EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000001577 (Gene tree)
Gene ID: -
Gene Symbol: trmt13
Alias: ccdc76|fe24e02|wu:fe24e02|zgc:110839
Full Name: tRNA methyltransferase 13 homolog
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 5159 bases
Position: chrNHOQ01002037.1:100434-105592
Accession: ZDB-GENE-050327-19
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000002347	TRM13	PF05206.14	3.2e-61	1	1
ENSGAFP00000002303	TRM13	PF05206.14	2.5e-22	1	1
ENSGAFP00000002385	zf-U11-48K	PF05253.12	2.3e-10	1	1
ENSGAFP00000002361	zf-U11-48K	PF05253.12	3.1e-10	1	1
ENSGAFP00000002303	zf-U11-48K	PF05253.12	4.3e-10	1	1
ENSGAFP00000002347	zf-U11-48K	PF05253.12	7.9e-10	1	1
ENSGAFP00000002361	zf-TRM13_CCCH	PF11722.8	4.4e-13	1	1
ENSGAFP00000002303	zf-TRM13_CCCH	PF11722.8	1.2e-12	1	1
ENSGAFP00000002347	zf-TRM13_CCCH	PF11722.8	3.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000002372	-	1307	-	ENSGAFP00000002347	435 (aa)	-	-
ENSGAFT00000002328	-	897	-	ENSGAFP00000002303	298 (aa)	-	-
ENSGAFT00000002410	-	459	-	ENSGAFP00000002385	152 (aa)	-	-
ENSGAFT00000002386	-	435	-	ENSGAFP00000002361	144 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000001577's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000001577's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000001577	trmt13	81	51.613	ENSG00000122435	TRMT13	95	51.200	Homo_sapiens
ENSGAFG00000001577	trmt13	86	64.508	ENSAPOG00000015131	trmt13	85	64.748	Acanthochromis_polyacanthus
ENSGAFG00000001577	trmt13	81	51.075	ENSAMEG00000008917	TRMT13	75	51.075	Ailuropoda_melanoleuca
ENSGAFG00000001577	trmt13	86	64.885	ENSACIG00000005804	trmt13	94	57.692	Amphilophus_citrinellus
ENSGAFG00000001577	trmt13	81	66.834	ENSAOCG00000023585	trmt13	81	66.834	Amphiprion_ocellaris
ENSGAFG00000001577	trmt13	81	66.834	ENSAPEG00000004025	trmt13	81	66.834	Amphiprion_percula
ENSGAFG00000001577	trmt13	81	67.925	ENSATEG00000006597	trmt13	77	67.925	Anabas_testudineus
ENSGAFG00000001577	trmt13	72	56.193	ENSAPLG00000014924	TRMT13	75	56.193	Anas_platyrhynchos
ENSGAFG00000001577	trmt13	81	53.495	ENSACAG00000003498	TRMT13	77	53.495	Anolis_carolinensis
ENSGAFG00000001577	trmt13	81	51.613	ENSANAG00000019525	TRMT13	85	56.383	Aotus_nancymaae
ENSGAFG00000001577	trmt13	83	69.437	ENSACLG00000020018	trmt13	83	69.437	Astatotilapia_calliptera
ENSGAFG00000001577	trmt13	81	58.172	ENSAMXG00000017963	trmt13	75	58.172	Astyanax_mexicanus
ENSGAFG00000001577	trmt13	83	49.608	ENSBTAG00000015781	TRMT13	77	49.608	Bos_taurus
ENSGAFG00000001577	trmt13	78	30.000	WBGene00013026	Y49A3A.3	64	30.000	Caenorhabditis_elegans
ENSGAFG00000001577	trmt13	81	50.538	ENSCJAG00000000200	TRMT13	89	57.447	Callithrix_jacchus
ENSGAFG00000001577	trmt13	83	52.222	ENSCAFG00020011572	TRMT13	94	52.265	Canis_lupus_dingo
ENSGAFG00000001577	trmt13	83	49.869	ENSCHIG00000015395	TRMT13	77	49.869	Capra_hircus
ENSGAFG00000001577	trmt13	81	51.989	ENSTSYG00000010811	TRMT13	98	56.000	Carlito_syrichta
ENSGAFG00000001577	trmt13	81	51.323	ENSCPOG00000000694	TRMT13	76	51.323	Cavia_porcellus
ENSGAFG00000001577	trmt13	81	51.882	ENSCCAG00000023772	TRMT13	85	55.319	Cebus_capucinus
ENSGAFG00000001577	trmt13	81	51.882	ENSCATG00000033556	TRMT13	85	57.447	Cercocebus_atys
ENSGAFG00000001577	trmt13	71	52.266	ENSCLAG00000008220	TRMT13	76	52.266	Chinchilla_lanigera
ENSGAFG00000001577	trmt13	81	50.943	ENSCSAG00000001506	TRMT13	75	50.943	Chlorocebus_sabaeus
ENSGAFG00000001577	trmt13	82	53.358	ENSCPBG00000026671	TRMT13	76	53.050	Chrysemys_picta_bellii
ENSGAFG00000001577	trmt13	81	51.613	ENSCANG00000034659	TRMT13	85	56.383	Colobus_angolensis_palliatus
ENSGAFG00000001577	trmt13	81	51.330	ENSCGRG00001021601	Trmt13	75	51.330	Cricetulus_griseus_chok1gshd
ENSGAFG00000001577	trmt13	82	68.169	ENSCSEG00000000591	trmt13	80	68.169	Cynoglossus_semilaevis
ENSGAFG00000001577	trmt13	85	71.979	ENSCVAG00000017342	trmt13	79	71.979	Cyprinodon_variegatus
ENSGAFG00000001577	trmt13	81	56.065	ENSDARG00000102846	trmt13	78	56.065	Danio_rerio
ENSGAFG00000001577	trmt13	82	48.889	ENSDNOG00000001710	TRMT13	80	53.285	Dasypus_novemcinctus
ENSGAFG00000001577	trmt13	83	49.487	ENSDORG00000015808	Trmt13	78	49.487	Dipodomys_ordii
ENSGAFG00000001577	trmt13	83	35.789	FBgn0037435	CG18048	79	36.243	Drosophila_melanogaster
ENSGAFG00000001577	trmt13	81	44.415	ENSETEG00000005819	TRMT13	76	44.415	Echinops_telfairi
ENSGAFG00000001577	trmt13	80	46.505	ENSEBUG00000014444	trmt13	79	46.505	Eptatretus_burgeri
ENSGAFG00000001577	trmt13	81	50.667	ENSEASG00005015918	TRMT13	75	50.667	Equus_asinus_asinus
ENSGAFG00000001577	trmt13	81	50.667	ENSECAG00000022626	TRMT13	75	50.667	Equus_caballus
ENSGAFG00000001577	trmt13	70	49.784	ENSEEUG00000000294	TRMT13	57	46.643	Erinaceus_europaeus
ENSGAFG00000001577	trmt13	83	54.684	ENSELUG00000003803	trmt13	82	54.684	Esox_lucius
ENSGAFG00000001577	trmt13	81	50.538	ENSFCAG00000030618	TRMT13	98	48.951	Felis_catus
ENSGAFG00000001577	trmt13	80	55.858	ENSFALG00000002424	TRMT13	75	55.858	Ficedula_albicollis
ENSGAFG00000001577	trmt13	81	51.613	ENSFDAG00000006342	TRMT13	75	51.613	Fukomys_damarensis
ENSGAFG00000001577	trmt13	86	70.927	ENSFHEG00000022954	trmt13	96	71.178	Fundulus_heteroclitus
ENSGAFG00000001577	trmt13	79	57.102	ENSGMOG00000013223	trmt13	85	57.102	Gadus_morhua
ENSGAFG00000001577	trmt13	80	55.464	ENSGALG00000005290	TRMT13	76	55.676	Gallus_gallus
ENSGAFG00000001577	trmt13	82	70.137	ENSGACG00000013428	trmt13	79	70.137	Gasterosteus_aculeatus
ENSGAFG00000001577	trmt13	83	51.493	ENSGAGG00000023303	TRMT13	96	55.755	Gopherus_agassizii
ENSGAFG00000001577	trmt13	81	51.613	ENSGGOG00000005616	TRMT13	85	56.383	Gorilla_gorilla
ENSGAFG00000001577	trmt13	83	68.883	ENSHBUG00000007754	trmt13	83	68.883	Haplochromis_burtoni
ENSGAFG00000001577	trmt13	81	51.882	ENSHGLG00000002164	TRMT13	75	51.882	Heterocephalus_glaber_female
ENSGAFG00000001577	trmt13	81	51.882	ENSHGLG00100001618	TRMT13	75	51.882	Heterocephalus_glaber_male
ENSGAFG00000001577	trmt13	81	59.889	ENSHCOG00000020553	trmt13	81	59.331	Hippocampus_comes
ENSGAFG00000001577	trmt13	81	57.534	ENSIPUG00000024787	trmt13	89	56.134	Ictalurus_punctatus
ENSGAFG00000001577	trmt13	81	51.200	ENSSTOG00000013483	TRMT13	75	51.200	Ictidomys_tridecemlineatus
ENSGAFG00000001577	trmt13	81	51.344	ENSJJAG00000018012	Trmt13	76	51.344	Jaculus_jaculus
ENSGAFG00000001577	trmt13	81	66.488	ENSLBEG00000020238	trmt13	80	67.024	Labrus_bergylta
ENSGAFG00000001577	trmt13	83	53.034	ENSLACG00000013153	TRMT13	78	53.034	Latimeria_chalumnae
ENSGAFG00000001577	trmt13	86	53.093	ENSLOCG00000000418	trmt13	81	53.608	Lepisosteus_oculatus
ENSGAFG00000001577	trmt13	59	49.638	ENSLAFG00000002383	TRMT13	72	49.638	Loxodonta_africana
ENSGAFG00000001577	trmt13	81	51.075	ENSMFAG00000034681	TRMT13	85	56.383	Macaca_fascicularis
ENSGAFG00000001577	trmt13	81	51.075	ENSMMUG00000004243	TRMT13	85	56.383	Macaca_mulatta
ENSGAFG00000001577	trmt13	81	51.075	ENSMNEG00000036102	TRMT13	85	56.383	Macaca_nemestrina
ENSGAFG00000001577	trmt13	81	51.882	ENSMLEG00000034258	TRMT13	85	57.447	Mandrillus_leucophaeus
ENSGAFG00000001577	trmt13	80	68.306	ENSMAMG00000016597	trmt13	77	68.306	Mastacembelus_armatus
ENSGAFG00000001577	trmt13	83	69.169	ENSMZEG00005020959	trmt13	83	69.169	Maylandia_zebra
ENSGAFG00000001577	trmt13	72	55.120	ENSMGAG00000006970	TRMT13	76	55.120	Meleagris_gallopavo
ENSGAFG00000001577	trmt13	81	50.802	ENSMAUG00000010448	Trmt13	75	50.802	Mesocricetus_auratus
ENSGAFG00000001577	trmt13	81	51.733	ENSMICG00000005283	TRMT13	95	51.200	Microcebus_murinus
ENSGAFG00000001577	trmt13	81	50.798	ENSMOCG00000019914	Trmt13	76	50.798	Microtus_ochrogaster
ENSGAFG00000001577	trmt13	82	51.698	ENSMMOG00000007762	trmt13	90	60.886	Mola_mola
ENSGAFG00000001577	trmt13	82	50.781	ENSMODG00000003646	TRMT13	77	50.781	Monodelphis_domestica
ENSGAFG00000001577	trmt13	83	66.120	ENSMALG00000020965	trmt13	95	57.500	Monopterus_albus
ENSGAFG00000001577	trmt13	82	51.451	MGP_CAROLIEiJ_G0025568	Trmt13	97	51.178	Mus_caroli
ENSGAFG00000001577	trmt13	83	49.815	ENSMUSG00000033439	Trmt13	97	51.178	Mus_musculus
ENSGAFG00000001577	trmt13	82	51.047	MGP_PahariEiJ_G0027014	Trmt13	97	51.515	Mus_pahari
ENSGAFG00000001577	trmt13	82	50.396	MGP_SPRETEiJ_G0026518	Trmt13	97	51.178	Mus_spretus
ENSGAFG00000001577	trmt13	60	48.592	ENSMPUG00000002078	-	75	48.592	Mustela_putorius_furo
ENSGAFG00000001577	trmt13	67	51.515	ENSMPUG00000012169	-	88	52.066	Mustela_putorius_furo
ENSGAFG00000001577	trmt13	81	50.538	ENSMLUG00000002124	TRMT13	75	50.538	Myotis_lucifugus
ENSGAFG00000001577	trmt13	84	62.042	ENSNBRG00000006783	trmt13	82	62.042	Neolamprologus_brichardi
ENSGAFG00000001577	trmt13	81	51.344	ENSNLEG00000035917	TRMT13	85	56.383	Nomascus_leucogenys
ENSGAFG00000001577	trmt13	73	44.813	ENSMEUG00000013346	-	97	44.813	Notamacropus_eugenii
ENSGAFG00000001577	trmt13	79	52.896	ENSOPRG00000012048	TRMT13	54	53.333	Ochotona_princeps
ENSGAFG00000001577	trmt13	79	45.517	ENSODEG00000006075	-	88	53.548	Octodon_degus
ENSGAFG00000001577	trmt13	85	67.442	ENSONIG00000004574	trmt13	84	68.421	Oreochromis_niloticus
ENSGAFG00000001577	trmt13	71	53.916	ENSOANG00000012057	TRMT13	74	53.916	Ornithorhynchus_anatinus
ENSGAFG00000001577	trmt13	79	52.124	ENSOCUG00000023095	TRMT13	75	50.000	Oryctolagus_cuniculus
ENSGAFG00000001577	trmt13	84	59.269	ENSORLG00000003320	trmt13	81	60.052	Oryzias_latipes
ENSGAFG00000001577	trmt13	84	61.478	ENSORLG00020005972	trmt13	80	61.478	Oryzias_latipes_hni
ENSGAFG00000001577	trmt13	81	68.750	ENSORLG00015002270	trmt13	79	68.207	Oryzias_latipes_hsok
ENSGAFG00000001577	trmt13	84	68.883	ENSOMEG00000006724	trmt13	79	68.451	Oryzias_melastigma
ENSGAFG00000001577	trmt13	81	50.663	ENSOGAG00000005618	TRMT13	73	50.663	Otolemur_garnettii
ENSGAFG00000001577	trmt13	83	49.869	ENSOARG00000017983	TRMT13	77	49.869	Ovis_aries
ENSGAFG00000001577	trmt13	81	51.613	ENSPPAG00000043736	TRMT13	85	56.383	Pan_paniscus
ENSGAFG00000001577	trmt13	81	50.538	ENSPPRG00000003424	TRMT13	98	48.951	Panthera_pardus
ENSGAFG00000001577	trmt13	81	50.538	ENSPTIG00000018598	TRMT13	98	48.951	Panthera_tigris_altaica
ENSGAFG00000001577	trmt13	81	51.613	ENSPTRG00000001001	TRMT13	85	56.383	Pan_troglodytes
ENSGAFG00000001577	trmt13	81	51.613	ENSPANG00000007598	TRMT13	85	56.383	Papio_anubis
ENSGAFG00000001577	trmt13	83	56.438	ENSPKIG00000001514	trmt13	79	56.438	Paramormyrops_kingsleyae
ENSGAFG00000001577	trmt13	77	52.381	ENSPSIG00000012703	TRMT13	82	52.381	Pelodiscus_sinensis
ENSGAFG00000001577	trmt13	82	60.377	ENSPMGG00000013298	trmt13	77	60.377	Periophthalmus_magnuspinnatus
ENSGAFG00000001577	trmt13	81	51.075	ENSPEMG00000000275	Trmt13	75	51.075	Peromyscus_maniculatus_bairdii
ENSGAFG00000001577	trmt13	81	50.000	ENSPMAG00000000823	trmt13	76	49.740	Petromyzon_marinus
ENSGAFG00000001577	trmt13	83	51.958	ENSPCIG00000007699	TRMT13	78	52.219	Phascolarctos_cinereus
ENSGAFG00000001577	trmt13	85	89.757	ENSPFOG00000008675	trmt13	80	89.757	Poecilia_formosa
ENSGAFG00000001577	trmt13	86	93.583	ENSPLAG00000009709	trmt13	84	93.583	Poecilia_latipinna
ENSGAFG00000001577	trmt13	86	93.316	ENSPMEG00000022954	trmt13	84	93.316	Poecilia_mexicana
ENSGAFG00000001577	trmt13	88	92.126	ENSPREG00000005645	trmt13	94	85.563	Poecilia_reticulata
ENSGAFG00000001577	trmt13	80	52.446	ENSPPYG00000001120	TRMT13	74	52.446	Pongo_abelii
ENSGAFG00000001577	trmt13	81	50.269	ENSPCAG00000002340	TRMT13	75	50.269	Procavia_capensis
ENSGAFG00000001577	trmt13	81	52.000	ENSPCOG00000017984	TRMT13	85	56.383	Propithecus_coquereli
ENSGAFG00000001577	trmt13	81	50.667	ENSPVAG00000017430	TRMT13	75	50.667	Pteropus_vampyrus
ENSGAFG00000001577	trmt13	83	66.223	ENSPNYG00000013690	trmt13	82	66.223	Pundamilia_nyererei
ENSGAFG00000001577	trmt13	81	56.486	ENSPNAG00000022130	trmt13	78	56.486	Pygocentrus_nattereri
ENSGAFG00000001577	trmt13	81	50.802	ENSRNOG00000015140	Trmt13	73	50.802	Rattus_norvegicus
ENSGAFG00000001577	trmt13	81	51.613	ENSRBIG00000037686	TRMT13	85	56.383	Rhinopithecus_bieti
ENSGAFG00000001577	trmt13	81	51.613	ENSRROG00000044057	TRMT13	85	56.383	Rhinopithecus_roxellana
ENSGAFG00000001577	trmt13	81	51.613	ENSSBOG00000026541	TRMT13	85	56.383	Saimiri_boliviensis_boliviensis
ENSGAFG00000001577	trmt13	74	52.059	ENSSHAG00000005213	TRMT13	73	52.059	Sarcophilus_harrisii
ENSGAFG00000001577	trmt13	85	56.010	ENSSFOG00015017560	trmt13	82	56.010	Scleropages_formosus
ENSGAFG00000001577	trmt13	82	66.223	ENSSMAG00000014592	trmt13	78	66.223	Scophthalmus_maximus
ENSGAFG00000001577	trmt13	82	67.717	ENSSDUG00000015508	trmt13	78	67.717	Seriola_dumerili
ENSGAFG00000001577	trmt13	82	67.717	ENSSLDG00000019060	trmt13	78	67.717	Seriola_lalandi_dorsalis
ENSGAFG00000001577	trmt13	80	44.837	ENSSARG00000010344	TRMT13	75	44.837	Sorex_araneus
ENSGAFG00000001577	trmt13	80	52.316	ENSSPUG00000016339	TRMT13	77	52.316	Sphenodon_punctatus
ENSGAFG00000001577	trmt13	81	68.919	ENSSPAG00000011922	trmt13	79	68.919	Stegastes_partitus
ENSGAFG00000001577	trmt13	81	50.798	ENSSSCG00000006869	TRMT13	75	50.798	Sus_scrofa
ENSGAFG00000001577	trmt13	85	53.093	ENSTGUG00000005253	TRMT13	82	53.093	Taeniopygia_guttata
ENSGAFG00000001577	trmt13	85	65.768	ENSTRUG00000008400	trmt13	80	65.768	Takifugu_rubripes
ENSGAFG00000001577	trmt13	51	63.158	ENSTBEG00000008911	TRMT13	52	63.158	Tupaia_belangeri
ENSGAFG00000001577	trmt13	81	48.378	ENSUAMG00000017251	TRMT13	74	48.378	Ursus_americanus
ENSGAFG00000001577	trmt13	81	51.075	ENSUMAG00000007901	TRMT13	75	51.075	Ursus_maritimus
ENSGAFG00000001577	trmt13	58	61.224	ENSVPAG00000001034	TRMT13	60	61.224	Vicugna_pacos
ENSGAFG00000001577	trmt13	79	53.282	ENSVVUG00000021996	TRMT13	80	46.694	Vulpes_vulpes
ENSGAFG00000001577	trmt13	82	53.533	ENSXETG00000013204	trmt13	78	53.533	Xenopus_tropicalis
ENSGAFG00000001577	trmt13	69	76.471	ENSXCOG00000008120	-	90	95.918	Xiphophorus_couchianus
ENSGAFG00000001577	trmt13	86	94.652	ENSXMAG00000010765	trmt13	84	94.652	Xiphophorus_maculatus