EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000003642 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: RAB5CL|RABL
Full Name: -
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 8898 bases
Position: chrNHOQ01001904.1:1863001-1871898
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000005338	MMR_HSR1	PF01926.23	0.00018	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000005398	-	2114	-	ENSGAFP00000005338	223 (aa)	-	UPI000DD1A92A

Gene Model

Click here to download ENSGAFG00000003642's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000003642's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000003642	-	89	33.981	ENSGAFG00000004099	rab9b	82	34.555
ENSGAFG00000003642	-	72	43.478	ENSGAFG00000005477	rab4a	76	43.478
ENSGAFG00000003642	-	73	46.012	ENSGAFG00000005679	rab11ba	74	46.584
ENSGAFG00000003642	-	74	39.766	ENSGAFG00000021202	zgc:101559	73	39.766
ENSGAFG00000003642	-	71	33.742	ENSGAFG00000020102	si:dkey-13a21.4	79	33.742
ENSGAFG00000003642	-	91	40.594	ENSGAFG00000017270	rab6ba	89	42.473
ENSGAFG00000003642	-	99	82.805	ENSGAFG00000011619	rab5aa	95	87.440
ENSGAFG00000003642	-	89	36.318	ENSGAFG00000005388	si:dkey-16l2.16	76	40.881
ENSGAFG00000003642	-	91	40.099	ENSGAFG00000010916	rab6bb	93	39.899
ENSGAFG00000003642	-	72	38.554	ENSGAFG00000015490	rab33a	60	38.554
ENSGAFG00000003642	-	70	32.298	ENSGAFG00000012579	rab34a	60	32.298
ENSGAFG00000003642	-	72	30.435	ENSGAFG00000010541	rras	81	30.435
ENSGAFG00000003642	-	73	37.195	ENSGAFG00000002141	rab42a	75	37.195
ENSGAFG00000003642	-	83	49.462	ENSGAFG00000001301	rab22a	95	49.462
ENSGAFG00000003642	-	75	37.288	ENSGAFG00000000591	rab9a	81	37.288
ENSGAFG00000003642	-	77	43.605	ENSGAFG00000014787	-	87	42.529
ENSGAFG00000003642	-	72	39.752	ENSGAFG00000002756	rab15	76	39.752
ENSGAFG00000003642	-	78	34.637	ENSGAFG00000015249	-	69	34.637
ENSGAFG00000003642	-	89	39.806	ENSGAFG00000015702	zgc:171927	71	42.614
ENSGAFG00000003642	-	89	41.584	ENSGAFG00000021725	rab11al	73	49.045
ENSGAFG00000003642	-	76	45.402	ENSGAFG00000021724	rab25b	84	45.402
ENSGAFG00000003642	-	77	47.429	ENSGAFG00000011713	rab25a	91	43.784
ENSGAFG00000003642	-	87	32.143	ENSGAFG00000015135	rab36	62	35.000
ENSGAFG00000003642	-	89	43.939	ENSGAFG00000000918	-	90	44.809
ENSGAFG00000003642	-	73	46.626	ENSGAFG00000016549	rab11a	76	46.626
ENSGAFG00000003642	-	75	44.643	ENSGAFG00000020309	rab30	88	44.643
ENSGAFG00000003642	-	89	42.929	ENSGAFG00000019305	rab1ba	92	42.553
ENSGAFG00000003642	-	74	37.576	ENSGAFG00000017305	RAB15	78	43.103
ENSGAFG00000003642	-	74	35.294	ENSGAFG00000018916	-	75	35.838
ENSGAFG00000003642	-	89	42.157	ENSGAFG00000007102	rab11bb	75	46.626
ENSGAFG00000003642	-	89	43.434	ENSGAFG00000001289	rab1ab	86	45.402
ENSGAFG00000003642	-	88	38.579	ENSGAFG00000014730	-	79	44.025
ENSGAFG00000003642	-	78	31.844	ENSGAFG00000021814	hrasb	94	31.844
ENSGAFG00000003642	-	91	40.099	ENSGAFG00000006356	rab6a	80	44.910
ENSGAFG00000003642	-	69	38.562	ENSGAFG00000005188	rabl2	67	38.562
ENSGAFG00000003642	-	90	41.827	ENSGAFG00000008560	rab18b	90	43.011
ENSGAFG00000003642	-	78	38.144	ENSGAFG00000019659	rab33ba	79	37.696
ENSGAFG00000003642	-	99	88.739	ENSGAFG00000000884	rab5c	95	90.909
ENSGAFG00000003642	-	74	41.765	ENSGAFG00000020476	RAB7A	82	41.765
ENSGAFG00000003642	-	72	33.125	ENSGAFG00000007684	rab23	74	35.526
ENSGAFG00000003642	-	74	36.145	ENSGAFG00000004604	RAB39B	77	36.585
ENSGAFG00000003642	-	74	36.145	ENSGAFG00000006932	-	77	36.585
ENSGAFG00000003642	-	73	36.145	ENSGAFG00000008183	si:dkey-34d22.5	75	36.145
ENSGAFG00000003642	-	75	44.311	ENSGAFG00000019872	rab41	82	43.605
ENSGAFG00000003642	-	69	31.169	ENSGAFG00000020906	rheb	84	31.818
ENSGAFG00000003642	-	54	30.645	ENSGAFG00000008497	arl8bb	63	30.645
ENSGAFG00000003642	-	74	32.121	ENSGAFG00000021765	kras	89	31.361
ENSGAFG00000003642	-	78	42.857	ENSGAFG00000002790	rab18a	87	43.575
ENSGAFG00000003642	-	89	30.918	ENSGAFG00000000629	RAB29	81	32.934
ENSGAFG00000003642	-	74	41.765	ENSGAFG00000021688	-	82	41.765
ENSGAFG00000003642	-	89	39.614	ENSGAFG00000006846	rab2a	79	41.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000003642	-	99	88.182	ENSG00000108774	RAB5C	100	95.200	Homo_sapiens
ENSGAFG00000003642	-	99	88.739	ENSAPOG00000016864	rab5c	95	91.866	Acanthochromis_polyacanthus
ENSGAFG00000003642	-	99	87.783	ENSAMEG00000006003	RAB5C	96	90.952	Ailuropoda_melanoleuca
ENSGAFG00000003642	-	99	88.739	ENSACIG00000010896	rab5c	95	90.909	Amphilophus_citrinellus
ENSGAFG00000003642	-	99	88.739	ENSAOCG00000016614	rab5c	95	91.866	Amphiprion_ocellaris
ENSGAFG00000003642	-	98	88.128	ENSAPEG00000017868	-	94	91.262	Amphiprion_percula
ENSGAFG00000003642	-	99	88.288	ENSATEG00000001937	rab5c	95	91.388	Anabas_testudineus
ENSGAFG00000003642	-	92	91.748	ENSANAG00000025390	RAB5C	100	91.748	Aotus_nancymaae
ENSGAFG00000003642	-	99	87.387	ENSACLG00000002706	rab5c	95	89.474	Astatotilapia_calliptera
ENSGAFG00000003642	-	97	91.204	ENSACLG00000008615	-	95	94.286	Astatotilapia_calliptera
ENSGAFG00000003642	-	95	87.678	ENSAMXG00000037267	-	95	91.000	Astyanax_mexicanus
ENSGAFG00000003642	-	99	89.686	ENSAMXG00000043717	rab5c	95	91.905	Astyanax_mexicanus
ENSGAFG00000003642	-	99	88.182	ENSBTAG00000006982	RAB5C	96	90.952	Bos_taurus
ENSGAFG00000003642	-	99	73.636	WBGene00004268	rab-5	90	81.053	Caenorhabditis_elegans
ENSGAFG00000003642	-	99	87.783	ENSCAFG00000015629	RAB5C	96	90.952	Canis_familiaris
ENSGAFG00000003642	-	99	87.783	ENSCAFG00020013537	RAB5C	96	90.952	Canis_lupus_dingo
ENSGAFG00000003642	-	99	88.182	ENSCHIG00000012960	RAB5C	96	90.952	Capra_hircus
ENSGAFG00000003642	-	99	88.636	ENSTSYG00000030531	RAB5C	96	91.429	Carlito_syrichta
ENSGAFG00000003642	-	99	88.182	ENSCCAG00000025940	RAB5C	96	90.952	Cebus_capucinus
ENSGAFG00000003642	-	99	88.182	ENSCATG00000040873	RAB5C	96	90.952	Cercocebus_atys
ENSGAFG00000003642	-	99	88.636	ENSCLAG00000016650	RAB5C	96	90.952	Chinchilla_lanigera
ENSGAFG00000003642	-	80	94.413	ENSCHOG00000009886	RAB5C	100	94.413	Choloepus_hoffmanni
ENSGAFG00000003642	-	100	73.991	ENSCING00000003340	-	92	77.941	Ciona_intestinalis
ENSGAFG00000003642	-	99	71.930	ENSCSAVG00000000613	-	99	80.368	Ciona_savignyi
ENSGAFG00000003642	-	99	88.182	ENSCGRG00001014226	Rab5c	96	90.952	Cricetulus_griseus_chok1gshd
ENSGAFG00000003642	-	99	88.182	ENSCGRG00000007534	Rab5c	96	90.952	Cricetulus_griseus_crigri
ENSGAFG00000003642	-	99	88.739	ENSCSEG00000017024	rab5c	95	91.388	Cynoglossus_semilaevis
ENSGAFG00000003642	-	99	89.640	ENSCVAG00000009550	rab5c	95	92.344	Cyprinodon_variegatus
ENSGAFG00000003642	-	99	88.182	ENSDNOG00000038853	RAB5C	96	90.952	Dasypus_novemcinctus
ENSGAFG00000003642	-	99	88.636	ENSDORG00000006819	Rab5c	96	91.429	Dipodomys_ordii
ENSGAFG00000003642	-	96	71.759	FBgn0014010	Rab5	94	74.038	Drosophila_melanogaster
ENSGAFG00000003642	-	88	81.218	ENSEBUG00000014794	rab5c	91	82.292	Eptatretus_burgeri
ENSGAFG00000003642	-	99	87.783	ENSEASG00005009281	RAB5C	96	90.952	Equus_asinus_asinus
ENSGAFG00000003642	-	99	88.636	ENSECAG00000025054	RAB5C	96	91.429	Equus_caballus
ENSGAFG00000003642	-	99	88.182	ENSEEUG00000002790	RAB5C	96	90.952	Erinaceus_europaeus
ENSGAFG00000003642	-	99	88.636	ENSELUG00000018516	rab5c	96	90.909	Esox_lucius
ENSGAFG00000003642	-	99	85.586	ENSELUG00000010439	-	95	87.560	Esox_lucius
ENSGAFG00000003642	-	99	88.182	ENSFCAG00000002148	RAB5C	96	90.952	Felis_catus
ENSGAFG00000003642	-	99	87.273	ENSFDAG00000021541	RAB5C	96	89.524	Fukomys_damarensis
ENSGAFG00000003642	-	100	93.274	ENSFHEG00000015268	-	95	96.651	Fundulus_heteroclitus
ENSGAFG00000003642	-	99	88.288	ENSFHEG00000012117	rab5c	95	90.909	Fundulus_heteroclitus
ENSGAFG00000003642	-	99	88.288	ENSGMOG00000015096	rab5c	95	90.909	Gadus_morhua
ENSGAFG00000003642	-	76	88.757	ENSGMOG00000001876	-	98	88.757	Gadus_morhua
ENSGAFG00000003642	-	99	85.973	ENSGACG00000008659	rab5c	93	89.320	Gasterosteus_aculeatus
ENSGAFG00000003642	-	99	88.182	ENSGGOG00000005472	RAB5C	96	90.952	Gorilla_gorilla
ENSGAFG00000003642	-	99	87.387	ENSHBUG00000002014	rab5c	95	89.474	Haplochromis_burtoni
ENSGAFG00000003642	-	97	91.204	ENSHBUG00000006823	-	95	94.286	Haplochromis_burtoni
ENSGAFG00000003642	-	99	87.727	ENSHGLG00000012067	RAB5C	96	89.952	Heterocephalus_glaber_female
ENSGAFG00000003642	-	99	89.238	ENSHCOG00000004662	rab5c	93	91.905	Hippocampus_comes
ENSGAFG00000003642	-	96	82.710	ENSHCOG00000020238	-	95	86.058	Hippocampus_comes
ENSGAFG00000003642	-	96	86.854	ENSIPUG00000020082	rab5c	95	89.573	Ictalurus_punctatus
ENSGAFG00000003642	-	99	88.182	ENSSTOG00000006620	RAB5C	96	90.952	Ictidomys_tridecemlineatus
ENSGAFG00000003642	-	99	88.636	ENSJJAG00000021181	Rab5c	96	91.429	Jaculus_jaculus
ENSGAFG00000003642	-	100	92.377	ENSKMAG00000017417	-	95	95.215	Kryptolebias_marmoratus
ENSGAFG00000003642	-	99	88.288	ENSKMAG00000020038	rab5c	95	90.909	Kryptolebias_marmoratus
ENSGAFG00000003642	-	99	91.818	ENSLBEG00000010408	-	95	94.737	Labrus_bergylta
ENSGAFG00000003642	-	99	89.640	ENSLBEG00000004128	rab5c	95	91.866	Labrus_bergylta
ENSGAFG00000003642	-	99	87.273	ENSLOCG00000012566	rab5c	97	90.431	Lepisosteus_oculatus
ENSGAFG00000003642	-	99	88.182	ENSMFAG00000039627	RAB5C	96	90.952	Macaca_fascicularis
ENSGAFG00000003642	-	99	88.182	ENSMNEG00000000355	RAB5C	96	90.952	Macaca_nemestrina
ENSGAFG00000003642	-	99	88.288	ENSMAMG00000022322	rab5c	95	90.431	Mastacembelus_armatus
ENSGAFG00000003642	-	100	90.135	ENSMAMG00000016207	-	95	93.301	Mastacembelus_armatus
ENSGAFG00000003642	-	97	91.204	ENSMZEG00005021090	-	95	94.286	Maylandia_zebra
ENSGAFG00000003642	-	99	87.387	ENSMZEG00005022735	rab5c	95	89.474	Maylandia_zebra
ENSGAFG00000003642	-	99	88.636	ENSMAUG00000015005	Rab5c	96	91.429	Mesocricetus_auratus
ENSGAFG00000003642	-	99	88.636	ENSMICG00000041608	RAB5C	96	91.429	Microcebus_murinus
ENSGAFG00000003642	-	99	88.636	ENSMOCG00000018531	-	96	91.429	Microtus_ochrogaster
ENSGAFG00000003642	-	99	87.783	ENSMMOG00000020621	rab5c	95	90.431	Mola_mola
ENSGAFG00000003642	-	99	81.081	ENSMALG00000006052	rab5c	95	82.775	Monopterus_albus
ENSGAFG00000003642	-	100	89.238	ENSMALG00000022348	-	95	92.344	Monopterus_albus
ENSGAFG00000003642	-	99	89.091	MGP_CAROLIEiJ_G0017184	Rab5c	96	91.905	Mus_caroli
ENSGAFG00000003642	-	99	89.091	ENSMUSG00000019173	Rab5c	96	91.905	Mus_musculus
ENSGAFG00000003642	-	99	89.091	MGP_PahariEiJ_G0018314	Rab5c	96	91.905	Mus_pahari
ENSGAFG00000003642	-	99	89.091	MGP_SPRETEiJ_G0018027	Rab5c	96	91.905	Mus_spretus
ENSGAFG00000003642	-	99	87.783	ENSMPUG00000010554	RAB5C	96	90.952	Mustela_putorius_furo
ENSGAFG00000003642	-	99	88.182	ENSNGAG00000010286	Rab5c	96	90.952	Nannospalax_galili
ENSGAFG00000003642	-	99	88.288	ENSNBRG00000018165	rab5c	95	90.431	Neolamprologus_brichardi
ENSGAFG00000003642	-	97	91.204	ENSNBRG00000016922	-	95	94.286	Neolamprologus_brichardi
ENSGAFG00000003642	-	80	88.268	ENSOPRG00000008255	RAB5C	100	88.268	Ochotona_princeps
ENSGAFG00000003642	-	99	88.182	ENSODEG00000017920	RAB5C	96	90.476	Octodon_degus
ENSGAFG00000003642	-	99	88.739	ENSONIG00000001113	rab5c	95	90.909	Oreochromis_niloticus
ENSGAFG00000003642	-	99	86.937	ENSORLG00000003882	rab5c	95	89.952	Oryzias_latipes
ENSGAFG00000003642	-	99	87.330	ENSORLG00020008388	rab5c	95	89.952	Oryzias_latipes_hni
ENSGAFG00000003642	-	99	86.937	ENSORLG00015021900	rab5c	95	89.952	Oryzias_latipes_hsok
ENSGAFG00000003642	-	99	86.937	ENSOMEG00000023078	rab5c	95	89.952	Oryzias_melastigma
ENSGAFG00000003642	-	99	88.636	ENSOGAG00000009456	RAB5C	96	91.429	Otolemur_garnettii
ENSGAFG00000003642	-	99	88.182	ENSOARG00000018768	RAB5C	96	90.952	Ovis_aries
ENSGAFG00000003642	-	99	88.182	ENSPPAG00000037206	RAB5C	96	90.952	Pan_paniscus
ENSGAFG00000003642	-	99	88.182	ENSPPRG00000005745	RAB5C	96	90.952	Panthera_pardus
ENSGAFG00000003642	-	99	88.182	ENSPTIG00000008177	RAB5C	96	90.952	Panthera_tigris_altaica
ENSGAFG00000003642	-	99	88.182	ENSPTRG00000009194	RAB5C	96	90.952	Pan_troglodytes
ENSGAFG00000003642	-	99	85.455	ENSPKIG00000001237	-	96	88.517	Paramormyrops_kingsleyae
ENSGAFG00000003642	-	99	85.000	ENSPKIG00000020112	-	96	88.038	Paramormyrops_kingsleyae
ENSGAFG00000003642	-	97	88.889	ENSPMGG00000010792	rab5c	94	91.133	Periophthalmus_magnuspinnatus
ENSGAFG00000003642	-	99	88.636	ENSPEMG00000017971	Rab5c	96	91.429	Peromyscus_maniculatus_bairdii
ENSGAFG00000003642	-	99	74.661	ENSPMAG00000001399	rab5c	94	80.808	Petromyzon_marinus
ENSGAFG00000003642	-	88	82.143	ENSPMAG00000007867	rab5c	91	82.990	Petromyzon_marinus
ENSGAFG00000003642	-	85	84.615	ENSPMAG00000000008	rab5c	89	84.615	Petromyzon_marinus
ENSGAFG00000003642	-	99	86.425	ENSPCIG00000020225	-	96	89.952	Phascolarctos_cinereus
ENSGAFG00000003642	-	99	88.739	ENSPLAG00000004790	rab5c	95	90.909	Poecilia_latipinna
ENSGAFG00000003642	-	100	96.413	ENSPLAG00000016333	-	100	96.413	Poecilia_latipinna
ENSGAFG00000003642	-	99	88.739	ENSPMEG00000011336	rab5c	95	90.909	Poecilia_mexicana
ENSGAFG00000003642	-	100	96.413	ENSPMEG00000012614	-	100	96.413	Poecilia_mexicana
ENSGAFG00000003642	-	99	88.739	ENSPREG00000010146	rab5c	95	90.909	Poecilia_reticulata
ENSGAFG00000003642	-	85	94.709	ENSPREG00000022167	-	91	95.187	Poecilia_reticulata
ENSGAFG00000003642	-	99	88.182	ENSPPYG00000008398	RAB5C	96	90.952	Pongo_abelii
ENSGAFG00000003642	-	99	87.273	ENSPCAG00000016412	RAB5C	96	90.000	Procavia_capensis
ENSGAFG00000003642	-	99	88.182	ENSPCOG00000026327	RAB5C	96	90.952	Propithecus_coquereli
ENSGAFG00000003642	-	99	88.636	ENSPVAG00000003867	RAB5C	96	91.429	Pteropus_vampyrus
ENSGAFG00000003642	-	97	91.204	ENSPNYG00000015851	-	95	94.286	Pundamilia_nyererei
ENSGAFG00000003642	-	99	87.387	ENSPNYG00000010615	rab5c	95	89.474	Pundamilia_nyererei
ENSGAFG00000003642	-	99	89.238	ENSPNAG00000028138	rab5c	95	91.429	Pygocentrus_nattereri
ENSGAFG00000003642	-	96	87.793	ENSPNAG00000002218	-	94	91.500	Pygocentrus_nattereri
ENSGAFG00000003642	-	99	88.636	ENSRNOG00000018568	Rab5c	96	91.429	Rattus_norvegicus
ENSGAFG00000003642	-	99	88.182	ENSRBIG00000031376	RAB5C	96	90.952	Rhinopithecus_bieti
ENSGAFG00000003642	-	99	88.182	ENSRROG00000032895	RAB5C	96	90.952	Rhinopithecus_roxellana
ENSGAFG00000003642	-	99	88.182	ENSSBOG00000032552	-	96	90.952	Saimiri_boliviensis_boliviensis
ENSGAFG00000003642	-	99	87.273	ENSSHAG00000005267	-	96	90.431	Sarcophilus_harrisii
ENSGAFG00000003642	-	99	84.545	ENSSFOG00015009988	-	95	87.081	Scleropages_formosus
ENSGAFG00000003642	-	94	90.431	ENSSMAG00000007323	rab5c	95	90.431	Scophthalmus_maximus
ENSGAFG00000003642	-	99	88.739	ENSSDUG00000023008	rab5c	95	90.909	Seriola_dumerili
ENSGAFG00000003642	-	99	87.838	ENSSLDG00000017771	rab5c	95	89.952	Seriola_lalandi_dorsalis
ENSGAFG00000003642	-	99	87.273	ENSSPUG00000012950	-	95	90.865	Sphenodon_punctatus
ENSGAFG00000003642	-	99	89.189	ENSSPAG00000006436	rab5c	95	91.388	Stegastes_partitus
ENSGAFG00000003642	-	99	88.182	ENSSSCG00000032467	RAB5C	96	90.952	Sus_scrofa
ENSGAFG00000003642	-	99	88.288	ENSTRUG00000015590	rab5c	95	90.431	Takifugu_rubripes
ENSGAFG00000003642	-	99	87.727	ENSTNIG00000011711	rab5c	94	89.855	Tetraodon_nigroviridis
ENSGAFG00000003642	-	99	88.182	ENSTBEG00000007092	RAB5C	96	90.952	Tupaia_belangeri
ENSGAFG00000003642	-	99	87.330	ENSTTRG00000006673	RAB5C	96	90.476	Tursiops_truncatus
ENSGAFG00000003642	-	99	87.783	ENSUAMG00000024343	RAB5C	96	90.952	Ursus_americanus
ENSGAFG00000003642	-	99	87.783	ENSUMAG00000023270	RAB5C	96	90.952	Ursus_maritimus
ENSGAFG00000003642	-	100	98.655	ENSXCOG00000006300	-	100	98.655	Xiphophorus_couchianus
ENSGAFG00000003642	-	99	89.189	ENSXCOG00000016788	rab5c	95	91.388	Xiphophorus_couchianus
ENSGAFG00000003642	-	99	88.739	ENSXMAG00000003266	rab5c	95	90.909	Xiphophorus_maculatus
ENSGAFG00000003642	-	100	98.655	ENSXMAG00000022179	-	100	98.655	Xiphophorus_maculatus