EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000020580 (Gene tree)
Gene ID: -
Gene Symbol: scaf4a
Alias: fa96d07|si:dkey-50p8.3|wu:fa96d07
Full Name: SR-related CTD-associated factor 4a
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 7657 bases
Position: chrgroupVII:20595160-20602816
Accession: ZDB-GENE-030131-9003
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000027214	RRM_1	PF00076.22	3.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000027266	-	2973	-	ENSGACP00000027214	991 (aa)	-	G3QBE8

Gene Model

Click here to download ENSGACG00000020580's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000020580's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000020580	scaf4a	54	70.122	ENSG00000156304	SCAF4	70	55.270	Homo_sapiens
ENSGACG00000020580	scaf4a	87	81.917	ENSAPOG00000002946	scaf4a	73	80.717	Acanthochromis_polyacanthus
ENSGACG00000020580	scaf4a	50	60.837	ENSAPOG00000019615	scaf4b	52	72.143	Acanthochromis_polyacanthus
ENSGACG00000020580	scaf4a	50	59.470	ENSAOCG00000010433	scaf4b	52	72.857	Amphiprion_ocellaris
ENSGACG00000020580	scaf4a	85	81.735	ENSAOCG00000000615	scaf4a	73	80.717	Amphiprion_ocellaris
ENSGACG00000020580	scaf4a	50	59.470	ENSAPEG00000010913	scaf4b	52	72.857	Amphiprion_percula
ENSGACG00000020580	scaf4a	85	81.279	ENSAPEG00000021229	scaf4a	73	80.269	Amphiprion_percula
ENSGACG00000020580	scaf4a	58	59.535	ENSAPLG00000002509	SCAF4	68	53.181	Anas_platyrhynchos
ENSGACG00000020580	scaf4a	54	70.122	ENSANAG00000037494	SCAF4	70	55.270	Aotus_nancymaae
ENSGACG00000020580	scaf4a	53	60.687	ENSACLG00000024833	scaf4b	52	72.143	Astatotilapia_calliptera
ENSGACG00000020580	scaf4a	54	70.122	ENSBTAG00000018855	SCAF4	70	54.359	Bos_taurus
ENSGACG00000020580	scaf4a	54	70.122	ENSCJAG00000008993	SCAF4	65	70.122	Callithrix_jacchus
ENSGACG00000020580	scaf4a	52	70.122	ENSCAFG00020026019	SCAF4	73	53.743	Canis_lupus_dingo
ENSGACG00000020580	scaf4a	53	70.122	ENSTSYG00000011344	SCAF4	50	70.122	Carlito_syrichta
ENSGACG00000020580	scaf4a	53	70.122	ENSCCAG00000033727	SCAF4	83	47.680	Cebus_capucinus
ENSGACG00000020580	scaf4a	55	71.951	ENSCGRG00000014360	Scaf4	68	50.990	Cricetulus_griseus_crigri
ENSGACG00000020580	scaf4a	96	60.282	ENSCSEG00000019549	scaf4a	79	59.940	Cynoglossus_semilaevis
ENSGACG00000020580	scaf4a	51	56.000	ENSCVAG00000009142	scaf4b	53	70.139	Cyprinodon_variegatus
ENSGACG00000020580	scaf4a	82	56.218	ENSDARG00000077093	scaf4a	70	56.218	Danio_rerio
ENSGACG00000020580	scaf4a	54	69.512	ENSDNOG00000019014	SCAF4	66	49.109	Dasypus_novemcinctus
ENSGACG00000020580	scaf4a	63	82.292	ENSELUG00000009909	scaf4a	52	82.812	Esox_lucius
ENSGACG00000020580	scaf4a	59	50.345	ENSELUG00000002779	SCAF8	62	60.870	Esox_lucius
ENSGACG00000020580	scaf4a	85	71.746	ENSFHEG00000017866	scaf4a	69	71.472	Fundulus_heteroclitus
ENSGACG00000020580	scaf4a	64	58.427	ENSFHEG00000007634	scaf4b	55	71.329	Fundulus_heteroclitus
ENSGACG00000020580	scaf4a	81	60.945	ENSGMOG00000015188	scaf4a	80	58.032	Gadus_morhua
ENSGACG00000020580	scaf4a	69	77.972	ENSGAFG00000019460	scaf4a	78	72.644	Gambusia_affinis
ENSGACG00000020580	scaf4a	65	62.500	ENSGGOG00000015557	SCAF4	63	70.122	Gorilla_gorilla
ENSGACG00000020580	scaf4a	84	73.774	ENSHBUG00000007920	scaf4a	74	73.629	Haplochromis_burtoni
ENSGACG00000020580	scaf4a	71	73.585	ENSIPUG00000011285	scaf4	56	72.727	Ictalurus_punctatus
ENSGACG00000020580	scaf4a	52	70.732	ENSJJAG00000019447	Scaf4	69	51.058	Jaculus_jaculus
ENSGACG00000020580	scaf4a	64	58.077	ENSKMAG00000005742	scaf4b	54	66.250	Kryptolebias_marmoratus
ENSGACG00000020580	scaf4a	85	78.214	ENSLBEG00000014675	scaf4a	72	76.818	Labrus_bergylta
ENSGACG00000020580	scaf4a	77	50.529	ENSLACG00000013913	SCAF4	76	49.096	Latimeria_chalumnae
ENSGACG00000020580	scaf4a	84	57.039	ENSLOCG00000009162	scaf4a	77	54.567	Lepisosteus_oculatus
ENSGACG00000020580	scaf4a	53	75.647	ENSMAMG00000013223	scaf4a	63	71.975	Mastacembelus_armatus
ENSGACG00000020580	scaf4a	84	75.711	ENSMZEG00005024349	scaf4a	74	76.623	Maylandia_zebra
ENSGACG00000020580	scaf4a	52	71.951	ENSMAUG00000013307	Scaf4	74	52.941	Mesocricetus_auratus
ENSGACG00000020580	scaf4a	54	70.122	ENSMICG00000005256	SCAF4	70	54.684	Microcebus_murinus
ENSGACG00000020580	scaf4a	52	72.956	ENSMOCG00000012087	Scaf4	73	52.927	Microtus_ochrogaster
ENSGACG00000020580	scaf4a	58	59.722	ENSMODG00000021040	SCAF4	71	52.835	Monodelphis_domestica
ENSGACG00000020580	scaf4a	50	75.000	ENSMALG00000013825	scaf4a	70	75.000	Monopterus_albus
ENSGACG00000020580	scaf4a	53	70.732	MGP_PahariEiJ_G0016649	Scaf4	71	54.912	Mus_pahari
ENSGACG00000020580	scaf4a	55	70.732	MGP_SPRETEiJ_G0021850	Scaf4	66	54.523	Mus_spretus
ENSGACG00000020580	scaf4a	54	70.732	ENSNGAG00000005214	Scaf4	70	52.284	Nannospalax_galili
ENSGACG00000020580	scaf4a	54	70.122	ENSNLEG00000003569	SCAF4	70	55.013	Nomascus_leucogenys
ENSGACG00000020580	scaf4a	84	73.305	ENSONIG00000004687	scaf4a	82	66.819	Oreochromis_niloticus
ENSGACG00000020580	scaf4a	53	53.929	ENSORLG00000003420	scaf4b	56	72.662	Oryzias_latipes
ENSGACG00000020580	scaf4a	86	64.343	ENSORLG00000004384	scaf4a	75	65.408	Oryzias_latipes
ENSGACG00000020580	scaf4a	77	54.286	ENSORLG00020013853	scaf4b	63	62.437	Oryzias_latipes_hni
ENSGACG00000020580	scaf4a	86	64.343	ENSORLG00020011857	scaf4a	75	65.209	Oryzias_latipes_hni
ENSGACG00000020580	scaf4a	86	64.980	ENSORLG00015017880	scaf4a	81	60.597	Oryzias_latipes_hsok
ENSGACG00000020580	scaf4a	86	63.086	ENSOMEG00000014482	scaf4a	75	65.680	Oryzias_melastigma
ENSGACG00000020580	scaf4a	53	70.122	ENSOARG00000013894	SCAF4	69	52.551	Ovis_aries
ENSGACG00000020580	scaf4a	54	70.122	ENSPPAG00000028535	SCAF4	70	55.270	Pan_paniscus
ENSGACG00000020580	scaf4a	54	70.122	ENSPTRG00000013848	SCAF4	70	55.270	Pan_troglodytes
ENSGACG00000020580	scaf4a	64	66.953	ENSPKIG00000022408	scaf4a	83	65.657	Paramormyrops_kingsleyae
ENSGACG00000020580	scaf4a	72	66.791	ENSPMGG00000016741	scaf4a	66	65.328	Periophthalmus_magnuspinnatus
ENSGACG00000020580	scaf4a	57	60.185	ENSPCIG00000028183	SCAF4	64	51.842	Phascolarctos_cinereus
ENSGACG00000020580	scaf4a	84	70.507	ENSPFOG00000017156	scaf4a	85	72.184	Poecilia_formosa
ENSGACG00000020580	scaf4a	51	56.107	ENSPLAG00000004403	-	51	68.027	Poecilia_latipinna
ENSGACG00000020580	scaf4a	71	73.186	ENSPLAG00000001972	scaf4a	86	72.424	Poecilia_latipinna
ENSGACG00000020580	scaf4a	51	56.489	ENSPMEG00000006666	-	52	69.388	Poecilia_mexicana
ENSGACG00000020580	scaf4a	50	57.519	ENSPREG00000013510	scaf4b	53	64.375	Poecilia_reticulata
ENSGACG00000020580	scaf4a	54	70.122	ENSPCOG00000018710	SCAF4	69	55.102	Propithecus_coquereli
ENSGACG00000020580	scaf4a	53	60.305	ENSPNYG00000010526	scaf4b	52	72.143	Pundamilia_nyererei
ENSGACG00000020580	scaf4a	75	56.022	ENSPNAG00000016892	scaf4a	76	55.263	Pygocentrus_nattereri
ENSGACG00000020580	scaf4a	53	71.341	ENSRNOG00000002104	Scaf4	66	54.034	Rattus_norvegicus
ENSGACG00000020580	scaf4a	58	60.185	ENSSHAG00000001581	SCAF4	72	51.070	Sarcophilus_harrisii
ENSGACG00000020580	scaf4a	72	55.158	ENSSFOG00015006338	scaf4a	70	54.352	Scleropages_formosus
ENSGACG00000020580	scaf4a	87	75.354	ENSSMAG00000017901	scaf4a	66	80.050	Scophthalmus_maximus
ENSGACG00000020580	scaf4a	63	59.245	ENSSMAG00000003738	scaf4b	52	69.930	Scophthalmus_maximus
ENSGACG00000020580	scaf4a	85	79.341	ENSSDUG00000012918	scaf4a	73	80.396	Seriola_dumerili
ENSGACG00000020580	scaf4a	68	60.687	ENSSDUG00000012380	scaf4b	54	67.296	Seriola_dumerili
ENSGACG00000020580	scaf4a	85	79.341	ENSSLDG00000021671	scaf4a	73	80.396	Seriola_lalandi_dorsalis
ENSGACG00000020580	scaf4a	68	60.687	ENSSLDG00000023152	-	54	67.296	Seriola_lalandi_dorsalis
ENSGACG00000020580	scaf4a	65	58.555	ENSTRUG00000009536	-	58	63.855	Takifugu_rubripes
ENSGACG00000020580	scaf4a	97	59.649	ENSTNIG00000009945	scaf4a	84	60.496	Tetraodon_nigroviridis
ENSGACG00000020580	scaf4a	52	69.512	ENSUMAG00000016962	SCAF4	72	53.388	Ursus_maritimus
ENSGACG00000020580	scaf4a	63	61.776	ENSXETG00000007351	scaf4	77	51.196	Xenopus_tropicalis