EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000004831 (Gene tree)
Gene ID: -
Gene Symbol: upf1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 17591 bases
Position: chrNHOQ01001911.1:436722-454312
Accession: ZDB-GENE-040426-2836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000007158	UPF1_Zn_bind	PF09416.10	1.6e-74	1	1
ENSGAFP00000007158	ResIII	PF04851.15	3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000007235	-	3294	-	ENSGAFP00000007158	1097 (aa)	-	UPI000DD1AE8D

Gene Model

Click here to download ENSGAFG00000004831's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000004831's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000004831	upf1	63	94.524	ENSGAFG00000015443	-	85	94.524

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000004831	upf1	100	92.143	ENSG00000005007	UPF1	100	92.232	Homo_sapiens
ENSGAFG00000004831	upf1	100	93.103	ENSAPOG00000023773	upf1	100	93.103	Acanthochromis_polyacanthus
ENSGAFG00000004831	upf1	100	98.274	ENSAPOG00000010916	-	100	98.274	Acanthochromis_polyacanthus
ENSGAFG00000004831	upf1	100	91.474	ENSAMEG00000011474	UPF1	100	91.563	Ailuropoda_melanoleuca
ENSGAFG00000004831	upf1	93	97.756	ENSACIG00000010985	-	100	97.756	Amphilophus_citrinellus
ENSGAFG00000004831	upf1	100	93.110	ENSACIG00000019949	upf1	100	93.091	Amphilophus_citrinellus
ENSGAFG00000004831	upf1	100	98.183	ENSAOCG00000006352	-	100	98.183	Amphiprion_ocellaris
ENSGAFG00000004831	upf1	100	92.616	ENSAOCG00000018519	upf1	100	92.616	Amphiprion_ocellaris
ENSGAFG00000004831	upf1	100	92.616	ENSAPEG00000016344	upf1	100	92.616	Amphiprion_percula
ENSGAFG00000004831	upf1	100	98.093	ENSAPEG00000006292	-	100	98.093	Amphiprion_percula
ENSGAFG00000004831	upf1	100	98.093	ENSATEG00000016606	-	100	98.093	Anabas_testudineus
ENSGAFG00000004831	upf1	100	91.339	ENSATEG00000017867	upf1	100	91.860	Anabas_testudineus
ENSGAFG00000004831	upf1	95	93.460	ENSAPLG00000009175	UPF1	100	93.460	Anas_platyrhynchos
ENSGAFG00000004831	upf1	95	92.205	ENSANAG00000024107	UPF1	95	92.205	Aotus_nancymaae
ENSGAFG00000004831	upf1	100	98.004	ENSACLG00000022630	-	100	98.004	Astatotilapia_calliptera
ENSGAFG00000004831	upf1	100	93.019	ENSACLG00000007181	upf1	100	93.000	Astatotilapia_calliptera
ENSGAFG00000004831	upf1	100	94.288	ENSAMXG00000042187	upf1	100	93.835	Astyanax_mexicanus
ENSGAFG00000004831	upf1	100	91.489	ENSBTAG00000020922	UPF1	100	91.578	Bos_taurus
ENSGAFG00000004831	upf1	97	49.585	WBGene00004880	smg-2	99	49.401	Caenorhabditis_elegans
ENSGAFG00000004831	upf1	100	91.247	ENSCJAG00000019627	UPF1	100	91.335	Callithrix_jacchus
ENSGAFG00000004831	upf1	100	91.247	ENSCAFG00000014578	UPF1	100	91.335	Canis_familiaris
ENSGAFG00000004831	upf1	100	92.143	ENSCAFG00020012347	UPF1	100	92.232	Canis_lupus_dingo
ENSGAFG00000004831	upf1	100	92.390	ENSCHIG00000011018	UPF1	100	92.480	Capra_hircus
ENSGAFG00000004831	upf1	95	93.346	ENSTSYG00000008877	UPF1	98	93.346	Carlito_syrichta
ENSGAFG00000004831	upf1	96	92.669	ENSCAPG00000005758	UPF1	95	92.776	Cavia_aperea
ENSGAFG00000004831	upf1	100	92.356	ENSCPOG00000025463	UPF1	100	91.906	Cavia_porcellus
ENSGAFG00000004831	upf1	100	92.143	ENSCCAG00000032175	UPF1	100	92.232	Cebus_capucinus
ENSGAFG00000004831	upf1	94	93.792	ENSCATG00000040306	UPF1	97	93.792	Cercocebus_atys
ENSGAFG00000004831	upf1	95	93.536	ENSCLAG00000004037	UPF1	99	93.061	Chinchilla_lanigera
ENSGAFG00000004831	upf1	100	92.143	ENSCSAG00000005276	UPF1	100	92.232	Chlorocebus_sabaeus
ENSGAFG00000004831	upf1	100	92.370	ENSCPBG00000012513	UPF1	100	92.370	Chrysemys_picta_bellii
ENSGAFG00000004831	upf1	77	79.508	ENSCING00000021399	-	99	78.429	Ciona_intestinalis
ENSGAFG00000004831	upf1	99	73.129	ENSCSAVG00000006533	-	99	73.129	Ciona_savignyi
ENSGAFG00000004831	upf1	95	93.536	ENSCANG00000029819	UPF1	97	93.536	Colobus_angolensis_palliatus
ENSGAFG00000004831	upf1	100	91.928	ENSCGRG00001021067	Upf1	100	91.570	Cricetulus_griseus_chok1gshd
ENSGAFG00000004831	upf1	95	92.871	ENSCGRG00000013480	Upf1	98	92.395	Cricetulus_griseus_crigri
ENSGAFG00000004831	upf1	100	88.171	ENSCSEG00000017239	upf1	100	88.193	Cynoglossus_semilaevis
ENSGAFG00000004831	upf1	100	97.725	ENSCSEG00000016159	-	100	97.725	Cynoglossus_semilaevis
ENSGAFG00000004831	upf1	100	99.183	ENSCVAG00000010561	upf1	100	99.183	Cyprinodon_variegatus
ENSGAFG00000004831	upf1	100	94.016	ENSDARG00000016302	upf1	100	94.288	Danio_rerio
ENSGAFG00000004831	upf1	95	90.970	ENSDORG00000009984	Upf1	95	90.494	Dipodomys_ordii
ENSGAFG00000004831	upf1	86	71.609	FBgn0030354	Upf1	81	71.058	Drosophila_melanogaster
ENSGAFG00000004831	upf1	55	86.281	ENSEBUG00000010069	upf1	96	86.612	Eptatretus_burgeri
ENSGAFG00000004831	upf1	100	92.301	ENSEASG00005006549	UPF1	100	92.390	Equus_asinus_asinus
ENSGAFG00000004831	upf1	100	92.301	ENSECAG00000010639	UPF1	100	92.390	Equus_caballus
ENSGAFG00000004831	upf1	100	94.500	ENSELUG00000012916	-	100	94.500	Esox_lucius
ENSGAFG00000004831	upf1	100	92.509	ENSELUG00000020917	upf1	100	91.968	Esox_lucius
ENSGAFG00000004831	upf1	100	91.158	ENSFCAG00000009757	UPF1	100	91.247	Felis_catus
ENSGAFG00000004831	upf1	95	94.090	ENSFALG00000009312	UPF1	96	93.989	Ficedula_albicollis
ENSGAFG00000004831	upf1	95	93.441	ENSFDAG00000014816	UPF1	99	92.966	Fukomys_damarensis
ENSGAFG00000004831	upf1	100	89.167	ENSFHEG00000006428	upf1	100	88.988	Fundulus_heteroclitus
ENSGAFG00000004831	upf1	86	99.002	ENSFHEG00000016276	-	96	99.002	Fundulus_heteroclitus
ENSGAFG00000004831	upf1	100	94.590	ENSGMOG00000007541	upf1	100	94.775	Gadus_morhua
ENSGAFG00000004831	upf1	100	92.129	ENSGALG00000003220	UPF1	100	92.039	Gallus_gallus
ENSGAFG00000004831	upf1	100	92.696	ENSGAGG00000022217	UPF1	100	92.786	Gopherus_agassizii
ENSGAFG00000004831	upf1	95	94.524	ENSGGOG00000002608	UPF1	99	94.524	Gorilla_gorilla
ENSGAFG00000004831	upf1	91	81.768	ENSHBUG00000014694	upf1	100	89.157	Haplochromis_burtoni
ENSGAFG00000004831	upf1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSGAFG00000004831	upf1	100	90.981	ENSHGLG00000010900	UPF1	100	91.070	Heterocephalus_glaber_female
ENSGAFG00000004831	upf1	95	91.635	ENSHGLG00100005904	UPF1	96	91.635	Heterocephalus_glaber_male
ENSGAFG00000004831	upf1	100	97.636	ENSHCOG00000008918	upf1	100	97.636	Hippocampus_comes
ENSGAFG00000004831	upf1	100	94.288	ENSIPUG00000005108	UPF1	100	93.835	Ictalurus_punctatus
ENSGAFG00000004831	upf1	100	92.143	ENSSTOG00000009196	UPF1	100	91.786	Ictidomys_tridecemlineatus
ENSGAFG00000004831	upf1	100	91.192	ENSJJAG00000023151	Upf1	100	90.836	Jaculus_jaculus
ENSGAFG00000004831	upf1	100	98.728	ENSKMAG00000004962	upf1	100	98.728	Kryptolebias_marmoratus
ENSGAFG00000004831	upf1	100	97.459	ENSLBEG00000027848	-	100	97.459	Labrus_bergylta
ENSGAFG00000004831	upf1	100	91.308	ENSLBEG00000014862	upf1	100	91.756	Labrus_bergylta
ENSGAFG00000004831	upf1	63	94.269	ENSLACG00000008482	UPF1	100	94.269	Latimeria_chalumnae
ENSGAFG00000004831	upf1	100	95.095	ENSLOCG00000002072	upf1	100	95.095	Lepisosteus_oculatus
ENSGAFG00000004831	upf1	100	90.788	ENSLAFG00000014963	UPF1	100	90.877	Loxodonta_africana
ENSGAFG00000004831	upf1	100	91.897	ENSMFAG00000037748	UPF1	100	91.986	Macaca_fascicularis
ENSGAFG00000004831	upf1	100	91.652	ENSMMUG00000023286	UPF1	100	91.741	Macaca_mulatta
ENSGAFG00000004831	upf1	100	91.897	ENSMNEG00000000046	UPF1	100	91.986	Macaca_nemestrina
ENSGAFG00000004831	upf1	95	93.536	ENSMLEG00000028404	UPF1	99	93.536	Mandrillus_leucophaeus
ENSGAFG00000004831	upf1	100	97.550	ENSMAMG00000006231	-	100	97.550	Mastacembelus_armatus
ENSGAFG00000004831	upf1	100	91.682	ENSMAMG00000006229	upf1	100	92.308	Mastacembelus_armatus
ENSGAFG00000004831	upf1	100	91.935	ENSMZEG00005003489	upf1	100	92.273	Maylandia_zebra
ENSGAFG00000004831	upf1	100	98.004	ENSMZEG00005016386	-	100	98.004	Maylandia_zebra
ENSGAFG00000004831	upf1	95	93.067	ENSMGAG00000004745	UPF1	100	93.067	Meleagris_gallopavo
ENSGAFG00000004831	upf1	95	92.871	ENSMAUG00000011398	Upf1	95	92.395	Mesocricetus_auratus
ENSGAFG00000004831	upf1	100	92.054	ENSMICG00000001659	UPF1	100	92.143	Microcebus_murinus
ENSGAFG00000004831	upf1	100	91.030	ENSMOCG00000005699	Upf1	100	90.764	Microtus_ochrogaster
ENSGAFG00000004831	upf1	100	92.343	ENSMMOG00000007881	upf1	100	92.623	Mola_mola
ENSGAFG00000004831	upf1	95	95.789	ENSMMOG00000007537	-	99	95.789	Mola_mola
ENSGAFG00000004831	upf1	100	91.005	ENSMODG00000003689	UPF1	100	91.182	Monodelphis_domestica
ENSGAFG00000004831	upf1	100	92.616	ENSMALG00000000144	upf1	100	92.616	Monopterus_albus
ENSGAFG00000004831	upf1	100	95.928	ENSMALG00000018100	-	100	95.928	Monopterus_albus
ENSGAFG00000004831	upf1	100	91.839	MGP_CAROLIEiJ_G0031142	Upf1	100	91.480	Mus_caroli
ENSGAFG00000004831	upf1	100	91.839	ENSMUSG00000058301	Upf1	100	91.480	Mus_musculus
ENSGAFG00000004831	upf1	100	91.839	MGP_PahariEiJ_G0021607	Upf1	100	91.480	Mus_pahari
ENSGAFG00000004831	upf1	100	91.839	MGP_SPRETEiJ_G0032260	Upf1	100	91.480	Mus_spretus
ENSGAFG00000004831	upf1	100	92.143	ENSMPUG00000015516	UPF1	100	92.232	Mustela_putorius_furo
ENSGAFG00000004831	upf1	99	91.935	ENSMLUG00000012122	UPF1	99	92.025	Myotis_lucifugus
ENSGAFG00000004831	upf1	100	90.700	ENSNGAG00000024107	Upf1	100	90.345	Nannospalax_galili
ENSGAFG00000004831	upf1	100	91.364	ENSNBRG00000000670	upf1	100	91.182	Neolamprologus_brichardi
ENSGAFG00000004831	upf1	100	94.401	ENSNBRG00000022069	-	100	97.087	Neolamprologus_brichardi
ENSGAFG00000004831	upf1	95	87.738	ENSNLEG00000006062	UPF1	99	87.738	Nomascus_leucogenys
ENSGAFG00000004831	upf1	83	88.650	ENSMEUG00000014146	-	83	88.650	Notamacropus_eugenii
ENSGAFG00000004831	upf1	95	87.320	ENSOPRG00000014018	UPF1	99	87.320	Ochotona_princeps
ENSGAFG00000004831	upf1	100	92.529	ENSODEG00000012426	UPF1	100	92.079	Octodon_degus
ENSGAFG00000004831	upf1	100	92.115	ENSONIG00000010452	upf1	100	92.453	Oreochromis_niloticus
ENSGAFG00000004831	upf1	100	98.004	ENSONIG00000012729	-	100	98.004	Oreochromis_niloticus
ENSGAFG00000004831	upf1	100	91.312	ENSOANG00000004568	UPF1	100	91.223	Ornithorhynchus_anatinus
ENSGAFG00000004831	upf1	100	97.366	ENSORLG00000008453	upf1	100	97.366	Oryzias_latipes
ENSGAFG00000004831	upf1	100	97.278	ENSORLG00020014758	upf1	100	97.278	Oryzias_latipes_hni
ENSGAFG00000004831	upf1	100	97.278	ENSORLG00015010165	upf1	100	97.278	Oryzias_latipes_hsok
ENSGAFG00000004831	upf1	100	97.820	ENSOMEG00000003665	upf1	100	97.820	Oryzias_melastigma
ENSGAFG00000004831	upf1	100	92.232	ENSOGAG00000012866	UPF1	100	92.321	Otolemur_garnettii
ENSGAFG00000004831	upf1	96	90.432	ENSOARG00000010739	UPF1	100	90.248	Ovis_aries
ENSGAFG00000004831	upf1	95	93.371	ENSPPAG00000043884	UPF1	96	93.371	Pan_paniscus
ENSGAFG00000004831	upf1	100	91.158	ENSPPRG00000023470	UPF1	100	91.247	Panthera_pardus
ENSGAFG00000004831	upf1	95	92.138	ENSPTIG00000010159	UPF1	99	92.138	Panthera_tigris_altaica
ENSGAFG00000004831	upf1	100	91.897	ENSPTRG00000010721	UPF1	100	91.986	Pan_troglodytes
ENSGAFG00000004831	upf1	100	91.897	ENSPANG00000008847	UPF1	100	91.986	Papio_anubis
ENSGAFG00000004831	upf1	92	94.940	ENSPKIG00000006069	upf1	95	95.871	Paramormyrops_kingsleyae
ENSGAFG00000004831	upf1	70	93.211	ENSPSIG00000009491	UPF1	100	93.211	Pelodiscus_sinensis
ENSGAFG00000004831	upf1	100	90.769	ENSPMGG00000017327	upf1	100	90.950	Periophthalmus_magnuspinnatus
ENSGAFG00000004831	upf1	100	91.030	ENSPEMG00000001085	Upf1	100	90.675	Peromyscus_maniculatus_bairdii
ENSGAFG00000004831	upf1	100	87.805	ENSPMAG00000001206	upf1	100	87.805	Petromyzon_marinus
ENSGAFG00000004831	upf1	100	92.404	ENSPCIG00000006156	UPF1	100	92.493	Phascolarctos_cinereus
ENSGAFG00000004831	upf1	100	99.909	ENSPLAG00000016232	-	100	99.909	Poecilia_latipinna
ENSGAFG00000004831	upf1	100	90.999	ENSPLAG00000018155	-	100	90.369	Poecilia_latipinna
ENSGAFG00000004831	upf1	100	91.568	ENSPMEG00000011443	-	100	91.439	Poecilia_mexicana
ENSGAFG00000004831	upf1	100	99.818	ENSPMEG00000016319	-	100	99.818	Poecilia_mexicana
ENSGAFG00000004831	upf1	100	99.635	ENSPREG00000011247	-	100	99.635	Poecilia_reticulata
ENSGAFG00000004831	upf1	100	91.285	ENSPREG00000009940	upf1	100	90.925	Poecilia_reticulata
ENSGAFG00000004831	upf1	100	86.384	ENSPPYG00000009752	UPF1	100	86.372	Pongo_abelii
ENSGAFG00000004831	upf1	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSGAFG00000004831	upf1	100	91.644	ENSPCOG00000023813	UPF1	100	91.733	Propithecus_coquereli
ENSGAFG00000004831	upf1	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSGAFG00000004831	upf1	100	98.004	ENSPNYG00000016731	-	100	98.004	Pundamilia_nyererei
ENSGAFG00000004831	upf1	100	91.935	ENSPNYG00000003694	upf1	100	92.273	Pundamilia_nyererei
ENSGAFG00000004831	upf1	100	94.016	ENSPNAG00000025614	upf1	100	93.563	Pygocentrus_nattereri
ENSGAFG00000004831	upf1	100	91.839	ENSRNOG00000020134	Upf1	100	91.480	Rattus_norvegicus
ENSGAFG00000004831	upf1	95	91.160	ENSRBIG00000013894	UPF1	98	94.420	Rhinopithecus_bieti
ENSGAFG00000004831	upf1	95	93.536	ENSRROG00000040935	UPF1	98	94.420	Rhinopithecus_roxellana
ENSGAFG00000004831	upf1	73	57.822	YMR080C	NAM7	84	57.038	Saccharomyces_cerevisiae
ENSGAFG00000004831	upf1	94	93.792	ENSSBOG00000023632	UPF1	96	93.792	Saimiri_boliviensis_boliviensis
ENSGAFG00000004831	upf1	95	93.454	ENSSHAG00000010499	UPF1	100	93.454	Sarcophilus_harrisii
ENSGAFG00000004831	upf1	100	95.100	ENSSFOG00015021095	upf1	100	95.100	Scleropages_formosus
ENSGAFG00000004831	upf1	100	91.129	ENSSMAG00000005055	upf1	100	91.756	Scophthalmus_maximus
ENSGAFG00000004831	upf1	100	97.913	ENSSMAG00000021018	-	100	97.913	Scophthalmus_maximus
ENSGAFG00000004831	upf1	100	91.503	ENSSDUG00000013320	upf1	100	92.397	Seriola_dumerili
ENSGAFG00000004831	upf1	100	98.094	ENSSDUG00000009629	-	100	98.094	Seriola_dumerili
ENSGAFG00000004831	upf1	100	98.094	ENSSLDG00000006878	-	100	98.094	Seriola_lalandi_dorsalis
ENSGAFG00000004831	upf1	100	92.329	ENSSLDG00000020868	upf1	100	92.870	Seriola_lalandi_dorsalis
ENSGAFG00000004831	upf1	100	92.529	ENSSPUG00000010538	UPF1	100	92.619	Sphenodon_punctatus
ENSGAFG00000004831	upf1	100	90.628	ENSSPAG00000000003	upf1	100	90.901	Stegastes_partitus
ENSGAFG00000004831	upf1	100	98.182	ENSSPAG00000011521	-	100	98.182	Stegastes_partitus
ENSGAFG00000004831	upf1	100	92.301	ENSSSCG00000039301	UPF1	99	94.247	Sus_scrofa
ENSGAFG00000004831	upf1	83	86.489	ENSTGUG00000001057	UPF1	100	90.533	Taeniopygia_guttata
ENSGAFG00000004831	upf1	100	96.815	ENSTRUG00000005131	-	100	96.815	Takifugu_rubripes
ENSGAFG00000004831	upf1	100	92.532	ENSTRUG00000000150	upf1	100	92.532	Takifugu_rubripes
ENSGAFG00000004831	upf1	100	88.809	ENSTTRG00000011544	UPF1	100	88.809	Tursiops_truncatus
ENSGAFG00000004831	upf1	100	92.054	ENSUAMG00000007093	UPF1	100	92.143	Ursus_americanus
ENSGAFG00000004831	upf1	95	94.247	ENSUMAG00000006652	UPF1	99	94.922	Ursus_maritimus
ENSGAFG00000004831	upf1	100	92.143	ENSVVUG00000007797	UPF1	100	92.232	Vulpes_vulpes
ENSGAFG00000004831	upf1	100	79.559	ENSXETG00000013602	upf1	100	79.559	Xenopus_tropicalis
ENSGAFG00000004831	upf1	97	91.509	ENSXCOG00000015275	-	96	91.415	Xiphophorus_couchianus
ENSGAFG00000004831	upf1	94	99.903	ENSXCOG00000005764	-	100	99.903	Xiphophorus_couchianus
ENSGAFG00000004831	upf1	100	99.818	ENSXMAG00000002540	-	100	99.818	Xiphophorus_maculatus
ENSGAFG00000004831	upf1	100	91.705	ENSXMAG00000001703	-	100	91.613	Xiphophorus_maculatus