EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000000829 (Gene tree)
Gene ID: -
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 7514 bases
Position: chrNHOQ01002284.1:7580982-7588495
Accession: ZDB-GENE-040426-1630
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000001166	Smg4_UPF3	PF03467.15	5.6e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000001181	-	3508	-	ENSGAFP00000001166	453 (aa)	-	UPI000DD18C6E

Gene Model

Click here to download ENSGAFG00000000829's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000000829's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000000829	upf3b	96	55.098	ENSG00000125351	UPF3B	96	65.550	Homo_sapiens
ENSGAFG00000000829	upf3b	88	43.627	ENSG00000169062	UPF3A	82	41.832	Homo_sapiens
ENSGAFG00000000829	upf3b	100	81.223	ENSAPOG00000012775	upf3b	100	80.568	Acanthochromis_polyacanthus
ENSGAFG00000000829	upf3b	96	55.824	ENSAMEG00000000163	UPF3B	96	54.846	Ailuropoda_melanoleuca
ENSGAFG00000000829	upf3b	100	73.491	ENSACIG00000013582	upf3b	100	74.569	Amphilophus_citrinellus
ENSGAFG00000000829	upf3b	100	79.694	ENSAOCG00000000706	upf3b	100	79.039	Amphiprion_ocellaris
ENSGAFG00000000829	upf3b	100	81.004	ENSAPEG00000005545	upf3b	100	80.568	Amphiprion_percula
ENSGAFG00000000829	upf3b	100	78.664	ENSATEG00000018742	upf3b	100	79.310	Anabas_testudineus
ENSGAFG00000000829	upf3b	94	59.594	ENSACAG00000003625	UPF3B	94	57.466	Anolis_carolinensis
ENSGAFG00000000829	upf3b	89	48.193	ENSACAG00000001540	UPF3A	98	44.286	Anolis_carolinensis
ENSGAFG00000000829	upf3b	100	50.943	ENSANAG00000025598	-	98	48.812	Aotus_nancymaae
ENSGAFG00000000829	upf3b	96	55.799	ENSANAG00000021894	-	97	65.550	Aotus_nancymaae
ENSGAFG00000000829	upf3b	100	78.696	ENSACLG00000001649	upf3b	100	78.043	Astatotilapia_calliptera
ENSGAFG00000000829	upf3b	57	78.846	ENSAMXG00000000199	upf3b	88	80.749	Astyanax_mexicanus
ENSGAFG00000000829	upf3b	57	65.455	ENSBTAG00000035615	UPF3B	91	65.550	Bos_taurus
ENSGAFG00000000829	upf3b	96	55.604	ENSCJAG00000004975	UPF3B	97	65.072	Callithrix_jacchus
ENSGAFG00000000829	upf3b	96	53.813	ENSCAFG00000018426	UPF3B	98	53.084	Canis_familiaris
ENSGAFG00000000829	upf3b	96	51.852	ENSCAFG00020004074	UPF3B	96	50.881	Canis_lupus_dingo
ENSGAFG00000000829	upf3b	96	54.255	ENSCHIG00000000247	-	96	53.105	Capra_hircus
ENSGAFG00000000829	upf3b	96	54.043	ENSCHIG00000018011	-	88	55.263	Capra_hircus
ENSGAFG00000000829	upf3b	96	55.580	ENSTSYG00000014690	UPF3B	96	59.535	Carlito_syrichta
ENSGAFG00000000829	upf3b	93	38.444	ENSCCAG00000029813	-	51	59.740	Cebus_capucinus
ENSGAFG00000000829	upf3b	96	55.098	ENSCATG00000017506	UPF3B	97	65.550	Cercocebus_atys
ENSGAFG00000000829	upf3b	96	56.484	ENSCLAG00000003260	UPF3B	96	55.727	Chinchilla_lanigera
ENSGAFG00000000829	upf3b	96	53.586	ENSCSAG00000018348	UPF3B	96	53.105	Chlorocebus_sabaeus
ENSGAFG00000000829	upf3b	94	57.596	ENSCPBG00000020685	UPF3B	99	54.936	Chrysemys_picta_bellii
ENSGAFG00000000829	upf3b	57	65.201	ENSCANG00000029220	UPF3B	65	65.550	Colobus_angolensis_palliatus
ENSGAFG00000000829	upf3b	75	53.652	ENSCGRG00001013643	-	79	61.092	Cricetulus_griseus_chok1gshd
ENSGAFG00000000829	upf3b	94	54.305	ENSCGRG00001006858	-	84	56.171	Cricetulus_griseus_chok1gshd
ENSGAFG00000000829	upf3b	86	58.000	ENSCGRG00000007627	Upf3b	93	55.980	Cricetulus_griseus_crigri
ENSGAFG00000000829	upf3b	89	51.951	ENSCSEG00000005106	upf3a	83	46.305	Cynoglossus_semilaevis
ENSGAFG00000000829	upf3b	99	74.686	ENSCSEG00000002046	upf3b	99	75.523	Cynoglossus_semilaevis
ENSGAFG00000000829	upf3b	100	88.816	ENSCVAG00000005030	upf3b	100	88.816	Cyprinodon_variegatus
ENSGAFG00000000829	upf3b	94	70.481	ENSDARG00000000489	upf3b	100	66.311	Danio_rerio
ENSGAFG00000000829	upf3b	88	51.095	ENSDARG00000069297	upf3a	84	46.929	Danio_rerio
ENSGAFG00000000829	upf3b	96	53.632	ENSDNOG00000008665	UPF3B	96	52.677	Dasypus_novemcinctus
ENSGAFG00000000829	upf3b	96	55.165	ENSDORG00000006077	Upf3b	94	54.054	Dipodomys_ordii
ENSGAFG00000000829	upf3b	96	54.286	ENSEASG00005012919	UPF3B	96	52.643	Equus_asinus_asinus
ENSGAFG00000000829	upf3b	96	54.286	ENSECAG00000016947	UPF3B	96	52.643	Equus_caballus
ENSGAFG00000000829	upf3b	99	63.223	ENSELUG00000020389	upf3b	100	66.598	Esox_lucius
ENSGAFG00000000829	upf3b	89	50.237	ENSELUG00000011050	upf3a	50	60.338	Esox_lucius
ENSGAFG00000000829	upf3b	96	53.291	ENSFCAG00000004388	UPF3B	86	57.353	Felis_catus
ENSGAFG00000000829	upf3b	96	48.559	ENSFCAG00000014602	UPF3A	86	42.725	Felis_catus
ENSGAFG00000000829	upf3b	94	49.053	ENSFALG00000001569	UPF3B	94	48.626	Ficedula_albicollis
ENSGAFG00000000829	upf3b	96	56.182	ENSFDAG00000018869	UPF3B	96	55.286	Fukomys_damarensis
ENSGAFG00000000829	upf3b	100	87.174	ENSFHEG00000017895	upf3b	100	85.000	Fundulus_heteroclitus
ENSGAFG00000000829	upf3b	100	65.393	ENSGMOG00000001621	upf3b	100	66.242	Gadus_morhua
ENSGAFG00000000829	upf3b	94	57.522	ENSGALG00000008618	UPF3B	99	56.000	Gallus_gallus
ENSGAFG00000000829	upf3b	100	74.946	ENSGACG00000017435	upf3b	94	86.381	Gasterosteus_aculeatus
ENSGAFG00000000829	upf3b	98	59.315	ENSGAGG00000001219	UPF3B	99	58.155	Gopherus_agassizii
ENSGAFG00000000829	upf3b	96	55.098	ENSGGOG00000023995	UPF3B	96	54.626	Gorilla_gorilla
ENSGAFG00000000829	upf3b	100	78.696	ENSHBUG00000017393	upf3b	100	78.043	Haplochromis_burtoni
ENSGAFG00000000829	upf3b	96	55.531	ENSHGLG00000019582	-	96	54.626	Heterocephalus_glaber_female
ENSGAFG00000000829	upf3b	70	57.313	ENSHGLG00000011189	-	69	57.732	Heterocephalus_glaber_female
ENSGAFG00000000829	upf3b	96	53.846	ENSHGLG00100002042	-	96	51.982	Heterocephalus_glaber_male
ENSGAFG00000000829	upf3b	70	57.313	ENSHGLG00100001889	-	69	57.732	Heterocephalus_glaber_male
ENSGAFG00000000829	upf3b	100	70.726	ENSHCOG00000017004	upf3b	100	70.538	Hippocampus_comes
ENSGAFG00000000829	upf3b	100	69.528	ENSIPUG00000019249	upf3b	100	67.597	Ictalurus_punctatus
ENSGAFG00000000829	upf3b	99	54.371	ENSSTOG00000001101	UPF3B	96	54.185	Ictidomys_tridecemlineatus
ENSGAFG00000000829	upf3b	94	55.629	ENSJJAG00000000053	Upf3b	88	55.048	Jaculus_jaculus
ENSGAFG00000000829	upf3b	91	44.131	ENSKMAG00000004381	upf3a	85	44.844	Kryptolebias_marmoratus
ENSGAFG00000000829	upf3b	100	84.464	ENSKMAG00000020300	upf3b	100	83.151	Kryptolebias_marmoratus
ENSGAFG00000000829	upf3b	61	86.232	ENSLBEG00000028689	upf3b	59	85.926	Labrus_bergylta
ENSGAFG00000000829	upf3b	100	59.236	ENSLACG00000008691	UPF3B	100	57.862	Latimeria_chalumnae
ENSGAFG00000000829	upf3b	93	53.349	ENSLOCG00000002665	upf3a	50	58.650	Lepisosteus_oculatus
ENSGAFG00000000829	upf3b	100	62.939	ENSLOCG00000015238	upf3b	100	68.341	Lepisosteus_oculatus
ENSGAFG00000000829	upf3b	96	55.604	ENSLAFG00000001267	UPF3B	96	54.846	Loxodonta_africana
ENSGAFG00000000829	upf3b	96	54.881	ENSMFAG00000045414	UPF3B	97	65.550	Macaca_fascicularis
ENSGAFG00000000829	upf3b	96	54.881	ENSMMUG00000020222	UPF3B	97	65.550	Macaca_mulatta
ENSGAFG00000000829	upf3b	96	54.881	ENSMNEG00000039794	UPF3B	97	65.550	Macaca_nemestrina
ENSGAFG00000000829	upf3b	96	55.098	ENSMLEG00000010999	UPF3B	97	65.550	Mandrillus_leucophaeus
ENSGAFG00000000829	upf3b	100	78.696	ENSMZEG00005007871	upf3b	100	78.043	Maylandia_zebra
ENSGAFG00000000829	upf3b	78	58.726	ENSMGAG00000007728	UPF3B	92	59.003	Meleagris_gallopavo
ENSGAFG00000000829	upf3b	94	53.020	ENSMAUG00000008705	Upf3b	84	54.408	Mesocricetus_auratus
ENSGAFG00000000829	upf3b	57	65.818	ENSMICG00000001743	UPF3B	88	65.550	Microcebus_murinus
ENSGAFG00000000829	upf3b	100	50.620	ENSMOCG00000017893	Upf3b	86	53.919	Microtus_ochrogaster
ENSGAFG00000000829	upf3b	100	76.586	ENSMMOG00000004183	upf3b	100	77.024	Mola_mola
ENSGAFG00000000829	upf3b	91	60.238	ENSMODG00000010232	UPF3B	97	57.007	Monodelphis_domestica
ENSGAFG00000000829	upf3b	100	78.541	ENSMALG00000008042	upf3b	100	77.253	Monopterus_albus
ENSGAFG00000000829	upf3b	94	54.405	MGP_CAROLIEiJ_G0032999	Upf3b	86	53.304	Mus_caroli
ENSGAFG00000000829	upf3b	94	55.432	ENSMUSG00000036572	Upf3b	87	53.275	Mus_musculus
ENSGAFG00000000829	upf3b	100	54.088	MGP_PahariEiJ_G0031543	Upf3b	86	54.626	Mus_pahari
ENSGAFG00000000829	upf3b	94	55.432	MGP_SPRETEiJ_G0034152	Upf3b	87	53.275	Mus_spretus
ENSGAFG00000000829	upf3b	96	56.018	ENSMPUG00000001531	UPF3B	98	53.084	Mustela_putorius_furo
ENSGAFG00000000829	upf3b	96	56.550	ENSMLUG00000010821	UPF3B	86	58.128	Myotis_lucifugus
ENSGAFG00000000829	upf3b	87	44.963	ENSMLUG00000015905	UPF3A	93	46.117	Myotis_lucifugus
ENSGAFG00000000829	upf3b	94	51.627	ENSNGAG00000008231	Upf3b	83	55.416	Nannospalax_galili
ENSGAFG00000000829	upf3b	92	57.447	ENSNLEG00000014897	UPF3B	86	57.037	Nomascus_leucogenys
ENSGAFG00000000829	upf3b	96	55.165	ENSODEG00000002186	-	96	53.377	Octodon_degus
ENSGAFG00000000829	upf3b	100	79.355	ENSONIG00000002536	upf3b	100	79.570	Oreochromis_niloticus
ENSGAFG00000000829	upf3b	89	54.893	ENSOANG00000002594	-	97	54.394	Ornithorhynchus_anatinus
ENSGAFG00000000829	upf3b	97	53.390	ENSOCUG00000010213	UPF3B	96	52.891	Oryctolagus_cuniculus
ENSGAFG00000000829	upf3b	100	76.856	ENSORLG00000001026	upf3b	100	76.201	Oryzias_latipes
ENSGAFG00000000829	upf3b	100	76.419	ENSORLG00020003758	upf3b	100	76.744	Oryzias_latipes_hni
ENSGAFG00000000829	upf3b	100	76.638	ENSORLG00015012954	upf3b	100	75.983	Oryzias_latipes_hsok
ENSGAFG00000000829	upf3b	88	51.961	ENSOMEG00000014425	upf3a	82	47.487	Oryzias_melastigma
ENSGAFG00000000829	upf3b	100	76.856	ENSOMEG00000014736	upf3b	100	76.201	Oryzias_melastigma
ENSGAFG00000000829	upf3b	96	55.531	ENSOGAG00000004643	-	96	54.405	Otolemur_garnettii
ENSGAFG00000000829	upf3b	96	54.212	ENSOGAG00000033003	-	98	53.813	Otolemur_garnettii
ENSGAFG00000000829	upf3b	89	46.173	ENSOARG00000007869	-	94	43.552	Ovis_aries
ENSGAFG00000000829	upf3b	96	53.911	ENSOARG00000016051	-	96	52.766	Ovis_aries
ENSGAFG00000000829	upf3b	96	55.098	ENSPPAG00000040390	UPF3B	96	54.626	Pan_paniscus
ENSGAFG00000000829	upf3b	96	56.114	ENSPPRG00000023536	UPF3B	86	57.635	Panthera_pardus
ENSGAFG00000000829	upf3b	96	48.444	ENSPPRG00000025062	UPF3A	86	42.725	Panthera_pardus
ENSGAFG00000000829	upf3b	96	53.066	ENSPTIG00000015264	UPF3B	88	65.072	Panthera_tigris_altaica
ENSGAFG00000000829	upf3b	96	55.098	ENSPTRG00000022228	UPF3B	96	54.626	Pan_troglodytes
ENSGAFG00000000829	upf3b	96	55.098	ENSPANG00000000900	UPF3B	97	65.550	Papio_anubis
ENSGAFG00000000829	upf3b	99	66.811	ENSPKIG00000019226	upf3b	93	82.639	Paramormyrops_kingsleyae
ENSGAFG00000000829	upf3b	57	65.152	ENSPSIG00000005833	UPF3B	88	65.737	Pelodiscus_sinensis
ENSGAFG00000000829	upf3b	92	48.837	ENSPSIG00000007468	UPF3A	99	43.155	Pelodiscus_sinensis
ENSGAFG00000000829	upf3b	58	85.932	ENSPMGG00000016067	upf3b	95	85.932	Periophthalmus_magnuspinnatus
ENSGAFG00000000829	upf3b	100	53.669	ENSPEMG00000012352	Upf3b	94	51.522	Peromyscus_maniculatus_bairdii
ENSGAFG00000000829	upf3b	93	57.442	ENSPCIG00000028914	UPF3B	87	54.632	Phascolarctos_cinereus
ENSGAFG00000000829	upf3b	76	53.488	ENSPCIG00000019590	-	63	65.972	Phascolarctos_cinereus
ENSGAFG00000000829	upf3b	91	40.132	ENSPFOG00000013222	upf3a	83	42.155	Poecilia_formosa
ENSGAFG00000000829	upf3b	100	97.351	ENSPLAG00000019922	upf3b	100	97.351	Poecilia_latipinna
ENSGAFG00000000829	upf3b	91	49.647	ENSPLAG00000011960	upf3a	86	50.602	Poecilia_latipinna
ENSGAFG00000000829	upf3b	100	97.351	ENSPLAG00000005105	upf3b	100	97.351	Poecilia_latipinna
ENSGAFG00000000829	upf3b	100	96.909	ENSPMEG00000023532	upf3b	100	96.909	Poecilia_mexicana
ENSGAFG00000000829	upf3b	60	71.711	ENSPMEG00000000836	upf3a	86	42.212	Poecilia_mexicana
ENSGAFG00000000829	upf3b	62	60.811	ENSPPYG00000020675	-	63	65.550	Pongo_abelii
ENSGAFG00000000829	upf3b	99	52.708	ENSPCAG00000009464	UPF3B	88	53.846	Procavia_capensis
ENSGAFG00000000829	upf3b	96	55.799	ENSPCOG00000021960	UPF3B	93	55.656	Propithecus_coquereli
ENSGAFG00000000829	upf3b	96	46.170	ENSPVAG00000014075	UPF3B	86	46.411	Pteropus_vampyrus
ENSGAFG00000000829	upf3b	100	79.258	ENSPNYG00000009846	upf3b	100	79.039	Pundamilia_nyererei
ENSGAFG00000000829	upf3b	100	70.299	ENSPNAG00000021528	upf3b	100	82.625	Pygocentrus_nattereri
ENSGAFG00000000829	upf3b	94	55.432	ENSRNOG00000039994	Upf3b	83	56.250	Rattus_norvegicus
ENSGAFG00000000829	upf3b	81	55.080	ENSRBIG00000037219	UPF3B	95	55.313	Rhinopithecus_bieti
ENSGAFG00000000829	upf3b	96	55.098	ENSRROG00000041031	UPF3B	97	65.550	Rhinopithecus_roxellana
ENSGAFG00000000829	upf3b	96	55.604	ENSSBOG00000019740	UPF3B	99	64.115	Saimiri_boliviensis_boliviensis
ENSGAFG00000000829	upf3b	98	54.906	ENSSHAG00000008634	UPF3B	99	52.807	Sarcophilus_harrisii
ENSGAFG00000000829	upf3b	99	68.709	ENSSFOG00015005614	upf3b	100	68.777	Scleropages_formosus
ENSGAFG00000000829	upf3b	100	76.445	ENSSMAG00000012913	upf3b	100	89.883	Scophthalmus_maximus
ENSGAFG00000000829	upf3b	89	43.596	ENSSDUG00000009680	upf3a	55	76.404	Seriola_dumerili
ENSGAFG00000000829	upf3b	100	79.004	ENSSDUG00000005682	upf3b	100	78.788	Seriola_dumerili
ENSGAFG00000000829	upf3b	100	79.654	ENSSLDG00000003130	upf3b	100	78.139	Seriola_lalandi_dorsalis
ENSGAFG00000000829	upf3b	89	54.157	ENSSARG00000004147	UPF3B	97	55.660	Sorex_araneus
ENSGAFG00000000829	upf3b	98	55.394	ENSSPUG00000013082	UPF3B	99	54.357	Sphenodon_punctatus
ENSGAFG00000000829	upf3b	99	80.659	ENSSPAG00000009989	upf3b	99	80.659	Stegastes_partitus
ENSGAFG00000000829	upf3b	91	48.810	ENSSPAG00000007938	upf3a	72	70.701	Stegastes_partitus
ENSGAFG00000000829	upf3b	97	55.531	ENSSSCG00000012617	UPF3B	86	57.284	Sus_scrofa
ENSGAFG00000000829	upf3b	90	59.662	ENSTGUG00000003413	UPF3B	93	60.553	Taeniopygia_guttata
ENSGAFG00000000829	upf3b	90	49.761	ENSTRUG00000012730	upf3a	50	63.485	Takifugu_rubripes
ENSGAFG00000000829	upf3b	100	74.017	ENSTRUG00000010645	upf3b	100	71.616	Takifugu_rubripes
ENSGAFG00000000829	upf3b	100	66.161	ENSTNIG00000015763	upf3b	100	62.771	Tetraodon_nigroviridis
ENSGAFG00000000829	upf3b	94	46.004	ENSTBEG00000003229	UPF3B	93	46.374	Tupaia_belangeri
ENSGAFG00000000829	upf3b	96	53.132	ENSUAMG00000024565	UPF3B	96	52.747	Ursus_americanus
ENSGAFG00000000829	upf3b	89	53.269	ENSUMAG00000002150	UPF3B	87	53.448	Ursus_maritimus
ENSGAFG00000000829	upf3b	84	55.838	ENSVPAG00000009971	UPF3B	95	54.707	Vicugna_pacos
ENSGAFG00000000829	upf3b	96	51.634	ENSVVUG00000011594	UPF3B	97	65.550	Vulpes_vulpes
ENSGAFG00000000829	upf3b	94	53.409	ENSXETG00000007440	upf3b	84	75.773	Xenopus_tropicalis
ENSGAFG00000000829	upf3b	100	86.976	ENSXCOG00000016586	upf3b	98	97.959	Xiphophorus_couchianus
ENSGAFG00000000829	upf3b	100	97.351	ENSXMAG00000013680	upf3b	100	97.351	Xiphophorus_maculatus
ENSGAFG00000000829	upf3b	60	70.000	ENSXMAG00000013452	upf3a	50	66.013	Xiphophorus_maculatus