EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000003329 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 302597 bases
Position: chrNHOQ01002733.1:1041591-1344187
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000004933	RRM_1	PF00076.22	2.6e-31	1	2
ENSGAFP00000004933	RRM_1	PF00076.22	2.6e-31	2	2
ENSGAFP00000004952	RRM_1	PF00076.22	4.1e-31	1	2
ENSGAFP00000004952	RRM_1	PF00076.22	4.1e-31	2	2
ENSGAFP00000004915	RRM_1	PF00076.22	5.1e-31	1	2
ENSGAFP00000004915	RRM_1	PF00076.22	5.1e-31	2	2
ENSGAFP00000004947	RRM_1	PF00076.22	5.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000005010	-	2027	-	ENSGAFP00000004952	483 (aa)	-	-
ENSGAFT00000004991	-	1251	-	ENSGAFP00000004933	416 (aa)	-	-
ENSGAFT00000004973	-	2137	-	ENSGAFP00000004915	519 (aa)	-	-
ENSGAFT00000005005	-	1182	-	ENSGAFP00000004947	393 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000003329's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000003329's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000003329	-	77	61.801	ENSGAFG00000011633	rbms1a	90	60.486
ENSGAFG00000003329	-	88	73.425	ENSGAFG00000002548	rbms2a	94	72.679
ENSGAFG00000003329	-	53	36.250	ENSGAFG00000002765	celf5a	51	36.250
ENSGAFG00000003329	-	78	73.476	ENSGAFG00000009648	rbms2b	80	73.193
ENSGAFG00000003329	-	88	67.380	ENSGAFG00000007708	RBMS1	89	67.018
ENSGAFG00000003329	-	99	83.373	ENSGAFG00000000168	rbms3	99	83.373

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000003329	-	99	88.361	ENSG00000144642	RBMS3	100	90.152	Homo_sapiens
ENSGAFG00000003329	-	99	73.961	ENSAPOG00000007266	rbms3	93	82.124	Acanthochromis_polyacanthus
ENSGAFG00000003329	-	100	99.281	ENSAPOG00000003432	-	100	99.281	Acanthochromis_polyacanthus
ENSGAFG00000003329	-	69	84.211	ENSAMEG00000005947	RBMS3	99	84.211	Ailuropoda_melanoleuca
ENSGAFG00000003329	-	88	74.044	ENSACIG00000021113	RBMS3	98	73.016	Amphilophus_citrinellus
ENSGAFG00000003329	-	78	96.933	ENSACIG00000006987	-	89	96.933	Amphilophus_citrinellus
ENSGAFG00000003329	-	99	82.160	ENSAOCG00000021274	rbms3	99	82.160	Amphiprion_ocellaris
ENSGAFG00000003329	-	98	96.098	ENSAOCG00000024104	-	100	91.743	Amphiprion_ocellaris
ENSGAFG00000003329	-	100	90.887	ENSAPEG00000009481	-	100	90.887	Amphiprion_percula
ENSGAFG00000003329	-	82	83.569	ENSAPEG00000016299	rbms3	88	86.269	Amphiprion_percula
ENSGAFG00000003329	-	99	82.547	ENSATEG00000024295	rbms3	99	83.019	Anabas_testudineus
ENSGAFG00000003329	-	100	99.041	ENSATEG00000008433	-	100	99.041	Anabas_testudineus
ENSGAFG00000003329	-	99	86.480	ENSAPLG00000012270	RBMS3	99	85.781	Anas_platyrhynchos
ENSGAFG00000003329	-	99	88.571	ENSACAG00000028664	RBMS3	99	88.571	Anolis_carolinensis
ENSGAFG00000003329	-	99	85.714	ENSANAG00000021899	RBMS3	99	85.714	Aotus_nancymaae
ENSGAFG00000003329	-	100	90.000	ENSACLG00000008976	-	100	89.603	Astatotilapia_calliptera
ENSGAFG00000003329	-	99	81.797	ENSACLG00000018506	rbms3	99	82.270	Astatotilapia_calliptera
ENSGAFG00000003329	-	99	90.602	ENSAMXG00000020388	rbms3	99	90.602	Astyanax_mexicanus
ENSGAFG00000003329	-	62	87.209	ENSAMXG00000043770	-	100	87.209	Astyanax_mexicanus
ENSGAFG00000003329	-	99	88.599	ENSBTAG00000044062	RBMS3	99	88.599	Bos_taurus
ENSGAFG00000003329	-	99	85.714	ENSCJAG00000004312	RBMS3	99	85.714	Callithrix_jacchus
ENSGAFG00000003329	-	99	85.126	ENSCAFG00000005464	RBMS3	99	85.126	Canis_familiaris
ENSGAFG00000003329	-	99	85.126	ENSCAFG00020024980	RBMS3	99	85.126	Canis_lupus_dingo
ENSGAFG00000003329	-	99	88.124	ENSCHIG00000009144	RBMS3	99	88.124	Capra_hircus
ENSGAFG00000003329	-	76	85.801	ENSTSYG00000002615	RBMS3	99	85.801	Carlito_syrichta
ENSGAFG00000003329	-	88	83.607	ENSCAPG00000017783	RBMS3	95	82.888	Cavia_aperea
ENSGAFG00000003329	-	99	88.702	ENSCPOG00000006457	RBMS3	99	88.702	Cavia_porcellus
ENSGAFG00000003329	-	99	85.714	ENSCCAG00000008671	RBMS3	99	85.714	Cebus_capucinus
ENSGAFG00000003329	-	100	85.355	ENSCATG00000013222	RBMS3	100	85.355	Cercocebus_atys
ENSGAFG00000003329	-	99	87.886	ENSCLAG00000005866	RBMS3	99	87.886	Chinchilla_lanigera
ENSGAFG00000003329	-	65	87.823	ENSCSAG00000009655	RBMS3	99	87.823	Chlorocebus_sabaeus
ENSGAFG00000003329	-	87	88.000	ENSCHOG00000000758	RBMS3	86	88.000	Choloepus_hoffmanni
ENSGAFG00000003329	-	99	88.810	ENSCPBG00000022678	RBMS3	99	88.810	Chrysemys_picta_bellii
ENSGAFG00000003329	-	99	85.484	ENSCANG00000032137	RBMS3	99	85.484	Colobus_angolensis_palliatus
ENSGAFG00000003329	-	99	86.298	ENSCGRG00001007243	Rbms3	99	86.298	Cricetulus_griseus_chok1gshd
ENSGAFG00000003329	-	99	86.298	ENSCGRG00000004599	Rbms3	99	86.298	Cricetulus_griseus_crigri
ENSGAFG00000003329	-	99	82.118	ENSCSEG00000010011	RBMS3	99	82.588	Cynoglossus_semilaevis
ENSGAFG00000003329	-	100	97.122	ENSCSEG00000014677	-	94	99.588	Cynoglossus_semilaevis
ENSGAFG00000003329	-	99	83.571	ENSCVAG00000022354	rbms3	99	84.048	Cyprinodon_variegatus
ENSGAFG00000003329	-	100	99.279	ENSCVAG00000022814	-	100	99.476	Cyprinodon_variegatus
ENSGAFG00000003329	-	99	89.880	ENSDARG00000044574	rbms3	95	95.620	Danio_rerio
ENSGAFG00000003329	-	99	87.648	ENSDNOG00000016645	RBMS3	96	87.648	Dasypus_novemcinctus
ENSGAFG00000003329	-	99	87.411	ENSDORG00000007220	Rbms3	99	87.411	Dipodomys_ordii
ENSGAFG00000003329	-	87	83.333	ENSETEG00000009485	-	80	70.571	Echinops_telfairi
ENSGAFG00000003329	-	67	54.122	ENSEBUG00000005830	rbms3	86	55.263	Eptatretus_burgeri
ENSGAFG00000003329	-	99	88.124	ENSEASG00005006152	RBMS3	99	88.124	Equus_asinus_asinus
ENSGAFG00000003329	-	99	88.124	ENSECAG00000017871	RBMS3	99	88.124	Equus_caballus
ENSGAFG00000003329	-	90	79.345	ENSEEUG00000014337	RBMS3	100	79.345	Erinaceus_europaeus
ENSGAFG00000003329	-	92	96.606	ENSELUG00000006905	-	98	98.354	Esox_lucius
ENSGAFG00000003329	-	99	80.142	ENSELUG00000002862	rbms3	99	80.142	Esox_lucius
ENSGAFG00000003329	-	99	87.886	ENSFCAG00000002130	RBMS3	99	87.886	Felis_catus
ENSGAFG00000003329	-	99	89.048	ENSFALG00000009165	RBMS3	99	89.048	Ficedula_albicollis
ENSGAFG00000003329	-	99	87.411	ENSFDAG00000008278	RBMS3	99	87.411	Fukomys_damarensis
ENSGAFG00000003329	-	91	73.766	ENSFHEG00000004787	RBMS3	94	76.022	Fundulus_heteroclitus
ENSGAFG00000003329	-	90	88.945	ENSGMOG00000002600	-	96	88.945	Gadus_morhua
ENSGAFG00000003329	-	99	89.048	ENSGALG00000011439	RBMS3	99	89.048	Gallus_gallus
ENSGAFG00000003329	-	65	88.235	ENSGAGG00000004039	RBMS3	99	88.235	Gopherus_agassizii
ENSGAFG00000003329	-	99	85.714	ENSGGOG00000007228	RBMS3	99	85.714	Gorilla_gorilla
ENSGAFG00000003329	-	63	85.874	ENSHBUG00000021196	rbms3	94	85.874	Haplochromis_burtoni
ENSGAFG00000003329	-	100	98.404	ENSHBUG00000019785	-	96	94.240	Haplochromis_burtoni
ENSGAFG00000003329	-	99	87.886	ENSHGLG00000002170	RBMS3	99	87.886	Heterocephalus_glaber_female
ENSGAFG00000003329	-	99	87.886	ENSHGLG00100014278	RBMS3	99	87.886	Heterocephalus_glaber_male
ENSGAFG00000003329	-	100	97.362	ENSHCOG00000007894	-	100	97.362	Hippocampus_comes
ENSGAFG00000003329	-	99	90.120	ENSIPUG00000017680	rbms3	99	90.120	Ictalurus_punctatus
ENSGAFG00000003329	-	99	88.361	ENSSTOG00000006324	RBMS3	99	88.361	Ictidomys_tridecemlineatus
ENSGAFG00000003329	-	99	84.323	ENSJJAG00000014708	Rbms3	99	84.561	Jaculus_jaculus
ENSGAFG00000003329	-	99	81.075	ENSKMAG00000020500	rbms3	99	81.075	Kryptolebias_marmoratus
ENSGAFG00000003329	-	100	98.561	ENSKMAG00000012586	-	100	98.561	Kryptolebias_marmoratus
ENSGAFG00000003329	-	61	75.094	ENSLBEG00000006677	rbms3	97	75.094	Labrus_bergylta
ENSGAFG00000003329	-	100	97.842	ENSLBEG00000027388	-	100	97.842	Labrus_bergylta
ENSGAFG00000003329	-	99	90.692	ENSLACG00000010581	RBMS3	99	90.692	Latimeria_chalumnae
ENSGAFG00000003329	-	69	92.069	ENSLOCG00000002328	rbms3	99	92.069	Lepisosteus_oculatus
ENSGAFG00000003329	-	99	84.897	ENSLAFG00000000354	RBMS3	99	84.897	Loxodonta_africana
ENSGAFG00000003329	-	99	88.124	ENSMFAG00000033300	RBMS3	99	88.124	Macaca_fascicularis
ENSGAFG00000003329	-	99	88.124	ENSMMUG00000004404	RBMS3	99	88.124	Macaca_mulatta
ENSGAFG00000003329	-	99	85.484	ENSMNEG00000035839	RBMS3	99	85.484	Macaca_nemestrina
ENSGAFG00000003329	-	100	85.355	ENSMLEG00000029464	RBMS3	100	85.355	Mandrillus_leucophaeus
ENSGAFG00000003329	-	99	82.824	ENSMAMG00000024043	rbms3	99	83.294	Mastacembelus_armatus
ENSGAFG00000003329	-	100	98.469	ENSMAMG00000002176	-	100	98.469	Mastacembelus_armatus
ENSGAFG00000003329	-	100	95.794	ENSMZEG00005026469	-	96	95.794	Maylandia_zebra
ENSGAFG00000003329	-	99	81.797	ENSMZEG00005006308	rbms3	99	82.270	Maylandia_zebra
ENSGAFG00000003329	-	99	86.298	ENSMAUG00000016436	Rbms3	99	86.298	Mesocricetus_auratus
ENSGAFG00000003329	-	99	85.714	ENSMICG00000049249	RBMS3	99	85.714	Microcebus_murinus
ENSGAFG00000003329	-	99	86.058	ENSMOCG00000006997	Rbms3	99	86.058	Microtus_ochrogaster
ENSGAFG00000003329	-	100	97.122	ENSMMOG00000015071	-	100	97.122	Mola_mola
ENSGAFG00000003329	-	82	84.046	ENSMMOG00000008471	RBMS3	90	87.425	Mola_mola
ENSGAFG00000003329	-	99	80.899	ENSMODG00000015125	RBMS3	99	80.178	Monodelphis_domestica
ENSGAFG00000003329	-	99	82.353	ENSMALG00000019536	RBMS3	99	80.660	Monopterus_albus
ENSGAFG00000003329	-	100	98.321	ENSMALG00000009155	-	100	98.321	Monopterus_albus
ENSGAFG00000003329	-	99	85.337	MGP_CAROLIEiJ_G0032783	Rbms3	100	90.338	Mus_caroli
ENSGAFG00000003329	-	99	86.058	ENSMUSG00000039607	Rbms3	100	91.787	Mus_musculus
ENSGAFG00000003329	-	99	85.851	MGP_PahariEiJ_G0015650	Rbms3	100	91.787	Mus_pahari
ENSGAFG00000003329	-	99	86.058	MGP_SPRETEiJ_G0033930	Rbms3	100	91.787	Mus_spretus
ENSGAFG00000003329	-	99	85.126	ENSMPUG00000011956	RBMS3	99	85.126	Mustela_putorius_furo
ENSGAFG00000003329	-	99	88.124	ENSMLUG00000000659	RBMS3	99	88.124	Myotis_lucifugus
ENSGAFG00000003329	-	99	88.221	ENSNGAG00000014039	Rbms3	99	88.221	Nannospalax_galili
ENSGAFG00000003329	-	100	98.321	ENSNBRG00000018065	-	100	98.321	Neolamprologus_brichardi
ENSGAFG00000003329	-	99	85.714	ENSNLEG00000004129	RBMS3	99	85.714	Nomascus_leucogenys
ENSGAFG00000003329	-	99	78.767	ENSMEUG00000004772	RBMS3	99	78.767	Notamacropus_eugenii
ENSGAFG00000003329	-	99	85.219	ENSOPRG00000006808	RBMS3	85	85.219	Ochotona_princeps
ENSGAFG00000003329	-	99	88.361	ENSODEG00000003651	RBMS3	99	88.361	Octodon_degus
ENSGAFG00000003329	-	99	76.485	ENSONIG00000007172	rbms3	99	76.960	Oreochromis_niloticus
ENSGAFG00000003329	-	99	86.143	ENSOANG00000010529	RBMS3	99	86.143	Ornithorhynchus_anatinus
ENSGAFG00000003329	-	99	84.439	ENSOCUG00000004840	RBMS3	99	84.439	Oryctolagus_cuniculus
ENSGAFG00000003329	-	100	97.602	ENSORLG00000002306	-	100	97.602	Oryzias_latipes
ENSGAFG00000003329	-	99	81.235	ENSORLG00000005370	RBMS3	99	81.235	Oryzias_latipes
ENSGAFG00000003329	-	99	80.998	ENSORLG00020022674	RBMS3	99	80.998	Oryzias_latipes_hni
ENSGAFG00000003329	-	100	97.842	ENSORLG00020008496	-	100	97.842	Oryzias_latipes_hni
ENSGAFG00000003329	-	99	81.473	ENSORLG00015005509	rbms3	99	81.473	Oryzias_latipes_hsok
ENSGAFG00000003329	-	100	97.842	ENSORLG00015015719	-	100	97.842	Oryzias_latipes_hsok
ENSGAFG00000003329	-	97	95.545	ENSOMEG00000007677	-	100	97.389	Oryzias_melastigma
ENSGAFG00000003329	-	99	81.948	ENSOMEG00000014805	RBMS3	99	81.948	Oryzias_melastigma
ENSGAFG00000003329	-	99	84.439	ENSOARG00000014684	RBMS3	99	84.439	Ovis_aries
ENSGAFG00000003329	-	99	85.714	ENSPPAG00000036519	RBMS3	99	85.714	Pan_paniscus
ENSGAFG00000003329	-	99	85.023	ENSPPRG00000002761	RBMS3	99	85.023	Panthera_pardus
ENSGAFG00000003329	-	99	87.648	ENSPTIG00000011568	RBMS3	99	87.648	Panthera_tigris_altaica
ENSGAFG00000003329	-	99	88.361	ENSPTRG00000014709	RBMS3	99	88.361	Pan_troglodytes
ENSGAFG00000003329	-	100	85.355	ENSPANG00000010234	RBMS3	100	85.355	Papio_anubis
ENSGAFG00000003329	-	50	93.750	ENSPKIG00000016025	-	86	81.028	Paramormyrops_kingsleyae
ENSGAFG00000003329	-	62	92.636	ENSPKIG00000007989	-	100	92.636	Paramormyrops_kingsleyae
ENSGAFG00000003329	-	99	88.333	ENSPSIG00000005269	RBMS3	99	88.333	Pelodiscus_sinensis
ENSGAFG00000003329	-	92	98.429	ENSPMGG00000021683	-	100	98.429	Periophthalmus_magnuspinnatus
ENSGAFG00000003329	-	82	83.668	ENSPMGG00000021544	rbms3	86	86.103	Periophthalmus_magnuspinnatus
ENSGAFG00000003329	-	99	83.373	ENSPEMG00000001117	Rbms3	99	83.373	Peromyscus_maniculatus_bairdii
ENSGAFG00000003329	-	83	90.028	ENSPCIG00000006106	RBMS3	89	89.720	Phascolarctos_cinereus
ENSGAFG00000003329	-	99	83.610	ENSPFOG00000017887	rbms3	99	83.610	Poecilia_formosa
ENSGAFG00000003329	-	77	81.620	ENSPLAG00000016866	-	82	81.620	Poecilia_latipinna
ENSGAFG00000003329	-	100	99.519	ENSPMEG00000002993	-	100	99.519	Poecilia_mexicana
ENSGAFG00000003329	-	100	97.110	ENSPREG00000018221	-	97	97.110	Poecilia_reticulata
ENSGAFG00000003329	-	100	81.754	ENSPREG00000011880	rbms3	100	82.227	Poecilia_reticulata
ENSGAFG00000003329	-	99	72.082	ENSPPYG00000014050	RBMS3	82	72.082	Pongo_abelii
ENSGAFG00000003329	-	99	65.675	ENSPCAG00000006307	RBMS3	99	65.675	Procavia_capensis
ENSGAFG00000003329	-	99	85.945	ENSPCOG00000017136	RBMS3	99	85.945	Propithecus_coquereli
ENSGAFG00000003329	-	89	88.000	ENSPVAG00000014037	RBMS3	99	75.973	Pteropus_vampyrus
ENSGAFG00000003329	-	99	81.560	ENSPNYG00000010546	rbms3	99	82.033	Pundamilia_nyererei
ENSGAFG00000003329	-	100	98.561	ENSPNYG00000012624	-	100	98.561	Pundamilia_nyererei
ENSGAFG00000003329	-	99	90.602	ENSPNAG00000001800	rbms3	99	90.602	Pygocentrus_nattereri
ENSGAFG00000003329	-	99	86.298	ENSRNOG00000025881	Rbms3	99	86.298	Rattus_norvegicus
ENSGAFG00000003329	-	99	85.253	ENSRBIG00000035863	RBMS3	99	85.253	Rhinopithecus_bieti
ENSGAFG00000003329	-	88	86.842	ENSRROG00000027512	RBMS3	94	85.788	Rhinopithecus_roxellana
ENSGAFG00000003329	-	99	85.714	ENSSBOG00000020232	RBMS3	99	85.714	Saimiri_boliviensis_boliviensis
ENSGAFG00000003329	-	88	83.651	ENSSHAG00000002411	RBMS3	95	82.574	Sarcophilus_harrisii
ENSGAFG00000003329	-	100	94.724	ENSSFOG00015008578	rbms3	100	94.724	Scleropages_formosus
ENSGAFG00000003329	-	97	93.300	ENSSMAG00000020065	-	94	98.271	Scophthalmus_maximus
ENSGAFG00000003329	-	99	78.873	ENSSMAG00000004997	rbms3	99	83.060	Scophthalmus_maximus
ENSGAFG00000003329	-	100	99.281	ENSSDUG00000019287	-	100	99.281	Seriola_dumerili
ENSGAFG00000003329	-	99	82.353	ENSSDUG00000013656	RBMS3	99	82.824	Seriola_dumerili
ENSGAFG00000003329	-	99	82.009	ENSSLDG00000020276	RBMS3	99	82.477	Seriola_lalandi_dorsalis
ENSGAFG00000003329	-	100	99.281	ENSSLDG00000013224	-	100	99.281	Seriola_lalandi_dorsalis
ENSGAFG00000003329	-	78	74.636	ENSSARG00000000695	RBMS3	94	73.714	Sorex_araneus
ENSGAFG00000003329	-	69	87.031	ENSSPUG00000017197	RBMS3	97	85.906	Sphenodon_punctatus
ENSGAFG00000003329	-	99	81.925	ENSSPAG00000020693	rbms3	99	82.394	Stegastes_partitus
ENSGAFG00000003329	-	94	98.985	ENSSPAG00000003983	-	100	90.826	Stegastes_partitus
ENSGAFG00000003329	-	99	87.886	ENSSSCG00000036381	RBMS3	99	87.886	Sus_scrofa
ENSGAFG00000003329	-	76	86.364	ENSTGUG00000003572	RBMS3	99	85.758	Taeniopygia_guttata
ENSGAFG00000003329	-	100	86.936	ENSTRUG00000007482	-	100	87.112	Takifugu_rubripes
ENSGAFG00000003329	-	99	80.471	ENSTRUG00000021719	RBMS3	99	80.471	Takifugu_rubripes
ENSGAFG00000003329	-	78	88.047	ENSTBEG00000005362	RBMS3	94	86.857	Tupaia_belangeri
ENSGAFG00000003329	-	99	84.439	ENSTTRG00000006202	RBMS3	99	84.439	Tursiops_truncatus
ENSGAFG00000003329	-	99	85.126	ENSUMAG00000000263	RBMS3	99	85.126	Ursus_maritimus
ENSGAFG00000003329	-	88	76.240	ENSVPAG00000003842	RBMS3	94	75.641	Vicugna_pacos
ENSGAFG00000003329	-	88	86.684	ENSVVUG00000004660	RBMS3	94	92.202	Vulpes_vulpes
ENSGAFG00000003329	-	70	82.237	ENSXETG00000032055	RBMS3	98	82.237	Xenopus_tropicalis
ENSGAFG00000003329	-	92	83.763	ENSXCOG00000019600	-	100	83.763	Xiphophorus_couchianus
ENSGAFG00000003329	-	99	81.517	ENSXMAG00000021783	rbms3	99	81.517	Xiphophorus_maculatus
ENSGAFG00000003329	-	100	99.760	ENSXMAG00000014382	-	100	99.760	Xiphophorus_maculatus