREG00000010066	smg6	88	72.443	Poecilia_reticulata
ENSGACG00000020521	smg6	100	50.330	ENSPPYG00000007790	SMG6	91	51.073	Pongo_abelii
ENSGACG00000020521	smg6	95	62.500	ENSPCAG00000000552	SMG6	87	63.183	Procavia_capensis
ENSGACG00000020521	smg6	99	53.835	ENSPCOG00000020925	SMG6	90	53.903	Propithecus_coquereli
ENSGACG00000020521	smg6	87	63.469	ENSPVAG00000002159	SMG6	68	63.732	Pteropus_vampyrus
ENSGACG00000020521	smg6	99	76.287	ENSPNYG00000024151	smg6	90	75.247	Pundamilia_nyererei
ENSGACG00000020521	smg6	93	60.111	ENSPNAG00000015480	smg6	78	59.380	Pygocentrus_nattereri
ENSGACG00000020521	smg6	100	52.850	ENSRNOG00000003041	Smg6	97	64.286	Rattus_norvegicus
ENSGACG00000020521	smg6	100	54.201	ENSRBIG00000024746	SMG6	91	54.498	Rhinopithecus_bieti
ENSGACG00000020521	smg6	100	54.424	ENSRROG00000030423	SMG6	100	60.038	Rhinopithecus_roxellana
ENSGACG00000020521	smg6	100	53.978	ENSSBOG00000022518	SMG6	91	52.788	Saimiri_boliviensis_boliviensis
ENSGACG00000020521	smg6	99	53.582	ENSSHAG00000010045	SMG6	90	53.755	Sarcophilus_harrisii
ENSGACG00000020521	smg6	98	58.709	ENSSFOG00015005436	smg6	76	59.212	Scleropages_formosus
ENSGACG00000020521	smg6	98	80.000	ENSSMAG00000019777	smg6	80	80.000	Scophthalmus_maximus
ENSGACG00000020521	smg6	98	81.493	ENSSDUG00000016412	smg6	84	79.487	Seriola_dumerili
ENSGACG00000020521	smg6	95	80.960	ENSSLDG00000020747	smg6	88	79.487	Seriola_lalandi_dorsalis
ENSGACG00000020521	smg6	99	54.148	ENSSPUG00000007152	SMG6	90	53.846	Sphenodon_punctatus
ENSGACG00000020521	smg6	100	77.290	ENSSPAG00000015633	smg6	85	78.529	Stegastes_partitus
ENSGACG00000020521	smg6	99	54.076	ENSSSCG00000017826	SMG6	91	54.139	Sus_scrofa
ENSGACG00000020521	smg6	99	53.513	ENSTGUG00000005836	SMG6	91	53.518	Taeniopygia_guttata
ENSGACG00000020521	smg6	99	82.759	ENSTRUG00000000358	smg6	88	85.714	Takifugu_rubripes
ENSGACG00000020521	smg6	100	73.779	ENSTNIG00000016164	smg6	90	74.455	Tetraodon_nigroviridis
ENSGACG00000020521	smg6	99	51.146	ENSTBEG00000011424	SMG6	91	50.893	Tupaia_belangeri
ENSGACG00000020521	smg6	90	57.372	ENSTTRG00000001175	SMG6	81	57.625	Tursiops_truncatus
ENSGACG00000020521	smg6	99	53.875	ENSUAMG00000025152	SMG6	93	53.755	Ursus_americanus
ENSGACG00000020521	smg6	99	53.835	ENSUMAG00000009306	SMG6	93	53.909	Ursus_maritimus
ENSGACG00000020521	smg6	83	85.185	ENSVPAG00000000225	SMG6	78	85.185	Vicugna_pacos
ENSGACG00000020521	smg6	99	53.986	ENSVVUG00000021727	SMG6	92	54.290	Vulpes_vulpes
ENSGACG00000020521	smg6	100	49.701	ENSXETG00000023799	SMG6	93	49.550	Xenopus_tropicalis
ENSGACG00000020521	smg6	100	71.185	ENSXCOG00000009867	smg6	88	70.561	Xiphophorus_couchianus
ENSGACG00000020521	smg6	100	71.418	ENSXMAG00000010321	smg6	88	71.482	Xiphophorus_maculatus