EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000003154 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 3600 bases
Position: chrNHOQ01001766.1:3425034-3428633
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000004619	zf-C2H2	PF00096.26	6.9e-21	1	3
ENSGAFP00000004619	zf-C2H2	PF00096.26	6.9e-21	2	3
ENSGAFP00000004619	zf-C2H2	PF00096.26	6.9e-21	3	3
ENSGAFP00000004619	zf-met	PF12874.7	6e-07	1	2
ENSGAFP00000004619	zf-met	PF12874.7	6e-07	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000004676	-	2226	-	ENSGAFP00000004619	419 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000003154's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000003154's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000003154	-	86	43.810	ENSGAFG00000020501	-	88	43.810
ENSGAFG00000003154	-	50	46.154	ENSGAFG00000011290	-	69	46.154
ENSGAFG00000003154	-	64	44.706	ENSGAFG00000013624	-	60	44.706
ENSGAFG00000003154	-	50	46.226	ENSGAFG00000013677	-	95	45.872
ENSGAFG00000003154	-	52	41.818	ENSGAFG00000002659	-	71	41.818
ENSGAFG00000003154	-	57	43.333	ENSGAFG00000014369	-	99	44.262
ENSGAFG00000003154	-	55	45.872	ENSGAFG00000013934	-	98	44.954
ENSGAFG00000003154	-	55	47.126	ENSGAFG00000008204	-	86	47.126

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000003154	-	55	44.762	ENSATEG00000008771	-	67	44.762	Anabas_testudineus
ENSGAFG00000003154	-	51	46.789	ENSAMXG00000042174	-	90	47.664	Astyanax_mexicanus
ENSGAFG00000003154	-	56	47.500	ENSAMXG00000035437	-	97	47.500	Astyanax_mexicanus
ENSGAFG00000003154	-	52	45.872	ENSAMXG00000039016	-	87	45.872	Astyanax_mexicanus
ENSGAFG00000003154	-	53	49.091	ENSCPBG00000005586	-	63	49.091	Chrysemys_picta_bellii
ENSGAFG00000003154	-	83	44.186	ENSEBUG00000016292	-	85	44.186	Eptatretus_burgeri
ENSGAFG00000003154	-	51	43.902	ENSELUG00000017463	-	87	52.000	Esox_lucius
ENSGAFG00000003154	-	53	51.613	ENSELUG00000013245	-	83	51.613	Esox_lucius
ENSGAFG00000003154	-	58	51.087	ENSELUG00000012597	-	98	51.087	Esox_lucius
ENSGAFG00000003154	-	66	44.944	ENSFHEG00000016640	-	82	45.000	Fundulus_heteroclitus
ENSGAFG00000003154	-	66	49.474	ENSHCOG00000010212	-	96	49.474	Hippocampus_comes
ENSGAFG00000003154	-	54	40.506	ENSHCOG00000014855	-	60	40.506	Hippocampus_comes
ENSGAFG00000003154	-	52	45.833	ENSHCOG00000008234	-	70	45.833	Hippocampus_comes
ENSGAFG00000003154	-	57	41.525	ENSNBRG00000003250	-	89	43.137	Neolamprologus_brichardi
ENSGAFG00000003154	-	58	50.000	ENSPFOG00000005463	-	96	48.624	Poecilia_formosa
ENSGAFG00000003154	-	66	50.794	ENSPFOG00000024470	-	77	49.123	Poecilia_formosa
ENSGAFG00000003154	-	100	94.286	ENSPLAG00000009659	-	100	94.286	Poecilia_latipinna
ENSGAFG00000003154	-	100	95.476	ENSPMEG00000024345	-	100	95.476	Poecilia_mexicana
ENSGAFG00000003154	-	55	50.459	ENSPNAG00000012206	-	92	50.459	Pygocentrus_nattereri
ENSGAFG00000003154	-	57	49.438	ENSSLDG00000005850	-	91	49.438	Seriola_lalandi_dorsalis
ENSGAFG00000003154	-	66	39.623	ENSSPAG00000005739	-	63	39.623	Stegastes_partitus
ENSGAFG00000003154	-	100	95.714	ENSXMAG00000025208	-	100	95.714	Xiphophorus_maculatus
ENSGAFG00000003154	-	58	49.206	ENSXMAG00000026679	-	98	49.206	Xiphophorus_maculatus