EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000000010 (Gene tree)
Gene ID: -
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 18779 bases
Position: chrNHOQ01000004.1:288174-306952
Accession: ZDB-GENE-061110-91
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000000012	MMR_HSR1	PF01926.23	1.7e-08	1	1
ENSGAFP00000000014	MMR_HSR1	PF01926.23	1.7e-08	1	1
ENSGAFP00000000013	MMR_HSR1	PF01926.23	1.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000000013	-	4000	-	ENSGAFP00000000013	470 (aa)	-	-
ENSGAFT00000000012	-	4036	-	ENSGAFP00000000012	482 (aa)	-	-
ENSGAFT00000000014	-	1386	-	ENSGAFP00000000014	461 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000000010's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000000010's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000000010	srl	97	78.571	ENSGAFG00000016984	SRL	99	78.571
ENSGAFG00000000010	srl	81	33.244	ENSGAFG00000005665	ehd3	69	33.506
ENSGAFG00000000010	srl	88	31.852	ENSGAFG00000000730	ehd1a	73	31.852
ENSGAFG00000000010	srl	85	32.911	ENSGAFG00000007267	ehd4	70	32.911
ENSGAFG00000000010	srl	87	31.343	ENSGAFG00000004457	ehd2a	71	31.343

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000000010	srl	98	81.319	ENSG00000185739	SRL	99	83.256	Homo_sapiens
ENSGAFG00000000010	srl	100	94.904	ENSAPOG00000018093	srl	100	94.904	Acanthochromis_polyacanthus
ENSGAFG00000000010	srl	96	77.828	ENSAPOG00000012432	SRL	98	77.828	Acanthochromis_polyacanthus
ENSGAFG00000000010	srl	99	81.046	ENSAMEG00000010862	SRL	52	81.046	Ailuropoda_melanoleuca
ENSGAFG00000000010	srl	97	76.339	ENSACIG00000015419	SRL	99	76.339	Amphilophus_citrinellus
ENSGAFG00000000010	srl	98	94.900	ENSACIG00000015799	srl	100	94.900	Amphilophus_citrinellus
ENSGAFG00000000010	srl	96	77.928	ENSAOCG00000017049	SRL	97	78.153	Amphiprion_ocellaris
ENSGAFG00000000010	srl	94	95.853	ENSAOCG00000007574	srl	100	95.853	Amphiprion_ocellaris
ENSGAFG00000000010	srl	100	95.238	ENSAPEG00000006911	srl	100	95.238	Amphiprion_percula
ENSGAFG00000000010	srl	96	74.718	ENSAPEG00000006533	SRL	96	75.225	Amphiprion_percula
ENSGAFG00000000010	srl	100	95.031	ENSATEG00000024315	srl	100	95.031	Anabas_testudineus
ENSGAFG00000000010	srl	96	77.412	ENSATEG00000009643	SRL	52	77.632	Anabas_testudineus
ENSGAFG00000000010	srl	100	80.533	ENSACAG00000016380	SRL	89	81.762	Anolis_carolinensis
ENSGAFG00000000010	srl	98	74.569	ENSACLG00000024674	SRL	58	74.730	Astatotilapia_calliptera
ENSGAFG00000000010	srl	100	94.824	ENSACLG00000027685	srl	100	94.824	Astatotilapia_calliptera
ENSGAFG00000000010	srl	91	79.286	ENSAMXG00000038693	SRL	100	75.276	Astyanax_mexicanus
ENSGAFG00000000010	srl	100	90.456	ENSAMXG00000018789	srl	92	90.456	Astyanax_mexicanus
ENSGAFG00000000010	srl	98	82.483	ENSBTAG00000001078	SRL	57	82.301	Bos_taurus
ENSGAFG00000000010	srl	96	83.032	ENSCJAG00000019750	SRL	100	79.915	Callithrix_jacchus
ENSGAFG00000000010	srl	99	81.223	ENSCAFG00000019233	SRL	85	81.223	Canis_familiaris
ENSGAFG00000000010	srl	98	81.579	ENSCAFG00020025024	SRL	56	81.898	Canis_lupus_dingo
ENSGAFG00000000010	srl	99	81.699	ENSCHIG00000017927	SRL	57	82.119	Capra_hircus
ENSGAFG00000000010	srl	100	80.127	ENSTSYG00000007919	SRL	99	84.186	Carlito_syrichta
ENSGAFG00000000010	srl	97	82.472	ENSCPOG00000012643	SRL	100	79.873	Cavia_porcellus
ENSGAFG00000000010	srl	96	77.828	ENSCCAG00000032646	SRL	100	84.697	Cebus_capucinus
ENSGAFG00000000010	srl	97	82.472	ENSCATG00000032227	-	100	79.915	Cercocebus_atys
ENSGAFG00000000010	srl	97	82.697	ENSCLAG00000016242	SRL	100	80.085	Chinchilla_lanigera
ENSGAFG00000000010	srl	84	86.494	ENSCHOG00000001618	SRL	52	86.494	Choloepus_hoffmanni
ENSGAFG00000000010	srl	96	86.528	ENSCPBG00000026371	SRL	99	80.745	Chrysemys_picta_bellii
ENSGAFG00000000010	srl	90	60.671	ENSCING00000005231	-	93	60.671	Ciona_intestinalis
ENSGAFG00000000010	srl	98	81.319	ENSCANG00000035872	SRL	99	83.256	Colobus_angolensis_palliatus
ENSGAFG00000000010	srl	99	81.838	ENSCGRG00001016630	Srl	100	80.720	Cricetulus_griseus_chok1gshd
ENSGAFG00000000010	srl	99	81.838	ENSCGRG00000005458	Srl	100	80.720	Cricetulus_griseus_crigri
ENSGAFG00000000010	srl	99	74.026	ENSCSEG00000011866	SRL	93	74.242	Cynoglossus_semilaevis
ENSGAFG00000000010	srl	100	94.681	ENSCSEG00000016151	srl	100	94.681	Cynoglossus_semilaevis
ENSGAFG00000000010	srl	100	97.095	ENSCVAG00000003513	srl	100	97.095	Cyprinodon_variegatus
ENSGAFG00000000010	srl	98	76.304	ENSCVAG00000022465	SRL	61	76.356	Cyprinodon_variegatus
ENSGAFG00000000010	srl	100	90.683	ENSDARG00000104587	srl	100	90.683	Danio_rerio
ENSGAFG00000000010	srl	82	78.125	ENSDARG00000112959	CABZ01072309.1	100	78.125	Danio_rerio
ENSGAFG00000000010	srl	98	82.080	ENSDNOG00000011643	SRL	54	81.898	Dasypus_novemcinctus
ENSGAFG00000000010	srl	98	82.159	ENSDORG00000014807	Srl	100	80.508	Dipodomys_ordii
ENSGAFG00000000010	srl	80	66.043	ENSEBUG00000015937	srl	94	66.043	Eptatretus_burgeri
ENSGAFG00000000010	srl	98	82.483	ENSEASG00005000942	SRL	55	82.119	Equus_asinus_asinus
ENSGAFG00000000010	srl	98	82.483	ENSECAG00000024219	SRL	99	80.297	Equus_caballus
ENSGAFG00000000010	srl	100	86.653	ENSELUG00000015616	srl	100	86.653	Esox_lucius
ENSGAFG00000000010	srl	100	79.493	ENSFCAG00000022075	SRL	100	79.704	Felis_catus
ENSGAFG00000000010	srl	98	82.483	ENSFALG00000004328	SRL	63	83.864	Ficedula_albicollis
ENSGAFG00000000010	srl	97	83.371	ENSFDAG00000006199	SRL	100	80.932	Fukomys_damarensis
ENSGAFG00000000010	srl	100	74.174	ENSFHEG00000011854	SRL	99	77.703	Fundulus_heteroclitus
ENSGAFG00000000010	srl	100	97.303	ENSFHEG00000011239	srl	100	97.303	Fundulus_heteroclitus
ENSGAFG00000000010	srl	94	91.189	ENSGMOG00000014954	srl	100	91.189	Gadus_morhua
ENSGAFG00000000010	srl	99	82.096	ENSGALG00000038884	SRL	99	81.104	Gallus_gallus
ENSGAFG00000000010	srl	94	94.286	ENSGACG00000011332	srl	100	94.286	Gasterosteus_aculeatus
ENSGAFG00000000010	srl	97	82.472	ENSGGOG00000011312	-	100	79.915	Gorilla_gorilla
ENSGAFG00000000010	srl	99	74.414	ENSHBUG00000015710	SRL	58	74.839	Haplochromis_burtoni
ENSGAFG00000000010	srl	100	94.824	ENSHBUG00000007581	srl	100	94.824	Haplochromis_burtoni
ENSGAFG00000000010	srl	97	83.596	ENSHGLG00000015271	SRL	100	80.932	Heterocephalus_glaber_female
ENSGAFG00000000010	srl	97	83.596	ENSHGLG00100019378	SRL	100	80.932	Heterocephalus_glaber_male
ENSGAFG00000000010	srl	96	75.604	ENSHCOG00000001012	SRL	50	75.604	Hippocampus_comes
ENSGAFG00000000010	srl	100	93.644	ENSHCOG00000008687	srl	99	95.089	Hippocampus_comes
ENSGAFG00000000010	srl	95	70.872	ENSIPUG00000011609	SRL	95	70.872	Ictalurus_punctatus
ENSGAFG00000000010	srl	100	90.476	ENSIPUG00000012513	srl	100	90.476	Ictalurus_punctatus
ENSGAFG00000000010	srl	97	82.921	ENSSTOG00000021151	-	100	80.085	Ictidomys_tridecemlineatus
ENSGAFG00000000010	srl	100	81.144	ENSJJAG00000016400	Srl	100	81.144	Jaculus_jaculus
ENSGAFG00000000010	srl	98	95.551	ENSKMAG00000014115	srl	95	95.551	Kryptolebias_marmoratus
ENSGAFG00000000010	srl	96	78.005	ENSKMAG00000019537	SRL	100	78.005	Kryptolebias_marmoratus
ENSGAFG00000000010	srl	100	94.055	ENSLBEG00000026643	srl	100	94.055	Labrus_bergylta
ENSGAFG00000000010	srl	96	76.697	ENSLBEG00000013811	SRL	95	76.923	Labrus_bergylta
ENSGAFG00000000010	srl	100	82.816	ENSLACG00000002825	SRL	100	84.071	Latimeria_chalumnae
ENSGAFG00000000010	srl	98	88.079	ENSLOCG00000002644	srl	97	88.079	Lepisosteus_oculatus
ENSGAFG00000000010	srl	96	82.805	ENSLAFG00000006329	SRL	50	82.805	Loxodonta_africana
ENSGAFG00000000010	srl	93	83.256	ENSMFAG00000037383	SRL	99	83.256	Macaca_fascicularis
ENSGAFG00000000010	srl	99	80.828	ENSMNEG00000019236	-	97	80.828	Macaca_nemestrina
ENSGAFG00000000010	srl	98	74.725	ENSMLEG00000032156	SRL	100	73.573	Mandrillus_leucophaeus
ENSGAFG00000000010	srl	96	76.652	ENSMAMG00000013756	SRL	53	76.652	Mastacembelus_armatus
ENSGAFG00000000010	srl	99	92.077	ENSMAMG00000023322	srl	99	92.128	Mastacembelus_armatus
ENSGAFG00000000010	srl	99	74.200	ENSMZEG00005004010	SRL	59	74.200	Maylandia_zebra
ENSGAFG00000000010	srl	100	94.824	ENSMZEG00005004548	srl	100	94.824	Maylandia_zebra
ENSGAFG00000000010	srl	98	82.080	ENSMGAG00000009342	SRL	96	84.433	Meleagris_gallopavo
ENSGAFG00000000010	srl	98	81.978	ENSMICG00000032307	SRL	100	80.550	Microcebus_murinus
ENSGAFG00000000010	srl	99	81.046	ENSMOCG00000008208	Srl	100	79.873	Microtus_ochrogaster
ENSGAFG00000000010	srl	95	75.771	ENSMMOG00000021572	SRL	99	75.771	Mola_mola
ENSGAFG00000000010	srl	98	93.778	ENSMMOG00000013970	srl	100	93.778	Mola_mola
ENSGAFG00000000010	srl	98	82.561	ENSMODG00000016380	-	50	84.009	Monodelphis_domestica
ENSGAFG00000000010	srl	100	93.617	ENSMALG00000005039	srl	100	93.617	Monopterus_albus
ENSGAFG00000000010	srl	91	78.520	ENSMALG00000000670	SRL	98	78.520	Monopterus_albus
ENSGAFG00000000010	srl	99	82.495	MGP_CAROLIEiJ_G0020400	Srl	100	81.780	Mus_caroli
ENSGAFG00000000010	srl	99	82.495	ENSMUSG00000022519	Srl	100	81.780	Mus_musculus
ENSGAFG00000000010	srl	99	82.495	MGP_SPRETEiJ_G0021294	Srl	100	81.780	Mus_spretus
ENSGAFG00000000010	srl	98	81.858	ENSMPUG00000015025	SRL	55	81.858	Mustela_putorius_furo
ENSGAFG00000000010	srl	98	82.237	ENSMLUG00000030733	SRL	56	83.371	Myotis_lucifugus
ENSGAFG00000000010	srl	97	83.820	ENSNGAG00000019741	Srl	100	81.144	Nannospalax_galili
ENSGAFG00000000010	srl	100	94.904	ENSNBRG00000023775	srl	100	94.904	Neolamprologus_brichardi
ENSGAFG00000000010	srl	99	73.561	ENSNBRG00000002422	SRL	56	76.389	Neolamprologus_brichardi
ENSGAFG00000000010	srl	97	77.079	ENSNLEG00000029051	SRL	100	74.630	Nomascus_leucogenys
ENSGAFG00000000010	srl	97	77.303	ENSOPRG00000000477	-	53	76.432	Ochotona_princeps
ENSGAFG00000000010	srl	97	83.146	ENSODEG00000013256	SRL	100	80.297	Octodon_degus
ENSGAFG00000000010	srl	100	94.824	ENSONIG00000005192	srl	100	94.824	Oreochromis_niloticus
ENSGAFG00000000010	srl	96	82.579	ENSOCUG00000025140	SRL	50	80.963	Oryctolagus_cuniculus
ENSGAFG00000000010	srl	96	75.847	ENSORLG00000015064	SRL	97	75.847	Oryzias_latipes
ENSGAFG00000000010	srl	100	95.851	ENSORLG00000008291	srl	97	95.851	Oryzias_latipes
ENSGAFG00000000010	srl	96	76.072	ENSORLG00020018173	SRL	97	76.072	Oryzias_latipes_hni
ENSGAFG00000000010	srl	100	95.436	ENSORLG00020019784	srl	85	95.436	Oryzias_latipes_hni
ENSGAFG00000000010	srl	100	95.436	ENSORLG00015009342	srl	97	95.436	Oryzias_latipes_hsok
ENSGAFG00000000010	srl	96	76.072	ENSORLG00015019063	SRL	97	76.072	Oryzias_latipes_hsok
ENSGAFG00000000010	srl	100	95.436	ENSOMEG00000010006	srl	100	95.436	Oryzias_melastigma
ENSGAFG00000000010	srl	96	74.342	ENSOMEG00000005682	SRL	53	74.781	Oryzias_melastigma
ENSGAFG00000000010	srl	97	82.472	ENSOGAG00000029266	SRL	55	81.498	Otolemur_garnettii
ENSGAFG00000000010	srl	99	81.699	ENSOARG00000003074	SRL	56	83.108	Ovis_aries
ENSGAFG00000000010	srl	97	82.472	ENSPPAG00000024919	-	99	83.256	Pan_paniscus
ENSGAFG00000000010	srl	100	79.493	ENSPPRG00000010274	SRL	99	83.256	Panthera_pardus
ENSGAFG00000000010	srl	100	79.493	ENSPTIG00000015162	SRL	99	83.256	Panthera_tigris_altaica
ENSGAFG00000000010	srl	97	82.472	ENSPTRG00000007712	SRL	99	83.256	Pan_troglodytes
ENSGAFG00000000010	srl	99	80.828	ENSPANG00000013804	SRL	98	81.319	Papio_anubis
ENSGAFG00000000010	srl	100	89.506	ENSPKIG00000006405	srl	100	89.506	Paramormyrops_kingsleyae
ENSGAFG00000000010	srl	100	77.919	ENSPKIG00000024974	SRL	94	77.919	Paramormyrops_kingsleyae
ENSGAFG00000000010	srl	96	83.333	ENSPSIG00000008586	SRL	50	83.333	Pelodiscus_sinensis
ENSGAFG00000000010	srl	96	76.244	ENSPMGG00000023505	-	99	76.244	Periophthalmus_magnuspinnatus
ENSGAFG00000000010	srl	96	95.475	ENSPMGG00000021081	srl	95	95.475	Periophthalmus_magnuspinnatus
ENSGAFG00000000010	srl	97	82.921	ENSPEMG00000015842	Srl	100	80.508	Peromyscus_maniculatus_bairdii
ENSGAFG00000000010	srl	91	67.890	ENSPMAG00000004786	srl	99	68.421	Petromyzon_marinus
ENSGAFG00000000010	srl	98	82.705	ENSPCIG00000012128	SRL	98	82.705	Phascolarctos_cinereus
ENSGAFG00000000010	srl	100	99.793	ENSPFOG00000011408	srl	98	97.275	Poecilia_formosa
ENSGAFG00000000010	srl	100	99.566	ENSPLAG00000008017	srl	100	99.566	Poecilia_latipinna
ENSGAFG00000000010	srl	97	77.009	ENSPLAG00000002932	SRL	99	77.009	Poecilia_latipinna
ENSGAFG00000000010	srl	100	99.787	ENSPMEG00000006745	srl	100	99.566	Poecilia_mexicana
ENSGAFG00000000010	srl	98	75.322	ENSPMEG00000005890	SRL	61	75.162	Poecilia_mexicana
ENSGAFG00000000010	srl	97	77.902	ENSPREG00000000315	SRL	99	77.902	Poecilia_reticulata
ENSGAFG00000000010	srl	100	99.378	ENSPREG00000007751	srl	100	99.335	Poecilia_reticulata
ENSGAFG00000000010	srl	91	84.726	ENSPPYG00000007053	SRL	98	84.726	Pongo_abelii
ENSGAFG00000000010	srl	96	83.673	ENSPCAG00000003378	-	50	83.673	Procavia_capensis
ENSGAFG00000000010	srl	98	81.978	ENSPCOG00000023135	SRL	99	84.186	Propithecus_coquereli
ENSGAFG00000000010	srl	98	82.522	ENSPVAG00000006586	SRL	55	82.522	Pteropus_vampyrus
ENSGAFG00000000010	srl	100	94.617	ENSPNYG00000001200	srl	100	94.617	Pundamilia_nyererei
ENSGAFG00000000010	srl	99	74.200	ENSPNYG00000003423	SRL	58	74.624	Pundamilia_nyererei
ENSGAFG00000000010	srl	100	89.419	ENSPNAG00000023106	srl	100	89.419	Pygocentrus_nattereri
ENSGAFG00000000010	srl	99	74.837	ENSPNAG00000007361	-	95	74.837	Pygocentrus_nattereri
ENSGAFG00000000010	srl	99	81.838	ENSRNOG00000005269	Srl	51	81.838	Rattus_norvegicus
ENSGAFG00000000010	srl	96	83.032	ENSSBOG00000029273	SRL	100	79.915	Saimiri_boliviensis_boliviensis
ENSGAFG00000000010	srl	99	82.237	ENSSHAG00000011715	-	50	83.784	Sarcophilus_harrisii
ENSGAFG00000000010	srl	96	77.477	ENSSFOG00015021327	SRL	50	77.232	Scleropages_formosus
ENSGAFG00000000010	srl	100	89.256	ENSSFOG00015009773	srl	100	89.485	Scleropages_formosus
ENSGAFG00000000010	srl	100	93.418	ENSSMAG00000016274	srl	100	93.631	Scophthalmus_maximus
ENSGAFG00000000010	srl	96	75.165	ENSSMAG00000002232	SRL	50	75.165	Scophthalmus_maximus
ENSGAFG00000000010	srl	96	78.396	ENSSDUG00000009161	SRL	98	78.396	Seriola_dumerili
ENSGAFG00000000010	srl	96	96.396	ENSSDUG00000010808	srl	98	96.396	Seriola_dumerili
ENSGAFG00000000010	srl	100	95.021	ENSSLDG00000022024	srl	100	95.021	Seriola_lalandi_dorsalis
ENSGAFG00000000010	srl	96	78.118	ENSSLDG00000014601	SRL	100	78.509	Seriola_lalandi_dorsalis
ENSGAFG00000000010	srl	98	82.561	ENSSPUG00000016859	SRL	99	82.743	Sphenodon_punctatus
ENSGAFG00000000010	srl	96	79.365	ENSSPAG00000014254	SRL	98	79.545	Stegastes_partitus
ENSGAFG00000000010	srl	100	94.835	ENSSPAG00000019105	srl	100	94.835	Stegastes_partitus
ENSGAFG00000000010	srl	98	81.416	ENSSSCG00000007949	SRL	99	82.207	Sus_scrofa
ENSGAFG00000000010	srl	98	82.705	ENSTGUG00000003951	-	99	82.705	Taeniopygia_guttata
ENSGAFG00000000010	srl	79	86.740	ENSTGUG00000016121	-	100	86.740	Taeniopygia_guttata
ENSGAFG00000000010	srl	100	94.681	ENSTRUG00000006005	srl	100	94.681	Takifugu_rubripes
ENSGAFG00000000010	srl	91	78.520	ENSTRUG00000013310	SRL	55	78.333	Takifugu_rubripes
ENSGAFG00000000010	srl	100	93.830	ENSTNIG00000009739	srl	100	93.830	Tetraodon_nigroviridis
ENSGAFG00000000010	srl	98	81.498	ENSUAMG00000005701	SRL	56	81.858	Ursus_americanus
ENSGAFG00000000010	srl	98	81.498	ENSUMAG00000002574	SRL	56	81.858	Ursus_maritimus
ENSGAFG00000000010	srl	97	81.898	ENSVVUG00000016331	-	50	81.898	Vulpes_vulpes
ENSGAFG00000000010	srl	99	81.046	ENSXETG00000017313	srl	99	82.472	Xenopus_tropicalis
ENSGAFG00000000010	srl	91	98.575	ENSXCOG00000010424	srl	97	98.575	Xiphophorus_couchianus
ENSGAFG00000000010	srl	98	78.222	ENSXCOG00000014584	SRL	100	78.049	Xiphophorus_couchianus
ENSGAFG00000000010	srl	100	99.170	ENSXMAG00000004625	srl	95	99.170	Xiphophorus_maculatus
ENSGAFG00000000010	srl	98	75.536	ENSXMAG00000027598	SRL	63	75.810	Xiphophorus_maculatus