EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000003395 (Gene tree)
Gene ID: -
Gene Symbol: snrnp70
Alias: U1 small ribonucleoprotein 70kd|snrp70|wu:fc20b04|zgc:136450
Full Name: small nuclear ribonucleoprotein 70 (U1)
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 12243 bases
Position: chrNHOQ01000483.1:26299-38541
Accession: ZDB-GENE-040825-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000005034	RRM_1	PF00076.22	1.2e-19	1	1
ENSGAFP00000005015	RRM_1	PF00076.22	1.3e-19	1	1
ENSGAFP00000005034	U1snRNP70_N	PF12220.8	4e-25	1	1
ENSGAFP00000005015	U1snRNP70_N	PF12220.8	4.1e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000005073	-	2236	-	ENSGAFP00000005015	467 (aa)	-	-
ENSGAFT00000005092	-	1380	-	ENSGAFP00000005034	459 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000003395's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000003395's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000003395	snrnp70	56	74.219	ENSANAG00000036787	SNRNP70	99	88.415	Aotus_nancymaae
ENSGAFG00000003395	snrnp70	55	47.082	WBGene00004390	rnp-7	58	52.577	Caenorhabditis_elegans
ENSGAFG00000003395	snrnp70	57	63.636	ENSEEUG00000005666	SNRNP70	51	69.820	Erinaceus_europaeus
ENSGAFG00000003395	snrnp70	100	86.994	ENSFHEG00000010298	snrnp70	100	88.699	Fundulus_heteroclitus
ENSGAFG00000003395	snrnp70	50	78.000	ENSGACG00000000448	snrnp70	70	95.089	Gasterosteus_aculeatus
ENSGAFG00000003395	snrnp70	100	74.573	ENSHBUG00000018856	snrnp70	100	77.186	Haplochromis_burtoni
ENSGAFG00000003395	snrnp70	54	83.465	ENSLAFG00000028536	SNRNP70	96	91.892	Loxodonta_africana
ENSGAFG00000003395	snrnp70	100	75.796	ENSMAMG00000004556	snrnp70	100	80.892	Mastacembelus_armatus
ENSGAFG00000003395	snrnp70	100	74.200	ENSMZEG00005022849	snrnp70	100	77.021	Maylandia_zebra
ENSGAFG00000003395	snrnp70	57	82.197	ENSMICG00000038437	SNRNP70	99	88.415	Microcebus_murinus
ENSGAFG00000003395	snrnp70	74	83.526	ENSMALG00000002275	snrnp70	89	81.798	Monopterus_albus
ENSGAFG00000003395	snrnp70	100	78.891	ENSOMEG00000013002	snrnp70	100	75.375	Oryzias_melastigma
ENSGAFG00000003395	snrnp70	56	64.844	ENSPSIG00000015251	SNRNP70	88	78.222	Pelodiscus_sinensis
ENSGAFG00000003395	snrnp70	100	97.645	ENSPFOG00000016671	snrnp70	100	97.645	Poecilia_formosa
ENSGAFG00000003395	snrnp70	100	97.430	ENSPLAG00000005912	snrnp70	100	97.430	Poecilia_latipinna
ENSGAFG00000003395	snrnp70	100	97.645	ENSPMEG00000008496	snrnp70	100	97.645	Poecilia_mexicana
ENSGAFG00000003395	snrnp70	100	97.216	ENSPREG00000005486	snrnp70	100	97.216	Poecilia_reticulata
ENSGAFG00000003395	snrnp70	57	73.106	ENSPCOG00000023103	SNRNP70	79	83.784	Propithecus_coquereli
ENSGAFG00000003395	snrnp70	100	74.414	ENSPNYG00000003258	snrnp70	100	77.021	Pundamilia_nyererei
ENSGAFG00000003395	snrnp70	100	72.234	ENSSMAG00000013978	snrnp70	71	94.472	Scophthalmus_maximus
ENSGAFG00000003395	snrnp70	52	85.600	ENSSPUG00000016621	SNRNP70	52	92.342	Sphenodon_punctatus
ENSGAFG00000003395	snrnp70	100	71.429	ENSTRUG00000009202	snrnp70	100	71.215	Takifugu_rubripes
ENSGAFG00000003395	snrnp70	100	88.528	ENSXCOG00000008991	snrnp70	100	88.312	Xiphophorus_couchianus
ENSGAFG00000003395	snrnp70	100	97.655	ENSXMAG00000012789	snrnp70	100	97.655	Xiphophorus_maculatus