EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000002865 (Gene tree)
Gene ID: -
Gene Symbol: srsf5b
Alias: sfrs5b|wu:fe15e05|zgc:113907|zgc:92278
Full Name: serine/arginine-rich splicing factor 5b
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 6513 bases
Position: chrNHOQ01001000.1:15404922-15411434
Accession: ZDB-GENE-040718-354
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000004240	RRM_1	PF00076.22	5.2e-32	1	2
ENSGAFP00000004240	RRM_1	PF00076.22	5.2e-32	2	2
ENSGAFP00000004255	RRM_1	PF00076.22	5.2e-32	1	2
ENSGAFP00000004255	RRM_1	PF00076.22	5.2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000004298	-	2439	-	ENSGAFP00000004240	301 (aa)	-	-
ENSGAFT00000004306	-	2279	-	ENSGAFP00000004255	301 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000002865's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000002865's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000002865	srsf5b	55	48.023	ENSGAFG00000000609	-	66	50.289
ENSGAFG00000002865	srsf5b	61	64.674	ENSGAFG00000018237	srsf5a	55	63.830
ENSGAFG00000002865	srsf5b	77	52.075	ENSGAFG00000018496	srsf4	63	58.889
ENSGAFG00000002865	srsf5b	58	40.556	ENSGAFG00000009123	srsf9	91	40.758
ENSGAFG00000002865	srsf5b	59	43.478	ENSGAFG00000012721	-	64	43.094

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000002865	srsf5b	89	94.052	ENSAPOG00000008642	srsf5b	92	94.052	Acanthochromis_polyacanthus
ENSGAFG00000002865	srsf5b	100	90.099	ENSACIG00000010742	srsf5b	92	91.111	Amphilophus_citrinellus
ENSGAFG00000002865	srsf5b	89	93.680	ENSAOCG00000005719	srsf5b	92	93.680	Amphiprion_ocellaris
ENSGAFG00000002865	srsf5b	89	93.680	ENSAPEG00000007830	srsf5b	92	93.680	Amphiprion_percula
ENSGAFG00000002865	srsf5b	89	93.309	ENSATEG00000019112	srsf5b	92	92.937	Anabas_testudineus
ENSGAFG00000002865	srsf5b	63	82.632	ENSAPLG00000014681	SRSF5	96	70.357	Anas_platyrhynchos
ENSGAFG00000002865	srsf5b	74	72.444	ENSACAG00000005143	SRSF5	96	73.529	Anolis_carolinensis
ENSGAFG00000002865	srsf5b	61	82.703	ENSANAG00000027977	-	94	72.830	Aotus_nancymaae
ENSGAFG00000002865	srsf5b	100	91.060	ENSACLG00000026424	srsf5b	92	94.052	Astatotilapia_calliptera
ENSGAFG00000002865	srsf5b	63	94.180	ENSAMXG00000011932	srsf5b	84	94.531	Astyanax_mexicanus
ENSGAFG00000002865	srsf5b	63	81.771	ENSTSYG00000007786	SRSF5	96	73.260	Carlito_syrichta
ENSGAFG00000002865	srsf5b	61	82.703	ENSCAPG00000008801	SRSF5	91	74.231	Cavia_aperea
ENSGAFG00000002865	srsf5b	61	82.703	ENSCPOG00000039926	SRSF5	91	74.046	Cavia_porcellus
ENSGAFG00000002865	srsf5b	61	82.703	ENSCCAG00000029002	SRSF5	94	72.830	Cebus_capucinus
ENSGAFG00000002865	srsf5b	61	82.703	ENSCATG00000045051	SRSF5	94	72.830	Cercocebus_atys
ENSGAFG00000002865	srsf5b	63	81.771	ENSCLAG00000004755	SRSF5	96	72.727	Chinchilla_lanigera
ENSGAFG00000002865	srsf5b	74	71.556	ENSCPBG00000021653	SRSF5	96	73.162	Chrysemys_picta_bellii
ENSGAFG00000002865	srsf5b	61	82.703	ENSCANG00000030560	SRSF5	94	72.830	Colobus_angolensis_palliatus
ENSGAFG00000002865	srsf5b	81	92.713	ENSCSEG00000003801	srsf5b	91	90.637	Cynoglossus_semilaevis
ENSGAFG00000002865	srsf5b	100	90.462	ENSCVAG00000017240	srsf5b	100	90.462	Cyprinodon_variegatus
ENSGAFG00000002865	srsf5b	61	94.054	ENSDARG00000027734	srsf5b	90	93.750	Danio_rerio
ENSGAFG00000002865	srsf5b	61	82.703	ENSDNOG00000006160	SRSF5	92	74.231	Dasypus_novemcinctus
ENSGAFG00000002865	srsf5b	61	78.261	ENSETEG00000020396	SRSF5	91	71.206	Echinops_telfairi
ENSGAFG00000002865	srsf5b	62	62.755	ENSEBUG00000006229	srsf5b	89	51.825	Eptatretus_burgeri
ENSGAFG00000002865	srsf5b	89	70.724	ENSELUG00000019852	srsf5b	85	80.556	Esox_lucius
ENSGAFG00000002865	srsf5b	61	82.065	ENSFALG00000004979	SRSF5	94	72.727	Ficedula_albicollis
ENSGAFG00000002865	srsf5b	61	82.703	ENSFDAG00000011562	SRSF5	92	74.231	Fukomys_damarensis
ENSGAFG00000002865	srsf5b	100	94.788	ENSFHEG00000009476	srsf5b	100	94.788	Fundulus_heteroclitus
ENSGAFG00000002865	srsf5b	62	77.434	ENSGMOG00000000595	srsf5b	99	76.549	Gadus_morhua
ENSGAFG00000002865	srsf5b	61	81.522	ENSGALG00000009421	SRSF5	88	75.781	Gallus_gallus
ENSGAFG00000002865	srsf5b	62	67.886	ENSGACG00000007834	srsf5b	86	83.824	Gasterosteus_aculeatus
ENSGAFG00000002865	srsf5b	74	71.556	ENSGAGG00000004447	SRSF5	96	73.162	Gopherus_agassizii
ENSGAFG00000002865	srsf5b	61	82.703	ENSGGOG00000016462	SRSF5	94	72.830	Gorilla_gorilla
ENSGAFG00000002865	srsf5b	100	90.728	ENSHBUG00000012462	srsf5b	93	99.219	Haplochromis_burtoni
ENSGAFG00000002865	srsf5b	59	59.777	ENSHGLG00100000095	-	62	59.444	Heterocephalus_glaber_male
ENSGAFG00000002865	srsf5b	62	88.542	ENSHCOG00000005592	srsf5b	91	77.091	Hippocampus_comes
ENSGAFG00000002865	srsf5b	89	95.539	ENSKMAG00000020486	srsf5b	89	95.167	Kryptolebias_marmoratus
ENSGAFG00000002865	srsf5b	89	91.144	ENSLBEG00000013647	srsf5b	92	90.406	Labrus_bergylta
ENSGAFG00000002865	srsf5b	61	84.239	ENSLACG00000005874	SRSF5	92	75.379	Latimeria_chalumnae
ENSGAFG00000002865	srsf5b	61	86.243	ENSLOCG00000012438	srsf5b	70	82.383	Lepisosteus_oculatus
ENSGAFG00000002865	srsf5b	61	82.162	ENSLAFG00000005260	SRSF5	92	73.846	Loxodonta_africana
ENSGAFG00000002865	srsf5b	61	82.703	ENSMFAG00000002393	SRSF5	94	72.830	Macaca_fascicularis
ENSGAFG00000002865	srsf5b	61	82.703	ENSMNEG00000030872	SRSF5	94	72.830	Macaca_nemestrina
ENSGAFG00000002865	srsf5b	61	82.703	ENSMLEG00000030017	SRSF5	94	72.830	Mandrillus_leucophaeus
ENSGAFG00000002865	srsf5b	83	93.625	ENSMAMG00000002673	srsf5b	92	92.565	Mastacembelus_armatus
ENSGAFG00000002865	srsf5b	100	91.060	ENSMZEG00005003550	srsf5b	92	94.052	Maylandia_zebra
ENSGAFG00000002865	srsf5b	63	82.292	ENSMODG00000011362	SRSF5	96	72.794	Monodelphis_domestica
ENSGAFG00000002865	srsf5b	89	91.176	ENSMALG00000021875	srsf5b	84	98.450	Monopterus_albus
ENSGAFG00000002865	srsf5b	100	86.842	ENSNBRG00000001285	srsf5b	92	90.775	Neolamprologus_brichardi
ENSGAFG00000002865	srsf5b	61	82.703	ENSNLEG00000001615	SRSF5	94	72.830	Nomascus_leucogenys
ENSGAFG00000002865	srsf5b	63	81.771	ENSOPRG00000008286	SRSF5	95	72.464	Ochotona_princeps
ENSGAFG00000002865	srsf5b	61	82.703	ENSODEG00000013469	-	92	74.615	Octodon_degus
ENSGAFG00000002865	srsf5b	100	91.060	ENSONIG00000005759	srsf5b	92	94.052	Oreochromis_niloticus
ENSGAFG00000002865	srsf5b	65	78.571	ENSOANG00000013336	SRSF5	96	68.571	Ornithorhynchus_anatinus
ENSGAFG00000002865	srsf5b	93	66.786	ENSOCUG00000009274	SRSF5	95	72.364	Oryctolagus_cuniculus
ENSGAFG00000002865	srsf5b	89	78.451	ENSORLG00000029854	srsf5b	92	79.461	Oryzias_latipes
ENSGAFG00000002865	srsf5b	89	90.775	ENSORLG00015001720	srsf5b	92	91.144	Oryzias_latipes_hsok
ENSGAFG00000002865	srsf5b	90	90.110	ENSOMEG00000020690	srsf5b	67	89.630	Oryzias_melastigma
ENSGAFG00000002865	srsf5b	61	82.703	ENSPPAG00000029921	SRSF5	94	72.830	Pan_paniscus
ENSGAFG00000002865	srsf5b	61	82.703	ENSPTRG00000006488	SRSF5	94	72.830	Pan_troglodytes
ENSGAFG00000002865	srsf5b	61	82.703	ENSPANG00000021091	SRSF5	94	72.830	Papio_anubis
ENSGAFG00000002865	srsf5b	61	83.243	ENSPSIG00000012522	SRSF5	93	75.385	Pelodiscus_sinensis
ENSGAFG00000002865	srsf5b	63	61.111	ENSPMAG00000007790	srsf5b	68	60.914	Petromyzon_marinus
ENSGAFG00000002865	srsf5b	63	82.292	ENSPCIG00000011877	SRSF5	96	72.794	Phascolarctos_cinereus
ENSGAFG00000002865	srsf5b	100	99.336	ENSPFOG00000017700	srsf5b	100	99.336	Poecilia_formosa
ENSGAFG00000002865	srsf5b	100	99.007	ENSPLAG00000006480	srsf5b	100	99.007	Poecilia_latipinna
ENSGAFG00000002865	srsf5b	100	99.336	ENSPMEG00000012751	srsf5b	100	99.336	Poecilia_mexicana
ENSGAFG00000002865	srsf5b	100	99.336	ENSPREG00000010381	srsf5b	100	99.336	Poecilia_reticulata
ENSGAFG00000002865	srsf5b	50	80.392	ENSPCAG00000004405	SRSF5	100	78.289	Procavia_capensis
ENSGAFG00000002865	srsf5b	100	82.781	ENSPNYG00000002669	srsf5b	94	99.219	Pundamilia_nyererei
ENSGAFG00000002865	srsf5b	63	93.651	ENSPNAG00000011262	srsf5b	84	93.750	Pygocentrus_nattereri
ENSGAFG00000002865	srsf5b	61	82.703	ENSRBIG00000013003	SRSF5	94	72.830	Rhinopithecus_bieti
ENSGAFG00000002865	srsf5b	61	82.703	ENSRROG00000043407	SRSF5	94	72.830	Rhinopithecus_roxellana
ENSGAFG00000002865	srsf5b	61	82.703	ENSSBOG00000030784	SRSF5	94	72.830	Saimiri_boliviensis_boliviensis
ENSGAFG00000002865	srsf5b	63	82.292	ENSSHAG00000002871	SRSF5	96	72.794	Sarcophilus_harrisii
ENSGAFG00000002865	srsf5b	90	81.879	ENSSMAG00000019728	srsf5b	91	82.373	Scophthalmus_maximus
ENSGAFG00000002865	srsf5b	86	93.487	ENSSDUG00000005766	srsf5b	92	93.487	Seriola_dumerili
ENSGAFG00000002865	srsf5b	89	93.309	ENSSLDG00000023255	srsf5b	92	93.309	Seriola_lalandi_dorsalis
ENSGAFG00000002865	srsf5b	61	70.811	ENSSARG00000001059	SRSF5	92	57.308	Sorex_araneus
ENSGAFG00000002865	srsf5b	61	84.127	ENSSPUG00000002464	SRSF5	96	69.825	Sphenodon_punctatus
ENSGAFG00000002865	srsf5b	89	94.052	ENSSPAG00000015325	srsf5b	92	94.052	Stegastes_partitus
ENSGAFG00000002865	srsf5b	61	82.065	ENSTGUG00000011425	SRSF5	94	73.106	Taeniopygia_guttata
ENSGAFG00000002865	srsf5b	62	93.617	ENSTRUG00000017811	srsf5b	95	74.497	Takifugu_rubripes
ENSGAFG00000002865	srsf5b	91	82.182	ENSTNIG00000016411	srsf5b	95	83.271	Tetraodon_nigroviridis
ENSGAFG00000002865	srsf5b	63	79.688	ENSTBEG00000001972	SRSF5	96	68.727	Tupaia_belangeri
ENSGAFG00000002865	srsf5b	63	81.169	ENSUMAG00000009827	SRSF5	96	65.818	Ursus_maritimus
ENSGAFG00000002865	srsf5b	62	82.979	ENSXETG00000002211	srsf5	94	73.507	Xenopus_tropicalis
ENSGAFG00000002865	srsf5b	100	90.066	ENSXCOG00000001570	srsf5b	100	94.040	Xiphophorus_couchianus
ENSGAFG00000002865	srsf5b	100	98.675	ENSXMAG00000026416	srsf5b	100	98.675	Xiphophorus_maculatus