EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000000379 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 15587 bases
Position: chrNHOQ01001678.1:12765355-12780941
Accession: ZDB-GENE-081107-52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000000484	EST1	PF10374.9	7.4e-13	1	1
ENSGAFP00000000484	EST1_DNA_bind	PF10373.9	6.5e-58	1	1
ENSGAFP00000000484	PIN_4	PF13638.6	3e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000000490	-	7203	-	ENSGAFP00000000484	1620 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000000379's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000000379's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000000379	smg6	74	53.792	ENSG00000070366	SMG6	100	57.299	Homo_sapiens
ENSGAFG00000000379	smg6	100	71.945	ENSAPOG00000019448	smg6	100	72.443	Acanthochromis_polyacanthus
ENSGAFG00000000379	smg6	74	54.082	ENSAMEG00000007632	SMG6	83	53.840	Ailuropoda_melanoleuca
ENSGAFG00000000379	smg6	93	69.825	ENSACIG00000012997	smg6	100	69.974	Amphilophus_citrinellus
ENSGAFG00000000379	smg6	100	72.727	ENSAOCG00000002630	smg6	100	73.105	Amphiprion_ocellaris
ENSGAFG00000000379	smg6	100	72.486	ENSAPEG00000019101	smg6	100	72.864	Amphiprion_percula
ENSGAFG00000000379	smg6	100	69.935	ENSATEG00000006483	smg6	100	70.024	Anabas_testudineus
ENSGAFG00000000379	smg6	62	49.232	ENSACAG00000011783	SMG6	72	52.870	Anolis_carolinensis
ENSGAFG00000000379	smg6	74	54.496	ENSANAG00000035760	SMG6	83	53.997	Aotus_nancymaae
ENSGAFG00000000379	smg6	100	69.337	ENSACLG00000005288	smg6	100	70.611	Astatotilapia_calliptera
ENSGAFG00000000379	smg6	75	66.418	ENSAMXG00000017326	smg6	93	66.231	Astyanax_mexicanus
ENSGAFG00000000379	smg6	74	54.510	ENSBTAG00000000267	SMG6	83	54.317	Bos_taurus
ENSGAFG00000000379	smg6	74	54.283	ENSCJAG00000001820	SMG6	83	53.840	Callithrix_jacchus
ENSGAFG00000000379	smg6	74	54.082	ENSCAFG00000019260	SMG6	83	53.840	Canis_familiaris
ENSGAFG00000000379	smg6	74	54.082	ENSCAFG00020009770	SMG6	83	53.840	Canis_lupus_dingo
ENSGAFG00000000379	smg6	74	54.702	ENSCHIG00000021998	SMG6	83	54.196	Capra_hircus
ENSGAFG00000000379	smg6	74	53.792	ENSTSYG00000003406	SMG6	100	56.934	Carlito_syrichta
ENSGAFG00000000379	smg6	74	44.781	ENSCAPG00000016197	SMG6	81	48.655	Cavia_aperea
ENSGAFG00000000379	smg6	74	53.085	ENSCPOG00000014878	SMG6	85	58.216	Cavia_porcellus
ENSGAFG00000000379	smg6	74	54.020	ENSCCAG00000035801	SMG6	79	55.187	Cebus_capucinus
ENSGAFG00000000379	smg6	74	54.069	ENSCATG00000031956	SMG6	83	54.039	Cercocebus_atys
ENSGAFG00000000379	smg6	74	53.438	ENSCLAG00000006748	SMG6	84	57.746	Chinchilla_lanigera
ENSGAFG00000000379	smg6	74	54.304	ENSCSAG00000013800	SMG6	83	53.997	Chlorocebus_sabaeus
ENSGAFG00000000379	smg6	89	53.666	ENSCPBG00000020369	SMG6	98	53.276	Chrysemys_picta_bellii
ENSGAFG00000000379	smg6	74	54.183	ENSCANG00000031764	SMG6	100	57.664	Colobus_angolensis_palliatus
ENSGAFG00000000379	smg6	74	49.171	ENSCGRG00000007782	Smg6	80	50.582	Cricetulus_griseus_crigri
ENSGAFG00000000379	smg6	100	64.456	ENSCSEG00000012757	smg6	100	63.919	Cynoglossus_semilaevis
ENSGAFG00000000379	smg6	100	82.537	ENSCVAG00000012789	smg6	100	82.659	Cyprinodon_variegatus
ENSGAFG00000000379	smg6	100	56.005	ENSDARG00000100481	smg6	100	55.576	Danio_rerio
ENSGAFG00000000379	smg6	74	53.762	ENSDNOG00000048283	SMG6	83	53.448	Dasypus_novemcinctus
ENSGAFG00000000379	smg6	74	50.468	ENSDORG00000016614	Smg6	85	58.216	Dipodomys_ordii
ENSGAFG00000000379	smg6	62	87.500	ENSETEG00000016790	SMG6	71	87.500	Echinops_telfairi
ENSGAFG00000000379	smg6	59	48.540	ENSEBUG00000005059	smg6	61	48.540	Eptatretus_burgeri
ENSGAFG00000000379	smg6	76	52.839	ENSEASG00005009318	SMG6	86	52.719	Equus_asinus_asinus
ENSGAFG00000000379	smg6	76	52.839	ENSECAG00000006519	SMG6	86	52.719	Equus_caballus
ENSGAFG00000000379	smg6	74	46.280	ENSEEUG00000003493	SMG6	84	46.003	Erinaceus_europaeus
ENSGAFG00000000379	smg6	78	71.310	ENSELUG00000005934	smg6	94	68.258	Esox_lucius
ENSGAFG00000000379	smg6	74	53.967	ENSFCAG00000028817	SMG6	83	53.888	Felis_catus
ENSGAFG00000000379	smg6	76	53.328	ENSFALG00000006538	SMG6	88	53.175	Ficedula_albicollis
ENSGAFG00000000379	smg6	74	53.660	ENSFDAG00000015106	SMG6	84	57.277	Fukomys_damarensis
ENSGAFG00000000379	smg6	100	84.828	ENSFHEG00000013282	smg6	100	85.749	Fundulus_heteroclitus
ENSGAFG00000000379	smg6	77	53.139	ENSGALG00000003108	SMG6	84	53.216	Gallus_gallus
ENSGAFG00000000379	smg6	90	69.549	ENSGACG00000020521	smg6	100	68.868	Gasterosteus_aculeatus
ENSGAFG00000000379	smg6	74	54.140	ENSGAGG00000025617	SMG6	84	53.742	Gopherus_agassizii
ENSGAFG00000000379	smg6	74	54.183	ENSGGOG00000017156	SMG6	83	53.840	Gorilla_gorilla
ENSGAFG00000000379	smg6	100	68.787	ENSHBUG00000021311	smg6	100	69.874	Haplochromis_burtoni
ENSGAFG00000000379	smg6	74	53.750	ENSHGLG00000012882	SMG6	84	58.216	Heterocephalus_glaber_female
ENSGAFG00000000379	smg6	74	53.385	ENSHGLG00100017815	SMG6	84	58.216	Heterocephalus_glaber_male
ENSGAFG00000000379	smg6	65	68.709	ENSHCOG00000008761	smg6	83	67.817	Hippocampus_comes
ENSGAFG00000000379	smg6	100	53.164	ENSIPUG00000012493	smg6	100	52.816	Ictalurus_punctatus
ENSGAFG00000000379	smg6	74	54.094	ENSSTOG00000028127	SMG6	85	57.277	Ictidomys_tridecemlineatus
ENSGAFG00000000379	smg6	54	50.738	ENSJJAG00000015367	Smg6	76	48.744	Jaculus_jaculus
ENSGAFG00000000379	smg6	100	74.460	ENSKMAG00000000279	smg6	100	74.596	Kryptolebias_marmoratus
ENSGAFG00000000379	smg6	100	68.709	ENSLBEG00000002184	smg6	100	68.925	Labrus_bergylta
ENSGAFG00000000379	smg6	74	53.412	ENSLAFG00000001261	SMG6	83	53.171	Loxodonta_africana
ENSGAFG00000000379	smg6	74	54.304	ENSMFAG00000003394	SMG6	83	53.997	Macaca_fascicularis
ENSGAFG00000000379	smg6	74	54.225	ENSMMUG00000023161	SMG6	83	53.997	Macaca_mulatta
ENSGAFG00000000379	smg6	74	51.759	ENSMNEG00000044592	SMG6	83	51.527	Macaca_nemestrina
ENSGAFG00000000379	smg6	70	58.609	ENSMLEG00000029353	SMG6	84	58.783	Mandrillus_leucophaeus
ENSGAFG00000000379	smg6	100	69.516	ENSMAMG00000020119	smg6	100	70.637	Mastacembelus_armatus
ENSGAFG00000000379	smg6	100	69.097	ENSMZEG00005024736	smg6	100	69.785	Maylandia_zebra
ENSGAFG00000000379	smg6	53	50.221	ENSMGAG00000005401	-	81	50.717	Meleagris_gallopavo
ENSGAFG00000000379	smg6	74	54.225	ENSMICG00000012913	SMG6	83	53.882	Microcebus_murinus
ENSGAFG00000000379	smg6	100	63.401	ENSMMOG00000010883	smg6	100	63.385	Mola_mola
ENSGAFG00000000379	smg6	74	54.538	ENSMODG00000010622	SMG6	83	54.437	Monodelphis_domestica
ENSGAFG00000000379	smg6	100	68.085	ENSMALG00000001106	smg6	100	69.048	Monopterus_albus
ENSGAFG00000000379	smg6	74	53.532	MGP_CAROLIEiJ_G0016729	Smg6	87	69.206	Mus_caroli
ENSGAFG00000000379	smg6	74	53.485	ENSMUSG00000038290	Smg6	87	68.889	Mus_musculus
ENSGAFG00000000379	smg6	74	53.297	MGP_PahariEiJ_G0017866	Smg6	87	68.571	Mus_pahari
ENSGAFG00000000379	smg6	74	53.406	MGP_SPRETEiJ_G0017572	Smg6	87	68.571	Mus_spretus
ENSGAFG00000000379	smg6	74	54.346	ENSMPUG00000013046	SMG6	83	53.997	Mustela_putorius_furo
ENSGAFG00000000379	smg6	74	54.538	ENSMLUG00000005739	SMG6	83	54.265	Myotis_lucifugus
ENSGAFG00000000379	smg6	74	53.749	ENSNGAG00000007287	Smg6	91	54.310	Nannospalax_galili
ENSGAFG00000000379	smg6	97	67.569	ENSNBRG00000009511	smg6	99	69.195	Neolamprologus_brichardi
ENSGAFG00000000379	smg6	74	54.396	ENSNLEG00000017171	SMG6	100	57.299	Nomascus_leucogenys
ENSGAFG00000000379	smg6	77	53.550	ENSMEUG00000015804	SMG6	88	53.405	Notamacropus_eugenii
ENSGAFG00000000379	smg6	51	62.827	ENSOPRG00000000579	SMG6	79	63.021	Ochotona_princeps
ENSGAFG00000000379	smg6	74	47.922	ENSODEG00000008038	SMG6	94	46.519	Octodon_degus
ENSGAFG00000000379	smg6	100	68.884	ENSONIG00000005594	smg6	99	75.058	Oreochromis_niloticus
ENSGAFG00000000379	smg6	74	53.876	ENSOCUG00000013018	SMG6	83	53.628	Oryctolagus_cuniculus
ENSGAFG00000000379	smg6	100	66.566	ENSORLG00000003317	smg6	100	67.168	Oryzias_latipes
ENSGAFG00000000379	smg6	100	66.707	ENSORLG00020015343	smg6	100	66.948	Oryzias_latipes_hni
ENSGAFG00000000379	smg6	100	66.907	ENSORLG00015020454	smg6	100	67.509	Oryzias_latipes_hsok
ENSGAFG00000000379	smg6	100	67.654	ENSOMEG00000010838	smg6	100	68.135	Oryzias_melastigma
ENSGAFG00000000379	smg6	74	54.176	ENSOGAG00000004483	SMG6	83	53.918	Otolemur_garnettii
ENSGAFG00000000379	smg6	74	54.702	ENSOARG00000015076	SMG6	85	54.239	Ovis_aries
ENSGAFG00000000379	smg6	74	54.141	ENSPPAG00000043296	SMG6	83	53.683	Pan_paniscus
ENSGAFG00000000379	smg6	74	53.967	ENSPPRG00000014581	SMG6	83	53.888	Panthera_pardus
ENSGAFG00000000379	smg6	74	53.967	ENSPTIG00000008925	SMG6	100	57.636	Panthera_tigris_altaica
ENSGAFG00000000379	smg6	74	54.062	ENSPTRG00000008544	SMG6	100	57.299	Pan_troglodytes
ENSGAFG00000000379	smg6	74	54.225	ENSPANG00000024588	SMG6	83	53.997	Papio_anubis
ENSGAFG00000000379	smg6	66	52.502	ENSPSIG00000006660	SMG6	82	51.965	Pelodiscus_sinensis
ENSGAFG00000000379	smg6	94	78.019	ENSPMGG00000000844	smg6	99	77.748	Periophthalmus_magnuspinnatus
ENSGAFG00000000379	smg6	74	54.160	ENSPEMG00000020707	Smg6	86	57.746	Peromyscus_maniculatus_bairdii
ENSGAFG00000000379	smg6	100	94.139	ENSPFOG00000012035	smg6	100	94.263	Poecilia_formosa
ENSGAFG00000000379	smg6	100	94.324	ENSPLAG00000017660	smg6	100	94.324	Poecilia_latipinna
ENSGAFG00000000379	smg6	100	94.263	ENSPMEG00000000258	smg6	100	94.386	Poecilia_mexicana
ENSGAFG00000000379	smg6	100	93.831	ENSPREG00000010066	smg6	100	93.831	Poecilia_reticulata
ENSGAFG00000000379	smg6	74	50.078	ENSPPYG00000007790	SMG6	79	51.151	Pongo_abelii
ENSGAFG00000000379	smg6	70	58.957	ENSPCAG00000000552	SMG6	83	50.824	Procavia_capensis
ENSGAFG00000000379	smg6	74	53.948	ENSPCOG00000020925	SMG6	83	53.683	Propithecus_coquereli
ENSGAFG00000000379	smg6	70	61.529	ENSPVAG00000002159	SMG6	79	51.535	Pteropus_vampyrus
ENSGAFG00000000379	smg6	93	65.793	ENSPNYG00000024151	smg6	99	69.063	Pundamilia_nyererei
ENSGAFG00000000379	smg6	84	72.222	ENSPNAG00000015480	smg6	98	70.957	Pygocentrus_nattereri
ENSGAFG00000000379	smg6	74	53.569	ENSRNOG00000003041	Smg6	87	69.524	Rattus_norvegicus
ENSGAFG00000000379	smg6	74	54.261	ENSRBIG00000024746	SMG6	83	53.997	Rhinopithecus_bieti
ENSGAFG00000000379	smg6	74	54.339	ENSRROG00000030423	SMG6	100	57.664	Rhinopithecus_roxellana
ENSGAFG00000000379	smg6	74	54.176	ENSSBOG00000022518	SMG6	83	52.273	Saimiri_boliviensis_boliviensis
ENSGAFG00000000379	smg6	74	54.957	ENSSHAG00000010045	SMG6	83	54.288	Sarcophilus_harrisii
ENSGAFG00000000379	smg6	95	54.557	ENSSFOG00015005436	smg6	91	55.058	Scleropages_formosus
ENSGAFG00000000379	smg6	100	69.244	ENSSMAG00000019777	smg6	100	68.381	Scophthalmus_maximus
ENSGAFG00000000379	smg6	100	72.169	ENSSDUG00000016412	smg6	100	72.706	Seriola_dumerili
ENSGAFG00000000379	smg6	91	72.477	ENSSLDG00000020747	smg6	98	72.870	Seriola_lalandi_dorsalis
ENSGAFG00000000379	smg6	89	54.408	ENSSPUG00000007152	SMG6	98	53.614	Sphenodon_punctatus
ENSGAFG00000000379	smg6	100	72.262	ENSSPAG00000015633	smg6	100	72.700	Stegastes_partitus
ENSGAFG00000000379	smg6	74	54.317	ENSSSCG00000017826	SMG6	83	54.046	Sus_scrofa
ENSGAFG00000000379	smg6	76	53.232	ENSTGUG00000005836	SMG6	87	52.829	Taeniopygia_guttata
ENSGAFG00000000379	smg6	93	63.607	ENSTRUG00000000358	smg6	98	63.952	Takifugu_rubripes
ENSGAFG00000000379	smg6	91	73.412	ENSTNIG00000016164	smg6	100	72.031	Tetraodon_nigroviridis
ENSGAFG00000000379	smg6	74	51.377	ENSTBEG00000011424	SMG6	72	55.201	Tupaia_belangeri
ENSGAFG00000000379	smg6	66	55.824	ENSTTRG00000001175	SMG6	74	55.966	Tursiops_truncatus
ENSGAFG00000000379	smg6	74	54.020	ENSUAMG00000025152	SMG6	85	53.678	Ursus_americanus
ENSGAFG00000000379	smg6	74	54.082	ENSUMAG00000009306	SMG6	85	53.840	Ursus_maritimus
ENSGAFG00000000379	smg6	60	95.833	ENSVPAG00000000225	SMG6	70	95.833	Vicugna_pacos
ENSGAFG00000000379	smg6	74	54.699	ENSVVUG00000021727	SMG6	84	54.451	Vulpes_vulpes
ENSGAFG00000000379	smg6	66	54.471	ENSXETG00000023799	SMG6	75	53.591	Xenopus_tropicalis
ENSGAFG00000000379	smg6	98	91.012	ENSXCOG00000009867	smg6	99	91.640	Xiphophorus_couchianus
ENSGAFG00000000379	smg6	100	95.373	ENSXMAG00000010321	smg6	100	95.373	Xiphophorus_maculatus