EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000004860 (Gene tree)
Gene ID: -
Gene Symbol: si:ch73-63e15.2
Alias: si:dkey-19f23.4
Full Name: strawberry notch homolog 2
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 68094 bases
Position: chrNHOQ01001926.1:6433393-6501486
Accession: 29158
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000007268	ResIII	PF04851.15	1.4e-08	1	1
ENSGAFP00000007239	ResIII	PF04851.15	1.5e-08	1	1
ENSGAFP00000007320	ResIII	PF04851.15	2e-08	1	1
ENSGAFP00000007313	ResIII	PF04851.15	2.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000007391	-	3837	-	ENSGAFP00000007313	1278 (aa)	-	-
ENSGAFT00000007316	-	7507	-	ENSGAFP00000007239	1344 (aa)	-	-
ENSGAFT00000007346	-	7426	-	ENSGAFP00000007268	1317 (aa)	-	-
ENSGAFT00000007398	-	7205	-	ENSGAFP00000007320	1260 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000004860's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000004860's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000004860	si:ch73-63e15.2	77	64.399	ENSGAFG00000003960	sbno1	73	64.399

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000004860	si:ch73-63e15.2	91	67.551	ENSG00000064932	SBNO2	89	67.489	Homo_sapiens
ENSGAFG00000004860	si:ch73-63e15.2	93	90.137	ENSAPOG00000003185	si:ch73-63e15.2	96	84.121	Acanthochromis_polyacanthus
ENSGAFG00000004860	si:ch73-63e15.2	93	91.511	ENSAOCG00000016581	si:ch73-63e15.2	98	86.399	Amphiprion_ocellaris
ENSGAFG00000004860	si:ch73-63e15.2	93	91.596	ENSAPEG00000008862	si:ch73-63e15.2	80	90.040	Amphiprion_percula
ENSGAFG00000004860	si:ch73-63e15.2	93	90.026	ENSATEG00000023838	si:ch73-63e15.2	99	86.653	Anabas_testudineus
ENSGAFG00000004860	si:ch73-63e15.2	89	72.097	ENSAPLG00000007158	SBNO2	89	72.184	Anas_platyrhynchos
ENSGAFG00000004860	si:ch73-63e15.2	91	67.095	ENSANAG00000026685	SBNO2	90	66.525	Aotus_nancymaae
ENSGAFG00000004860	si:ch73-63e15.2	93	86.737	ENSACLG00000005090	si:ch73-63e15.2	79	86.737	Astatotilapia_calliptera
ENSGAFG00000004860	si:ch73-63e15.2	93	81.368	ENSAMXG00000015881	si:ch73-63e15.2	85	81.026	Astyanax_mexicanus
ENSGAFG00000004860	si:ch73-63e15.2	91	79.862	ENSAMXG00000018868	sbno2a	96	79.876	Astyanax_mexicanus
ENSGAFG00000004860	si:ch73-63e15.2	91	69.092	ENSBTAG00000020780	SBNO2	88	69.218	Bos_taurus
ENSGAFG00000004860	si:ch73-63e15.2	90	69.592	ENSCAFG00000019543	SBNO2	90	66.507	Canis_familiaris
ENSGAFG00000004860	si:ch73-63e15.2	90	69.592	ENSCAFG00020017115	SBNO2	95	66.507	Canis_lupus_dingo
ENSGAFG00000004860	si:ch73-63e15.2	90	69.464	ENSCHIG00000026127	SBNO2	90	66.292	Capra_hircus
ENSGAFG00000004860	si:ch73-63e15.2	89	66.144	ENSCAPG00000005731	SBNO2	94	66.580	Cavia_aperea
ENSGAFG00000004860	si:ch73-63e15.2	90	66.119	ENSCPOG00000007477	SBNO2	86	66.782	Cavia_porcellus
ENSGAFG00000004860	si:ch73-63e15.2	91	66.781	ENSCCAG00000037518	SBNO2	91	66.723	Cebus_capucinus
ENSGAFG00000004860	si:ch73-63e15.2	91	67.750	ENSCATG00000037046	SBNO2	89	67.489	Cercocebus_atys
ENSGAFG00000004860	si:ch73-63e15.2	91	68.092	ENSCLAG00000010178	SBNO2	99	68.788	Chinchilla_lanigera
ENSGAFG00000004860	si:ch73-63e15.2	88	68.877	ENSCSAG00000012317	SBNO2	90	65.484	Chlorocebus_sabaeus
ENSGAFG00000004860	si:ch73-63e15.2	91	69.580	ENSCPBG00000008920	SBNO2	91	71.254	Chrysemys_picta_bellii
ENSGAFG00000004860	si:ch73-63e15.2	87	67.411	ENSCANG00000036745	SBNO2	95	68.522	Colobus_angolensis_palliatus
ENSGAFG00000004860	si:ch73-63e15.2	90	66.465	ENSCGRG00001023960	Sbno2	85	67.219	Cricetulus_griseus_chok1gshd
ENSGAFG00000004860	si:ch73-63e15.2	90	67.789	ENSCGRG00000011984	Sbno2	85	68.554	Cricetulus_griseus_crigri
ENSGAFG00000004860	si:ch73-63e15.2	91	85.418	ENSCSEG00000006856	si:ch73-63e15.2	96	86.801	Cynoglossus_semilaevis
ENSGAFG00000004860	si:ch73-63e15.2	93	93.862	ENSCVAG00000005663	si:ch73-63e15.2	80	93.263	Cyprinodon_variegatus
ENSGAFG00000004860	si:ch73-63e15.2	92	81.385	ENSDARG00000016188	SBNO2	83	81.126	Danio_rerio
ENSGAFG00000004860	si:ch73-63e15.2	91	78.435	ENSDARG00000098801	sbno2a	91	75.556	Danio_rerio
ENSGAFG00000004860	si:ch73-63e15.2	90	68.696	ENSDORG00000002916	Sbno2	90	66.024	Dipodomys_ordii
ENSGAFG00000004860	si:ch73-63e15.2	91	68.980	ENSEASG00005021621	SBNO2	89	69.606	Equus_asinus_asinus
ENSGAFG00000004860	si:ch73-63e15.2	91	68.895	ENSECAG00000011827	SBNO2	89	69.692	Equus_caballus
ENSGAFG00000004860	si:ch73-63e15.2	91	86.109	ENSELUG00000020457	si:ch73-63e15.2	82	84.647	Esox_lucius
ENSGAFG00000004860	si:ch73-63e15.2	90	71.539	ENSFALG00000013988	SBNO2	87	70.216	Ficedula_albicollis
ENSGAFG00000004860	si:ch73-63e15.2	86	67.087	ENSFDAG00000015186	SBNO2	88	64.962	Fukomys_damarensis
ENSGAFG00000004860	si:ch73-63e15.2	93	94.530	ENSFHEG00000022262	si:ch73-63e15.2	79	94.347	Fundulus_heteroclitus
ENSGAFG00000004860	si:ch73-63e15.2	90	86.065	ENSGMOG00000007542	si:ch73-63e15.2	95	86.065	Gadus_morhua
ENSGAFG00000004860	si:ch73-63e15.2	91	72.147	ENSGALG00000037522	SBNO2	85	72.147	Gallus_gallus
ENSGAFG00000004860	si:ch73-63e15.2	90	88.052	ENSGACG00000013190	si:ch73-63e15.2	96	87.910	Gasterosteus_aculeatus
ENSGAFG00000004860	si:ch73-63e15.2	91	72.458	ENSGAGG00000008348	SBNO2	87	72.373	Gopherus_agassizii
ENSGAFG00000004860	si:ch73-63e15.2	93	86.737	ENSHBUG00000010742	si:ch73-63e15.2	78	87.766	Haplochromis_burtoni
ENSGAFG00000004860	si:ch73-63e15.2	89	68.517	ENSHGLG00000008739	SBNO2	85	68.534	Heterocephalus_glaber_female
ENSGAFG00000004860	si:ch73-63e15.2	91	67.973	ENSHGLG00100005269	SBNO2	99	68.663	Heterocephalus_glaber_male
ENSGAFG00000004860	si:ch73-63e15.2	94	83.675	ENSHCOG00000000884	si:ch73-63e15.2	93	82.773	Hippocampus_comes
ENSGAFG00000004860	si:ch73-63e15.2	90	81.217	ENSIPUG00000000537	si:ch73-63e15.2	85	80.259	Ictalurus_punctatus
ENSGAFG00000004860	si:ch73-63e15.2	91	81.299	ENSIPUG00000019672	sbno2	99	78.803	Ictalurus_punctatus
ENSGAFG00000004860	si:ch73-63e15.2	90	68.261	ENSSTOG00000025832	SBNO2	88	67.276	Ictidomys_tridecemlineatus
ENSGAFG00000004860	si:ch73-63e15.2	90	65.514	ENSJJAG00000017397	Sbno2	91	63.600	Jaculus_jaculus
ENSGAFG00000004860	si:ch73-63e15.2	93	90.403	ENSKMAG00000005541	si:ch73-63e15.2	80	88.517	Kryptolebias_marmoratus
ENSGAFG00000004860	si:ch73-63e15.2	93	89.039	ENSLBEG00000025016	si:ch73-63e15.2	99	88.466	Labrus_bergylta
ENSGAFG00000004860	si:ch73-63e15.2	50	81.053	ENSLBEG00000005937	-	100	81.667	Labrus_bergylta
ENSGAFG00000004860	si:ch73-63e15.2	51	68.127	ENSLACG00000012598	SBNO2	99	72.744	Latimeria_chalumnae
ENSGAFG00000004860	si:ch73-63e15.2	91	84.087	ENSLOCG00000004643	si:ch73-63e15.2	85	84.087	Lepisosteus_oculatus
ENSGAFG00000004860	si:ch73-63e15.2	88	65.722	ENSLAFG00000008824	SBNO2	89	65.606	Loxodonta_africana
ENSGAFG00000004860	si:ch73-63e15.2	91	66.524	ENSMFAG00000040030	SBNO2	91	66.099	Macaca_fascicularis
ENSGAFG00000004860	si:ch73-63e15.2	88	68.877	ENSMMUG00000010886	SBNO2	89	66.496	Macaca_mulatta
ENSGAFG00000004860	si:ch73-63e15.2	91	67.836	ENSMNEG00000039927	SBNO2	90	67.574	Macaca_nemestrina
ENSGAFG00000004860	si:ch73-63e15.2	81	69.452	ENSMLEG00000038556	SBNO2	97	65.739	Mandrillus_leucophaeus
ENSGAFG00000004860	si:ch73-63e15.2	93	89.051	ENSMAMG00000018758	si:ch73-63e15.2	78	89.051	Mastacembelus_armatus
ENSGAFG00000004860	si:ch73-63e15.2	93	86.737	ENSMZEG00005010682	si:ch73-63e15.2	79	86.737	Maylandia_zebra
ENSGAFG00000004860	si:ch73-63e15.2	91	71.745	ENSMGAG00000003801	SBNO2	90	71.745	Meleagris_gallopavo
ENSGAFG00000004860	si:ch73-63e15.2	90	68.435	ENSMAUG00000008034	Sbno2	85	68.897	Mesocricetus_auratus
ENSGAFG00000004860	si:ch73-63e15.2	91	67.549	ENSMICG00000013071	SBNO2	88	68.614	Microcebus_murinus
ENSGAFG00000004860	si:ch73-63e15.2	89	68.174	ENSMOCG00000010504	Sbno2	85	68.641	Microtus_ochrogaster
ENSGAFG00000004860	si:ch73-63e15.2	91	70.342	ENSMODG00000005382	SBNO2	89	67.036	Monodelphis_domestica
ENSGAFG00000004860	si:ch73-63e15.2	78	79.840	ENSMALG00000021831	si:ch73-63e15.2	99	82.049	Monopterus_albus
ENSGAFG00000004860	si:ch73-63e15.2	90	67.418	ENSMUSG00000035673	Sbno2	97	66.250	Mus_musculus
ENSGAFG00000004860	si:ch73-63e15.2	90	67.504	MGP_PahariEiJ_G0030976	Sbno2	88	66.500	Mus_pahari
ENSGAFG00000004860	si:ch73-63e15.2	90	67.591	MGP_SPRETEiJ_G0016381	Sbno2	94	66.333	Mus_spretus
ENSGAFG00000004860	si:ch73-63e15.2	77	71.284	ENSMPUG00000008747	SBNO2	95	69.268	Mustela_putorius_furo
ENSGAFG00000004860	si:ch73-63e15.2	90	67.938	ENSNGAG00000004308	Sbno2	86	68.126	Nannospalax_galili
ENSGAFG00000004860	si:ch73-63e15.2	87	88.241	ENSNBRG00000022968	si:ch73-63e15.2	98	90.876	Neolamprologus_brichardi
ENSGAFG00000004860	si:ch73-63e15.2	85	69.740	ENSNLEG00000001305	SBNO2	89	69.740	Nomascus_leucogenys
ENSGAFG00000004860	si:ch73-63e15.2	73	66.596	ENSMEUG00000013511	-	78	66.596	Notamacropus_eugenii
ENSGAFG00000004860	si:ch73-63e15.2	87	68.356	ENSOPRG00000017238	SBNO2	94	69.014	Ochotona_princeps
ENSGAFG00000004860	si:ch73-63e15.2	89	67.823	ENSODEG00000011822	SBNO2	89	65.705	Octodon_degus
ENSGAFG00000004860	si:ch73-63e15.2	93	86.874	ENSONIG00000002490	si:ch73-63e15.2	92	88.266	Oreochromis_niloticus
ENSGAFG00000004860	si:ch73-63e15.2	93	88.596	ENSORLG00000000913	si:ch73-63e15.2	79	88.596	Oryzias_latipes
ENSGAFG00000004860	si:ch73-63e15.2	93	88.511	ENSORLG00020010978	si:ch73-63e15.2	79	88.511	Oryzias_latipes_hni
ENSGAFG00000004860	si:ch73-63e15.2	93	88.936	ENSORLG00015000202	si:ch73-63e15.2	79	88.936	Oryzias_latipes_hsok
ENSGAFG00000004860	si:ch73-63e15.2	93	87.126	ENSOMEG00000000359	si:ch73-63e15.2	80	86.698	Oryzias_melastigma
ENSGAFG00000004860	si:ch73-63e15.2	90	66.609	ENSOARG00000011130	SBNO2	93	63.820	Ovis_aries
ENSGAFG00000004860	si:ch73-63e15.2	91	66.553	ENSPPAG00000032482	SBNO2	92	66.498	Pan_paniscus
ENSGAFG00000004860	si:ch73-63e15.2	91	67.466	ENSPTRG00000010185	SBNO2	90	67.404	Pan_troglodytes
ENSGAFG00000004860	si:ch73-63e15.2	91	64.328	ENSPANG00000009658	SBNO2	89	64.085	Papio_anubis
ENSGAFG00000004860	si:ch73-63e15.2	80	78.844	ENSPKIG00000009707	-	84	78.828	Paramormyrops_kingsleyae
ENSGAFG00000004860	si:ch73-63e15.2	91	84.091	ENSPKIG00000024201	si:ch73-63e15.2	85	83.106	Paramormyrops_kingsleyae
ENSGAFG00000004860	si:ch73-63e15.2	76	73.529	ENSPSIG00000002852	SBNO2	99	73.631	Pelodiscus_sinensis
ENSGAFG00000004860	si:ch73-63e15.2	94	82.923	ENSPMGG00000014375	si:ch73-63e15.2	93	82.594	Periophthalmus_magnuspinnatus
ENSGAFG00000004860	si:ch73-63e15.2	90	66.318	ENSPEMG00000024122	Sbno2	88	65.017	Peromyscus_maniculatus_bairdii
ENSGAFG00000004860	si:ch73-63e15.2	90	70.476	ENSPCIG00000011264	SBNO2	89	68.101	Phascolarctos_cinereus
ENSGAFG00000004860	si:ch73-63e15.2	93	98.721	ENSPFOG00000004096	si:ch73-63e15.2	100	94.664	Poecilia_formosa
ENSGAFG00000004860	si:ch73-63e15.2	93	99.057	ENSPLAG00000014653	si:ch73-63e15.2	79	98.995	Poecilia_latipinna
ENSGAFG00000004860	si:ch73-63e15.2	93	98.886	ENSPMEG00000002129	si:ch73-63e15.2	96	95.115	Poecilia_mexicana
ENSGAFG00000004860	si:ch73-63e15.2	93	98.641	ENSPREG00000006755	si:ch73-63e15.2	79	98.641	Poecilia_reticulata
ENSGAFG00000004860	si:ch73-63e15.2	81	69.045	ENSPCAG00000012256	SBNO2	77	69.045	Procavia_capensis
ENSGAFG00000004860	si:ch73-63e15.2	91	61.957	ENSPCOG00000015216	SBNO2	88	62.245	Propithecus_coquereli
ENSGAFG00000004860	si:ch73-63e15.2	92	88.291	ENSPNYG00000019926	si:ch73-63e15.2	78	88.291	Pundamilia_nyererei
ENSGAFG00000004860	si:ch73-63e15.2	93	82.137	ENSPNAG00000020260	si:ch73-63e15.2	85	80.799	Pygocentrus_nattereri
ENSGAFG00000004860	si:ch73-63e15.2	91	80.085	ENSPNAG00000026609	sbno2a	99	70.097	Pygocentrus_nattereri
ENSGAFG00000004860	si:ch73-63e15.2	90	68.000	ENSRNOG00000013987	Sbno2	89	68.668	Rattus_norvegicus
ENSGAFG00000004860	si:ch73-63e15.2	84	66.636	ENSRBIG00000009740	SBNO2	88	66.790	Rhinopithecus_bieti
ENSGAFG00000004860	si:ch73-63e15.2	80	70.251	ENSRROG00000044671	SBNO2	87	69.514	Rhinopithecus_roxellana
ENSGAFG00000004860	si:ch73-63e15.2	91	67.038	ENSSBOG00000023562	SBNO2	89	67.237	Saimiri_boliviensis_boliviensis
ENSGAFG00000004860	si:ch73-63e15.2	89	70.557	ENSSHAG00000010241	SBNO2	99	69.666	Sarcophilus_harrisii
ENSGAFG00000004860	si:ch73-63e15.2	93	81.037	ENSSFOG00015005861	si:ch73-63e15.2	95	81.463	Scleropages_formosus
ENSGAFG00000004860	si:ch73-63e15.2	93	90.144	ENSSMAG00000012489	si:ch73-63e15.2	77	89.159	Scophthalmus_maximus
ENSGAFG00000004860	si:ch73-63e15.2	93	90.144	ENSSDUG00000003527	si:ch73-63e15.2	77	89.320	Seriola_dumerili
ENSGAFG00000004860	si:ch73-63e15.2	93	90.144	ENSSLDG00000004623	si:ch73-63e15.2	77	89.320	Seriola_lalandi_dorsalis
ENSGAFG00000004860	si:ch73-63e15.2	93	90.994	ENSSPAG00000017717	si:ch73-63e15.2	77	90.994	Stegastes_partitus
ENSGAFG00000004860	si:ch73-63e15.2	91	68.601	ENSSSCG00000030042	SBNO2	90	68.686	Sus_scrofa
ENSGAFG00000004860	si:ch73-63e15.2	88	86.887	ENSTRUG00000018193	si:ch73-63e15.2	86	88.472	Takifugu_rubripes
ENSGAFG00000004860	si:ch73-63e15.2	82	69.915	ENSUAMG00000006568	SBNO2	93	71.016	Ursus_americanus
ENSGAFG00000004860	si:ch73-63e15.2	90	69.592	ENSVVUG00000022823	SBNO2	89	66.587	Vulpes_vulpes
ENSGAFG00000004860	si:ch73-63e15.2	82	76.566	ENSXETG00000021579	sbno2	91	76.566	Xenopus_tropicalis
ENSGAFG00000004860	si:ch73-63e15.2	78	93.968	ENSXCOG00000009209	si:ch73-63e15.2	94	95.369	Xiphophorus_couchianus
ENSGAFG00000004860	si:ch73-63e15.2	93	99.314	ENSXMAG00000012091	si:ch73-63e15.2	87	99.342	Xiphophorus_maculatus