EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000000704 (Gene tree)
Gene ID: -
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b%2C subunit 1
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 15414 bases
Position: chrNHOQ01002941.1:5049-20462
Accession: ZDB-GENE-040827-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000001165	SF3b1	PF08920.10	9.2e-48	1	1
ENSGAFP00000001157	SF3b1	PF08920.10	4.5e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000001180	-	4910	-	ENSGAFP00000001165	1295 (aa)	-	-
ENSGAFT00000001172	-	3921	-	ENSGAFP00000001157	1306 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000000704's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000000704's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000000704	sf3b1	99	93.441	ENSG00000115524	SF3B1	100	91.915	Homo_sapiens
ENSGAFG00000000704	sf3b1	100	98.457	ENSAPOG00000011894	sf3b1	98	98.457	Acanthochromis_polyacanthus
ENSGAFG00000000704	sf3b1	99	93.369	ENSAMEG00000013809	SF3B1	98	93.369	Ailuropoda_melanoleuca
ENSGAFG00000000704	sf3b1	100	97.529	ENSACIG00000020910	sf3b1	97	95.957	Amphilophus_citrinellus
ENSGAFG00000000704	sf3b1	100	98.457	ENSAOCG00000004478	sf3b1	98	98.457	Amphiprion_ocellaris
ENSGAFG00000000704	sf3b1	100	98.457	ENSAPEG00000012937	sf3b1	98	98.457	Amphiprion_percula
ENSGAFG00000000704	sf3b1	100	98.533	ENSATEG00000020435	sf3b1	98	98.607	Anabas_testudineus
ENSGAFG00000000704	sf3b1	99	94.315	ENSAPLG00000003993	SF3B1	98	94.315	Anas_platyrhynchos
ENSGAFG00000000704	sf3b1	99	93.591	ENSACAG00000009612	SF3B1	100	91.985	Anolis_carolinensis
ENSGAFG00000000704	sf3b1	99	93.441	ENSANAG00000021577	SF3B1	100	94.692	Aotus_nancymaae
ENSGAFG00000000704	sf3b1	100	97.375	ENSACLG00000023470	sf3b1	98	97.375	Astatotilapia_calliptera
ENSGAFG00000000704	sf3b1	100	96.839	ENSAMXG00000002219	sf3b1	98	96.839	Astyanax_mexicanus
ENSGAFG00000000704	sf3b1	99	93.441	ENSBTAG00000008915	SF3B1	100	91.915	Bos_taurus
ENSGAFG00000000704	sf3b1	99	64.693	WBGene00011605	sftb-1	98	64.841	Caenorhabditis_elegans
ENSGAFG00000000704	sf3b1	99	93.441	ENSCJAG00000003902	SF3B1	100	91.915	Callithrix_jacchus
ENSGAFG00000000704	sf3b1	99	93.441	ENSCAFG00000010826	SF3B1	100	91.915	Canis_familiaris
ENSGAFG00000000704	sf3b1	99	93.441	ENSCAFG00020004750	SF3B1	100	91.915	Canis_lupus_dingo
ENSGAFG00000000704	sf3b1	99	93.441	ENSCHIG00000015226	SF3B1	99	93.441	Capra_hircus
ENSGAFG00000000704	sf3b1	99	93.364	ENSTSYG00000009214	SF3B1	100	91.838	Carlito_syrichta
ENSGAFG00000000704	sf3b1	99	93.441	ENSCAPG00000006547	SF3B1	98	93.441	Cavia_aperea
ENSGAFG00000000704	sf3b1	99	93.441	ENSCPOG00000009353	SF3B1	99	93.441	Cavia_porcellus
ENSGAFG00000000704	sf3b1	99	93.441	ENSCCAG00000020506	SF3B1	100	91.915	Cebus_capucinus
ENSGAFG00000000704	sf3b1	99	93.441	ENSCATG00000035735	SF3B1	100	91.915	Cercocebus_atys
ENSGAFG00000000704	sf3b1	99	93.441	ENSCLAG00000014767	SF3B1	98	93.441	Chinchilla_lanigera
ENSGAFG00000000704	sf3b1	99	93.441	ENSCSAG00000011505	SF3B1	100	91.915	Chlorocebus_sabaeus
ENSGAFG00000000704	sf3b1	75	92.360	ENSCHOG00000009860	SF3B1	74	92.360	Choloepus_hoffmanni
ENSGAFG00000000704	sf3b1	99	93.740	ENSCPBG00000021902	SF3B1	99	94.781	Chrysemys_picta_bellii
ENSGAFG00000000704	sf3b1	69	78.408	ENSCING00000002558	-	99	78.848	Ciona_intestinalis
ENSGAFG00000000704	sf3b1	99	81.029	ENSCSAVG00000002559	-	98	81.029	Ciona_savignyi
ENSGAFG00000000704	sf3b1	99	93.441	ENSCANG00000029415	SF3B1	100	91.915	Colobus_angolensis_palliatus
ENSGAFG00000000704	sf3b1	99	93.441	ENSCGRG00001016990	Sf3b1	100	91.915	Cricetulus_griseus_chok1gshd
ENSGAFG00000000704	sf3b1	99	93.441	ENSCGRG00000005301	Sf3b1	100	91.915	Cricetulus_griseus_crigri
ENSGAFG00000000704	sf3b1	100	94.054	ENSCSEG00000003860	sf3b1	100	92.449	Cynoglossus_semilaevis
ENSGAFG00000000704	sf3b1	96	99.517	ENSCVAG00000003680	sf3b1	98	99.517	Cyprinodon_variegatus
ENSGAFG00000000704	sf3b1	99	96.291	ENSDARG00000056138	sf3b1	98	96.291	Danio_rerio
ENSGAFG00000000704	sf3b1	99	93.369	ENSDNOG00000011754	SF3B1	100	91.845	Dasypus_novemcinctus
ENSGAFG00000000704	sf3b1	99	91.506	ENSDORG00000002399	Sf3b1	99	91.429	Dipodomys_ordii
ENSGAFG00000000704	sf3b1	99	76.484	FBgn0031266	Sf3b1	98	76.484	Drosophila_melanogaster
ENSGAFG00000000704	sf3b1	83	92.315	ENSETEG00000009188	SF3B1	99	92.315	Echinops_telfairi
ENSGAFG00000000704	sf3b1	99	85.901	ENSEBUG00000004325	sf3b1	100	88.458	Eptatretus_burgeri
ENSGAFG00000000704	sf3b1	99	93.441	ENSEASG00005020159	SF3B1	98	91.915	Equus_asinus_asinus
ENSGAFG00000000704	sf3b1	99	93.441	ENSECAG00000021657	SF3B1	98	91.915	Equus_caballus
ENSGAFG00000000704	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSGAFG00000000704	sf3b1	100	96.166	ENSELUG00000005977	sf3b1	97	96.166	Esox_lucius
ENSGAFG00000000704	sf3b1	99	93.441	ENSFCAG00000005038	SF3B1	100	91.915	Felis_catus
ENSGAFG00000000704	sf3b1	99	94.237	ENSFALG00000004281	SF3B1	98	94.237	Ficedula_albicollis
ENSGAFG00000000704	sf3b1	99	93.441	ENSFDAG00000017510	SF3B1	100	91.915	Fukomys_damarensis
ENSGAFG00000000704	sf3b1	100	98.224	ENSFHEG00000014333	sf3b1	98	98.224	Fundulus_heteroclitus
ENSGAFG00000000704	sf3b1	100	95.378	ENSGMOG00000006773	sf3b1	100	94.368	Gadus_morhua
ENSGAFG00000000704	sf3b1	99	94.315	ENSGALG00000008038	SF3B1	98	94.315	Gallus_gallus
ENSGAFG00000000704	sf3b1	100	97.147	ENSGACG00000008839	sf3b1	100	95.506	Gasterosteus_aculeatus
ENSGAFG00000000704	sf3b1	99	93.740	ENSGAGG00000017478	SF3B1	98	93.740	Gopherus_agassizii
ENSGAFG00000000704	sf3b1	99	88.108	ENSGGOG00000009264	SF3B1	99	88.185	Gorilla_gorilla
ENSGAFG00000000704	sf3b1	99	97.448	ENSHBUG00000007705	sf3b1	98	97.448	Haplochromis_burtoni
ENSGAFG00000000704	sf3b1	99	93.441	ENSHGLG00000008285	-	98	93.441	Heterocephalus_glaber_female
ENSGAFG00000000704	sf3b1	99	91.435	ENSHGLG00100005535	-	98	91.435	Heterocephalus_glaber_male
ENSGAFG00000000704	sf3b1	100	97.389	ENSHCOG00000016775	sf3b1	98	97.389	Hippocampus_comes
ENSGAFG00000000704	sf3b1	100	96.759	ENSIPUG00000013171	sf3b1	100	94.833	Ictalurus_punctatus
ENSGAFG00000000704	sf3b1	99	93.441	ENSSTOG00000011034	SF3B1	100	91.915	Ictidomys_tridecemlineatus
ENSGAFG00000000704	sf3b1	99	93.441	ENSJJAG00000010903	Sf3b1	99	93.441	Jaculus_jaculus
ENSGAFG00000000704	sf3b1	100	97.844	ENSKMAG00000004009	sf3b1	98	97.844	Kryptolebias_marmoratus
ENSGAFG00000000704	sf3b1	100	97.066	ENSLBEG00000022208	sf3b1	100	95.798	Labrus_bergylta
ENSGAFG00000000704	sf3b1	99	90.345	ENSLACG00000014832	SF3B1	98	90.421	Latimeria_chalumnae
ENSGAFG00000000704	sf3b1	100	95.238	ENSLOCG00000003899	sf3b1	100	93.627	Lepisosteus_oculatus
ENSGAFG00000000704	sf3b1	99	93.441	ENSLAFG00000001956	SF3B1	99	93.369	Loxodonta_africana
ENSGAFG00000000704	sf3b1	99	93.441	ENSMMUG00000022430	SF3B1	98	93.441	Macaca_mulatta
ENSGAFG00000000704	sf3b1	99	93.441	ENSMNEG00000042333	SF3B1	100	94.692	Macaca_nemestrina
ENSGAFG00000000704	sf3b1	96	88.638	ENSMLEG00000026141	SF3B1	98	89.185	Mandrillus_leucophaeus
ENSGAFG00000000704	sf3b1	100	98.301	ENSMAMG00000010241	sf3b1	98	98.301	Mastacembelus_armatus
ENSGAFG00000000704	sf3b1	100	97.375	ENSMZEG00005021254	sf3b1	98	97.375	Maylandia_zebra
ENSGAFG00000000704	sf3b1	99	93.692	ENSMGAG00000007017	SF3B1	98	93.692	Meleagris_gallopavo
ENSGAFG00000000704	sf3b1	99	89.198	ENSMAUG00000009071	Sf3b1	98	89.198	Mesocricetus_auratus
ENSGAFG00000000704	sf3b1	99	93.441	ENSMICG00000013879	SF3B1	99	93.441	Microcebus_murinus
ENSGAFG00000000704	sf3b1	99	89.198	ENSMOCG00000000455	Sf3b1	99	89.198	Microtus_ochrogaster
ENSGAFG00000000704	sf3b1	83	97.870	ENSMMOG00000000475	sf3b1	100	96.252	Mola_mola
ENSGAFG00000000704	sf3b1	99	92.978	ENSMODG00000012275	SF3B1	100	91.457	Monodelphis_domestica
ENSGAFG00000000704	sf3b1	100	98.224	ENSMALG00000017211	sf3b1	98	98.224	Monopterus_albus
ENSGAFG00000000704	sf3b1	99	93.441	MGP_CAROLIEiJ_G0014141	Sf3b1	100	91.915	Mus_caroli
ENSGAFG00000000704	sf3b1	99	93.441	ENSMUSG00000025982	Sf3b1	100	91.915	Mus_musculus
ENSGAFG00000000704	sf3b1	99	93.441	MGP_SPRETEiJ_G0014947	Sf3b1	100	91.915	Mus_spretus
ENSGAFG00000000704	sf3b1	99	93.441	ENSMPUG00000007799	SF3B1	100	91.915	Mustela_putorius_furo
ENSGAFG00000000704	sf3b1	99	92.284	ENSMLUG00000000840	SF3B1	100	90.770	Myotis_lucifugus
ENSGAFG00000000704	sf3b1	99	93.441	ENSNGAG00000021884	-	99	93.441	Nannospalax_galili
ENSGAFG00000000704	sf3b1	100	92.450	ENSNBRG00000015816	sf3b1	100	90.854	Neolamprologus_brichardi
ENSGAFG00000000704	sf3b1	99	93.441	ENSNLEG00000006861	SF3B1	99	93.441	Nomascus_leucogenys
ENSGAFG00000000704	sf3b1	70	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSGAFG00000000704	sf3b1	99	80.755	ENSOPRG00000008596	SF3B1	100	79.462	Ochotona_princeps
ENSGAFG00000000704	sf3b1	99	93.441	ENSODEG00000011153	-	100	91.915	Octodon_degus
ENSGAFG00000000704	sf3b1	100	97.375	ENSONIG00000013758	sf3b1	98	97.375	Oreochromis_niloticus
ENSGAFG00000000704	sf3b1	84	95.325	ENSOCUG00000012722	-	96	95.325	Oryctolagus_cuniculus
ENSGAFG00000000704	sf3b1	100	97.992	ENSORLG00000020219	sf3b1	98	97.992	Oryzias_latipes
ENSGAFG00000000704	sf3b1	100	97.992	ENSORLG00020001746	sf3b1	98	97.992	Oryzias_latipes_hni
ENSGAFG00000000704	sf3b1	64	96.481	ENSORLG00015001759	sf3b1	96	96.481	Oryzias_latipes_hsok
ENSGAFG00000000704	sf3b1	100	98.224	ENSOMEG00000019231	sf3b1	98	98.224	Oryzias_melastigma
ENSGAFG00000000704	sf3b1	99	93.441	ENSOARG00000015374	SF3B1	100	91.915	Ovis_aries
ENSGAFG00000000704	sf3b1	99	93.441	ENSPPAG00000035007	SF3B1	99	93.441	Pan_paniscus
ENSGAFG00000000704	sf3b1	99	93.441	ENSPPRG00000009090	SF3B1	100	91.915	Panthera_pardus
ENSGAFG00000000704	sf3b1	99	93.441	ENSPTIG00000021557	SF3B1	100	91.915	Panthera_tigris_altaica
ENSGAFG00000000704	sf3b1	99	86.220	ENSPTRG00000012771	SF3B1	99	86.220	Pan_troglodytes
ENSGAFG00000000704	sf3b1	99	93.441	ENSPANG00000013417	SF3B1	100	91.915	Papio_anubis
ENSGAFG00000000704	sf3b1	99	95.988	ENSPKIG00000000784	sf3b1	98	95.988	Paramormyrops_kingsleyae
ENSGAFG00000000704	sf3b1	99	92.581	ENSPSIG00000017222	SF3B1	98	92.581	Pelodiscus_sinensis
ENSGAFG00000000704	sf3b1	90	97.521	ENSPMGG00000004330	sf3b1	99	96.034	Periophthalmus_magnuspinnatus
ENSGAFG00000000704	sf3b1	99	93.441	ENSPEMG00000010699	Sf3b1	99	93.441	Peromyscus_maniculatus_bairdii
ENSGAFG00000000704	sf3b1	99	89.490	ENSPMAG00000001311	sf3b1	98	89.799	Petromyzon_marinus
ENSGAFG00000000704	sf3b1	99	92.978	ENSPCIG00000010642	SF3B1	100	91.457	Phascolarctos_cinereus
ENSGAFG00000000704	sf3b1	100	99.614	ENSPFOG00000000073	sf3b1	98	99.614	Poecilia_formosa
ENSGAFG00000000704	sf3b1	100	99.614	ENSPLAG00000002293	sf3b1	98	99.614	Poecilia_latipinna
ENSGAFG00000000704	sf3b1	100	99.691	ENSPMEG00000000446	sf3b1	96	99.691	Poecilia_mexicana
ENSGAFG00000000704	sf3b1	100	99.691	ENSPREG00000019652	sf3b1	98	99.691	Poecilia_reticulata
ENSGAFG00000000704	sf3b1	84	96.676	ENSPPYG00000013044	SF3B1	95	96.676	Pongo_abelii
ENSGAFG00000000704	sf3b1	99	93.287	ENSPCAG00000009292	SF3B1	100	91.762	Procavia_capensis
ENSGAFG00000000704	sf3b1	99	93.441	ENSPCOG00000024074	SF3B1	100	91.915	Propithecus_coquereli
ENSGAFG00000000704	sf3b1	99	93.441	ENSPVAG00000008302	SF3B1	100	91.915	Pteropus_vampyrus
ENSGAFG00000000704	sf3b1	100	97.375	ENSPNYG00000014939	sf3b1	98	97.375	Pundamilia_nyererei
ENSGAFG00000000704	sf3b1	100	96.916	ENSPNAG00000008288	sf3b1	98	96.916	Pygocentrus_nattereri
ENSGAFG00000000704	sf3b1	99	93.441	ENSRNOG00000013516	Sf3b1	100	91.915	Rattus_norvegicus
ENSGAFG00000000704	sf3b1	99	89.892	ENSRBIG00000026096	SF3B1	99	89.892	Rhinopithecus_bieti
ENSGAFG00000000704	sf3b1	99	93.441	ENSRROG00000031308	SF3B1	99	93.441	Rhinopithecus_roxellana
ENSGAFG00000000704	sf3b1	99	93.441	ENSSBOG00000020080	SF3B1	100	91.915	Saimiri_boliviensis_boliviensis
ENSGAFG00000000704	sf3b1	99	92.984	ENSSHAG00000017564	SF3B1	100	91.457	Sarcophilus_harrisii
ENSGAFG00000000704	sf3b1	100	96.296	ENSSFOG00015021535	sf3b1	100	94.301	Scleropages_formosus
ENSGAFG00000000704	sf3b1	99	97.381	ENSSMAG00000013977	sf3b1	99	95.448	Scophthalmus_maximus
ENSGAFG00000000704	sf3b1	100	98.456	ENSSDUG00000017422	sf3b1	98	98.456	Seriola_dumerili
ENSGAFG00000000704	sf3b1	100	98.533	ENSSLDG00000019495	sf3b1	98	98.533	Seriola_lalandi_dorsalis
ENSGAFG00000000704	sf3b1	76	98.592	ENSSARG00000007016	SF3B1	75	98.592	Sorex_araneus
ENSGAFG00000000704	sf3b1	99	93.431	ENSSPUG00000000410	SF3B1	100	91.902	Sphenodon_punctatus
ENSGAFG00000000704	sf3b1	100	98.301	ENSSPAG00000010451	sf3b1	97	98.301	Stegastes_partitus
ENSGAFG00000000704	sf3b1	90	94.692	ENSSSCG00000016075	SF3B1	100	94.692	Sus_scrofa
ENSGAFG00000000704	sf3b1	99	94.315	ENSTGUG00000010553	SF3B1	98	94.315	Taeniopygia_guttata
ENSGAFG00000000704	sf3b1	99	97.991	ENSTRUG00000015534	sf3b1	98	97.991	Takifugu_rubripes
ENSGAFG00000000704	sf3b1	84	96.901	ENSTBEG00000008714	SF3B1	91	96.901	Tupaia_belangeri
ENSGAFG00000000704	sf3b1	92	93.173	ENSTTRG00000003414	SF3B1	91	93.173	Tursiops_truncatus
ENSGAFG00000000704	sf3b1	94	83.609	ENSUAMG00000018506	SF3B1	99	97.571	Ursus_americanus
ENSGAFG00000000704	sf3b1	99	93.441	ENSUMAG00000020945	SF3B1	100	91.915	Ursus_maritimus
ENSGAFG00000000704	sf3b1	95	93.171	ENSVPAG00000005798	SF3B1	94	93.171	Vicugna_pacos
ENSGAFG00000000704	sf3b1	99	93.441	ENSVVUG00000025948	SF3B1	95	91.915	Vulpes_vulpes
ENSGAFG00000000704	sf3b1	99	92.607	ENSXETG00000013339	sf3b1	100	90.923	Xenopus_tropicalis
ENSGAFG00000000704	sf3b1	100	96.713	ENSXCOG00000018086	sf3b1	100	97.018	Xiphophorus_couchianus
ENSGAFG00000000704	sf3b1	100	99.691	ENSXMAG00000007369	sf3b1	100	99.465	Xiphophorus_maculatus