EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000004903 (Gene tree)
Gene ID: -
Gene Symbol: lsm4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 3374 bases
Position: chrNHOQ01001911.1:460911-464284
Accession: ZDB-GENE-040426-1652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000007213	LSM	PF01423.22	1.8e-16	1	1
ENSGAFP00000007228	LSM	PF01423.22	7e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000007290	-	2056	-	ENSGAFP00000007213	188 (aa)	-	UPI000DD1EC5C
ENSGAFT00000007305	-	399	-	ENSGAFP00000007228	132 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000004903's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000004903's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000004903	lsm4	61	33.735	ENSGAFG00000017286	si:ch73-14h10.2	100	33.663
ENSGAFG00000004903	lsm4	72	31.579	ENSGAFG00000006661	snrpd3l	80	32.381

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000004903	lsm4	55	94.521	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSGAFG00000004903	lsm4	97	85.294	ENSAPOG00000005643	lsm4	100	88.079	Acanthochromis_polyacanthus
ENSGAFG00000004903	lsm4	55	94.521	ENSAMEG00000011162	LSM4	75	82.927	Ailuropoda_melanoleuca
ENSGAFG00000004903	lsm4	97	87.218	ENSAOCG00000006414	lsm4	100	89.865	Amphiprion_ocellaris
ENSGAFG00000004903	lsm4	97	86.567	ENSAPEG00000006238	lsm4	100	89.262	Amphiprion_percula
ENSGAFG00000004903	lsm4	97	85.401	ENSATEG00000016559	lsm4	100	88.158	Anabas_testudineus
ENSGAFG00000004903	lsm4	55	94.521	ENSANAG00000034659	LSM4	98	79.032	Aotus_nancymaae
ENSGAFG00000004903	lsm4	97	88.636	ENSACLG00000022738	lsm4	100	91.156	Astatotilapia_calliptera
ENSGAFG00000004903	lsm4	97	86.822	ENSAMXG00000016932	lsm4	100	91.667	Astyanax_mexicanus
ENSGAFG00000004903	lsm4	55	94.521	ENSBTAG00000008578	LSM4	79	83.065	Bos_taurus
ENSGAFG00000004903	lsm4	52	69.118	WBGene00003078	lsm-4	84	66.019	Caenorhabditis_elegans
ENSGAFG00000004903	lsm4	55	94.521	ENSCJAG00000014171	LSM4	79	83.065	Callithrix_jacchus
ENSGAFG00000004903	lsm4	55	94.521	ENSCAFG00000014900	LSM4	72	83.065	Canis_familiaris
ENSGAFG00000004903	lsm4	55	94.521	ENSCAFG00020012137	LSM4	79	83.065	Canis_lupus_dingo
ENSGAFG00000004903	lsm4	55	94.521	ENSCHIG00000010928	LSM4	75	80.315	Capra_hircus
ENSGAFG00000004903	lsm4	55	93.151	ENSTSYG00000030906	LSM4	79	82.258	Carlito_syrichta
ENSGAFG00000004903	lsm4	55	93.151	ENSCAPG00000014140	LSM4	79	83.065	Cavia_aperea
ENSGAFG00000004903	lsm4	55	93.151	ENSCPOG00000024117	LSM4	79	83.065	Cavia_porcellus
ENSGAFG00000004903	lsm4	55	94.521	ENSCCAG00000036308	LSM4	79	83.065	Cebus_capucinus
ENSGAFG00000004903	lsm4	55	94.521	ENSCATG00000029311	LSM4	98	79.200	Cercocebus_atys
ENSGAFG00000004903	lsm4	55	94.521	ENSCLAG00000010828	LSM4	79	82.258	Chinchilla_lanigera
ENSGAFG00000004903	lsm4	55	94.521	ENSCSAG00000005370	LSM4	79	83.065	Chlorocebus_sabaeus
ENSGAFG00000004903	lsm4	55	95.890	ENSCPBG00000012925	LSM4	96	86.765	Chrysemys_picta_bellii
ENSGAFG00000004903	lsm4	54	90.141	ENSCING00000007519	-	91	78.226	Ciona_intestinalis
ENSGAFG00000004903	lsm4	54	90.141	ENSCSAVG00000008596	-	91	78.226	Ciona_savignyi
ENSGAFG00000004903	lsm4	55	94.521	ENSCANG00000043686	LSM4	98	79.200	Colobus_angolensis_palliatus
ENSGAFG00000004903	lsm4	55	91.781	ENSCGRG00001014436	Lsm4	79	81.452	Cricetulus_griseus_chok1gshd
ENSGAFG00000004903	lsm4	55	91.781	ENSCGRG00000009398	Lsm4	79	81.301	Cricetulus_griseus_crigri
ENSGAFG00000004903	lsm4	97	80.469	ENSCSEG00000016127	lsm4	100	94.406	Cynoglossus_semilaevis
ENSGAFG00000004903	lsm4	97	93.750	ENSCVAG00000010601	lsm4	100	95.804	Cyprinodon_variegatus
ENSGAFG00000004903	lsm4	97	93.750	ENSCVAG00000021828	lsm4	98	95.312	Cyprinodon_variegatus
ENSGAFG00000004903	lsm4	92	81.395	ENSDARG00000023852	lsm4	99	86.806	Danio_rerio
ENSGAFG00000004903	lsm4	55	94.521	ENSDORG00000024225	Lsm4	99	82.857	Dipodomys_ordii
ENSGAFG00000004903	lsm4	62	76.829	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSGAFG00000004903	lsm4	55	93.151	ENSETEG00000007762	-	77	79.817	Echinops_telfairi
ENSGAFG00000004903	lsm4	55	94.521	ENSECAG00000010141	LSM4	51	76.812	Equus_caballus
ENSGAFG00000004903	lsm4	84	90.090	ENSELUG00000012821	lsm4	95	92.800	Esox_lucius
ENSGAFG00000004903	lsm4	55	94.521	ENSFCAG00000040580	LSM4	79	83.065	Felis_catus
ENSGAFG00000004903	lsm4	55	95.890	ENSFALG00000009478	LSM4	96	86.667	Ficedula_albicollis
ENSGAFG00000004903	lsm4	55	94.521	ENSFDAG00000010124	LSM4	79	82.927	Fukomys_damarensis
ENSGAFG00000004903	lsm4	97	77.444	ENSGMOG00000007729	lsm4	99	82.432	Gadus_morhua
ENSGAFG00000004903	lsm4	55	95.890	ENSGALG00000003385	LSM4	96	86.765	Gallus_gallus
ENSGAFG00000004903	lsm4	97	80.000	ENSGACG00000008140	lsm4	100	87.333	Gasterosteus_aculeatus
ENSGAFG00000004903	lsm4	55	95.890	ENSGAGG00000017812	LSM4	96	86.765	Gopherus_agassizii
ENSGAFG00000004903	lsm4	55	94.521	ENSGGOG00000012914	-	98	79.200	Gorilla_gorilla
ENSGAFG00000004903	lsm4	97	89.313	ENSHBUG00000008858	lsm4	96	82.286	Haplochromis_burtoni
ENSGAFG00000004903	lsm4	55	94.521	ENSHGLG00000006568	LSM4	79	83.065	Heterocephalus_glaber_female
ENSGAFG00000004903	lsm4	58	94.805	ENSHGLG00100007894	LSM4	99	97.826	Heterocephalus_glaber_male
ENSGAFG00000004903	lsm4	97	93.750	ENSHCOG00000008819	lsm4	100	95.804	Hippocampus_comes
ENSGAFG00000004903	lsm4	97	86.047	ENSIPUG00000005368	Lsm4	100	90.972	Ictalurus_punctatus
ENSGAFG00000004903	lsm4	55	94.521	ENSSTOG00000016494	LSM4	79	83.065	Ictidomys_tridecemlineatus
ENSGAFG00000004903	lsm4	55	91.781	ENSJJAG00000017420	Lsm4	79	81.452	Jaculus_jaculus
ENSGAFG00000004903	lsm4	97	90.698	ENSKMAG00000005073	lsm4	100	93.056	Kryptolebias_marmoratus
ENSGAFG00000004903	lsm4	97	86.567	ENSLBEG00000027930	lsm4	100	89.262	Labrus_bergylta
ENSGAFG00000004903	lsm4	55	95.890	ENSLACG00000015861	LSM4	99	85.211	Latimeria_chalumnae
ENSGAFG00000004903	lsm4	84	88.393	ENSLOCG00000002025	lsm4	100	88.194	Lepisosteus_oculatus
ENSGAFG00000004903	lsm4	55	93.151	ENSLAFG00000017459	LSM4	78	82.114	Loxodonta_africana
ENSGAFG00000004903	lsm4	55	94.521	ENSMFAG00000031194	LSM4	98	79.200	Macaca_fascicularis
ENSGAFG00000004903	lsm4	55	94.521	ENSMMUG00000004405	LSM4	79	83.065	Macaca_mulatta
ENSGAFG00000004903	lsm4	55	94.521	ENSMNEG00000042899	LSM4	98	79.200	Macaca_nemestrina
ENSGAFG00000004903	lsm4	55	94.521	ENSMLEG00000027948	LSM4	98	79.200	Mandrillus_leucophaeus
ENSGAFG00000004903	lsm4	97	91.406	ENSMAMG00000006190	lsm4	100	93.706	Mastacembelus_armatus
ENSGAFG00000004903	lsm4	97	89.313	ENSMZEG00005016420	lsm4	100	91.781	Maylandia_zebra
ENSGAFG00000004903	lsm4	91	72.951	ENSMGAG00000004976	LSM4	96	82.353	Meleagris_gallopavo
ENSGAFG00000004903	lsm4	64	91.667	ENSMICG00000000222	LSM4	79	82.258	Microcebus_murinus
ENSGAFG00000004903	lsm4	55	91.781	ENSMOCG00000020861	Lsm4	79	81.452	Microtus_ochrogaster
ENSGAFG00000004903	lsm4	55	95.890	ENSMODG00000015044	-	98	83.200	Monodelphis_domestica
ENSGAFG00000004903	lsm4	97	89.062	ENSMALG00000018159	lsm4	100	91.608	Monopterus_albus
ENSGAFG00000004903	lsm4	55	91.781	MGP_CAROLIEiJ_G0031158	Lsm4	79	81.452	Mus_caroli
ENSGAFG00000004903	lsm4	55	91.781	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSGAFG00000004903	lsm4	55	91.781	MGP_PahariEiJ_G0021623	Lsm4	79	81.452	Mus_pahari
ENSGAFG00000004903	lsm4	55	91.781	MGP_SPRETEiJ_G0032276	Lsm4	79	81.452	Mus_spretus
ENSGAFG00000004903	lsm4	55	94.521	ENSMPUG00000015589	LSM4	79	83.065	Mustela_putorius_furo
ENSGAFG00000004903	lsm4	55	94.521	ENSMLUG00000004010	LSM4	78	82.927	Myotis_lucifugus
ENSGAFG00000004903	lsm4	55	91.781	ENSNGAG00000008644	Lsm4	79	81.452	Nannospalax_galili
ENSGAFG00000004903	lsm4	64	96.429	ENSNBRG00000022150	lsm4	78	73.944	Neolamprologus_brichardi
ENSGAFG00000004903	lsm4	55	91.781	ENSMEUG00000013229	LSM4	77	77.064	Notamacropus_eugenii
ENSGAFG00000004903	lsm4	58	96.104	ENSOPRG00000005575	LSM4	98	79.032	Ochotona_princeps
ENSGAFG00000004903	lsm4	55	83.562	ENSODEG00000004519	-	80	74.194	Octodon_degus
ENSGAFG00000004903	lsm4	73	60.000	ENSODEG00000011712	-	98	51.799	Octodon_degus
ENSGAFG00000004903	lsm4	55	94.521	ENSODEG00000020549	-	79	82.258	Octodon_degus
ENSGAFG00000004903	lsm4	97	88.636	ENSONIG00000012724	lsm4	100	91.156	Oreochromis_niloticus
ENSGAFG00000004903	lsm4	55	95.890	ENSOANG00000007434	LSM4	97	79.528	Ornithorhynchus_anatinus
ENSGAFG00000004903	lsm4	97	91.473	ENSORLG00000008391	lsm4	100	93.750	Oryzias_latipes
ENSGAFG00000004903	lsm4	97	90.698	ENSORLG00020014829	lsm4	100	93.056	Oryzias_latipes_hni
ENSGAFG00000004903	lsm4	97	89.922	ENSORLG00015010205	lsm4	100	92.361	Oryzias_latipes_hsok
ENSGAFG00000004903	lsm4	97	91.473	ENSOMEG00000003606	lsm4	100	93.750	Oryzias_melastigma
ENSGAFG00000004903	lsm4	64	91.667	ENSOGAG00000027992	LSM4	75	82.114	Otolemur_garnettii
ENSGAFG00000004903	lsm4	55	94.521	ENSOARG00000012553	LSM4	75	82.927	Ovis_aries
ENSGAFG00000004903	lsm4	55	94.521	ENSPPAG00000044045	-	98	79.200	Pan_paniscus
ENSGAFG00000004903	lsm4	55	94.521	ENSPPRG00000018264	LSM4	79	83.065	Panthera_pardus
ENSGAFG00000004903	lsm4	55	94.521	ENSPTIG00000006306	LSM4	79	82.927	Panthera_tigris_altaica
ENSGAFG00000004903	lsm4	55	94.521	ENSPTRG00000031470	LSM4	98	79.200	Pan_troglodytes
ENSGAFG00000004903	lsm4	55	94.521	ENSPANG00000014399	LSM4	97	74.627	Papio_anubis
ENSGAFG00000004903	lsm4	97	85.271	ENSPKIG00000006154	lsm4	100	88.194	Paramormyrops_kingsleyae
ENSGAFG00000004903	lsm4	55	95.890	ENSPSIG00000012358	LSM4	96	85.926	Pelodiscus_sinensis
ENSGAFG00000004903	lsm4	55	91.781	ENSPEMG00000001358	Lsm4	79	81.452	Peromyscus_maniculatus_bairdii
ENSGAFG00000004903	lsm4	100	94.681	ENSPFOG00000000570	lsm4	100	94.681	Poecilia_formosa
ENSGAFG00000004903	lsm4	97	94.531	ENSPLAG00000016267	lsm4	100	96.503	Poecilia_latipinna
ENSGAFG00000004903	lsm4	97	95.312	ENSPMEG00000016378	lsm4	100	97.203	Poecilia_mexicana
ENSGAFG00000004903	lsm4	100	93.085	ENSPREG00000011290	lsm4	100	93.085	Poecilia_reticulata
ENSGAFG00000004903	lsm4	55	94.521	ENSPPYG00000009736	LSM4	79	83.065	Pongo_abelii
ENSGAFG00000004903	lsm4	55	93.151	ENSPCAG00000008513	LSM4	77	79.817	Procavia_capensis
ENSGAFG00000004903	lsm4	64	91.667	ENSPCOG00000019837	LSM4	79	82.258	Propithecus_coquereli
ENSGAFG00000004903	lsm4	55	94.521	ENSPVAG00000015383	LSM4	79	83.065	Pteropus_vampyrus
ENSGAFG00000004903	lsm4	97	89.313	ENSPNYG00000016794	lsm4	100	91.781	Pundamilia_nyererei
ENSGAFG00000004903	lsm4	92	87.705	ENSPNAG00000016598	lsm4	100	90.441	Pygocentrus_nattereri
ENSGAFG00000004903	lsm4	55	91.781	ENSRNOG00000019572	Lsm4	79	81.452	Rattus_norvegicus
ENSGAFG00000004903	lsm4	55	94.521	ENSRBIG00000024717	LSM4	98	79.200	Rhinopithecus_bieti
ENSGAFG00000004903	lsm4	55	94.521	ENSRROG00000045706	LSM4	98	79.200	Rhinopithecus_roxellana
ENSGAFG00000004903	lsm4	55	94.521	ENSSBOG00000022455	LSM4	77	80.909	Saimiri_boliviensis_boliviensis
ENSGAFG00000004903	lsm4	55	95.890	ENSSHAG00000011559	LSM4	99	85.000	Sarcophilus_harrisii
ENSGAFG00000004903	lsm4	97	86.822	ENSSFOG00015021067	lsm4	100	89.583	Scleropages_formosus
ENSGAFG00000004903	lsm4	97	72.593	ENSSMAG00000021020	lsm4	100	88.667	Scophthalmus_maximus
ENSGAFG00000004903	lsm4	97	76.974	ENSSDUG00000009588	lsm4	100	80.240	Seriola_dumerili
ENSGAFG00000004903	lsm4	97	76.471	ENSSLDG00000006827	lsm4	100	79.762	Seriola_lalandi_dorsalis
ENSGAFG00000004903	lsm4	55	95.890	ENSSPUG00000010166	LSM4	70	82.927	Sphenodon_punctatus
ENSGAFG00000004903	lsm4	97	85.294	ENSSPAG00000011615	lsm4	100	88.079	Stegastes_partitus
ENSGAFG00000004903	lsm4	55	94.521	ENSSSCG00000034314	LSM4	79	83.065	Sus_scrofa
ENSGAFG00000004903	lsm4	97	92.188	ENSTRUG00000021737	lsm4	100	94.406	Takifugu_rubripes
ENSGAFG00000004903	lsm4	97	86.822	ENSTNIG00000010191	lsm4	100	91.667	Tetraodon_nigroviridis
ENSGAFG00000004903	lsm4	55	94.521	ENSUAMG00000000665	LSM4	100	78.519	Ursus_americanus
ENSGAFG00000004903	lsm4	55	94.521	ENSUMAG00000009013	LSM4	79	83.065	Ursus_maritimus
ENSGAFG00000004903	lsm4	55	94.521	ENSVVUG00000008136	LSM4	56	82.927	Vulpes_vulpes
ENSGAFG00000004903	lsm4	63	93.976	ENSXETG00000024933	lsm4	99	86.331	Xenopus_tropicalis
ENSGAFG00000004903	lsm4	100	96.809	ENSXMAG00000026672	lsm4	100	96.809	Xiphophorus_maculatus