EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000005388 (Gene tree)
Gene ID: -
Gene Symbol: si:dkey-16l2.16
Alias: -
Full Name: si:dkey-16l2.16
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 9826 bases
Position: chrNHOQ01002523.1:1172959-1182784
Accession: ZDB-GENE-141219-36
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000007918	MMR_HSR1	PF01926.23	5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000008004	-	588	-	ENSGAFP00000007923	195 (aa)	-	-
ENSGAFT00000007999	-	2646	-	ENSGAFP00000007918	209 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000005388's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000005388's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000005388	si:dkey-16l2.16	79	44.048	ENSGAFG00000004604	RAB39B	79	44.048
ENSGAFG00000005388	si:dkey-16l2.16	80	38.150	ENSGAFG00000021688	-	83	38.150
ENSGAFG00000005388	si:dkey-16l2.16	98	40.385	ENSGAFG00000016549	rab11a	96	40.385
ENSGAFG00000005388	si:dkey-16l2.16	75	46.203	ENSGAFG00000021724	rab25b	76	46.203
ENSGAFG00000005388	si:dkey-16l2.16	80	44.643	ENSGAFG00000021725	rab11al	78	44.643
ENSGAFG00000005388	si:dkey-16l2.16	77	37.888	ENSGAFG00000001301	rab22a	83	37.888
ENSGAFG00000005388	si:dkey-16l2.16	81	36.571	ENSGAFG00000004099	rab9b	78	36.571
ENSGAFG00000005388	si:dkey-16l2.16	69	44.371	ENSGAFG00000015249	-	63	44.371
ENSGAFG00000005388	si:dkey-16l2.16	74	33.117	ENSGAFG00000007684	rab23	78	33.750
ENSGAFG00000005388	si:dkey-16l2.16	77	41.212	ENSGAFG00000017270	rab6ba	79	41.212
ENSGAFG00000005388	si:dkey-16l2.16	82	44.633	ENSGAFG00000002790	rab18a	86	44.633
ENSGAFG00000005388	si:dkey-16l2.16	87	47.253	ENSGAFG00000014787	-	91	47.253
ENSGAFG00000005388	si:dkey-16l2.16	83	43.103	ENSGAFG00000011713	rab25a	86	56.338
ENSGAFG00000005388	si:dkey-16l2.16	96	35.323	ENSGAFG00000000884	rab5c	89	36.816
ENSGAFG00000005388	si:dkey-16l2.16	75	64.557	ENSGAFG00000015702	zgc:171927	63	64.557
ENSGAFG00000005388	si:dkey-16l2.16	82	44.767	ENSGAFG00000017305	RAB15	87	49.231
ENSGAFG00000005388	si:dkey-16l2.16	75	46.012	ENSGAFG00000015490	rab33a	59	46.012
ENSGAFG00000005388	si:dkey-16l2.16	76	43.396	ENSGAFG00000011619	rab5aa	74	43.396
ENSGAFG00000005388	si:dkey-16l2.16	78	41.212	ENSGAFG00000014730	-	82	41.212
ENSGAFG00000005388	si:dkey-16l2.16	55	30.172	ENSGAFG00000008601	arl3l2	52	30.172
ENSGAFG00000005388	si:dkey-16l2.16	84	30.726	ENSGAFG00000010126	rasd4	86	30.726
ENSGAFG00000005388	si:dkey-16l2.16	56	31.250	ENSGAFG00000006962	arfrp1	61	31.250
ENSGAFG00000005388	si:dkey-16l2.16	85	44.944	ENSGAFG00000020309	rab30	94	44.944
ENSGAFG00000005388	si:dkey-16l2.16	78	35.542	ENSGAFG00000021814	hrasb	87	35.542
ENSGAFG00000005388	si:dkey-16l2.16	98	36.190	ENSGAFG00000006846	rab2a	99	36.190
ENSGAFG00000005388	si:dkey-16l2.16	77	40.854	ENSGAFG00000006356	rab6a	79	40.854
ENSGAFG00000005388	si:dkey-16l2.16	79	44.643	ENSGAFG00000006932	-	79	44.643
ENSGAFG00000005388	si:dkey-16l2.16	83	32.402	ENSGAFG00000021738	rhebl1	93	32.402
ENSGAFG00000005388	si:dkey-16l2.16	96	34.300	ENSGAFG00000018916	-	86	34.300
ENSGAFG00000005388	si:dkey-16l2.16	82	40.000	ENSGAFG00000005477	rab4a	79	40.698
ENSGAFG00000005388	si:dkey-16l2.16	81	45.349	ENSGAFG00000002141	rab42a	79	45.349
ENSGAFG00000005388	si:dkey-16l2.16	77	34.568	ENSGAFG00000021765	kras	94	32.584
ENSGAFG00000005388	si:dkey-16l2.16	77	61.212	ENSGAFG00000019305	rab1ba	81	61.212
ENSGAFG00000005388	si:dkey-16l2.16	90	38.624	ENSGAFG00000019872	rab41	86	38.624
ENSGAFG00000005388	si:dkey-16l2.16	55	31.034	ENSGAFG00000005872	arl3	62	31.034
ENSGAFG00000005388	si:dkey-16l2.16	80	38.150	ENSGAFG00000020476	RAB7A	83	38.150
ENSGAFG00000005388	si:dkey-16l2.16	84	58.919	ENSGAFG00000000918	-	90	58.919
ENSGAFG00000005388	si:dkey-16l2.16	76	39.264	ENSGAFG00000015135	rab36	63	39.264
ENSGAFG00000005388	si:dkey-16l2.16	78	35.503	ENSGAFG00000020906	rheb	89	35.503
ENSGAFG00000005388	si:dkey-16l2.16	97	31.579	ENSGAFG00000000629	RAB29	99	31.579
ENSGAFG00000005388	si:dkey-16l2.16	96	35.407	ENSGAFG00000000591	rab9a	90	35.407
ENSGAFG00000005388	si:dkey-16l2.16	98	39.234	ENSGAFG00000005679	rab11ba	96	39.234
ENSGAFG00000005388	si:dkey-16l2.16	56	30.328	ENSGAFG00000018151	-	62	30.328
ENSGAFG00000005388	si:dkey-16l2.16	79	30.939	ENSGAFG00000007473	rasl11a	69	30.939
ENSGAFG00000005388	si:dkey-16l2.16	80	42.442	ENSGAFG00000008183	si:dkey-34d22.5	77	42.442
ENSGAFG00000005388	si:dkey-16l2.16	76	40.881	ENSGAFG00000003642	-	89	36.318
ENSGAFG00000005388	si:dkey-16l2.16	84	48.588	ENSGAFG00000002756	rab15	83	48.588
ENSGAFG00000005388	si:dkey-16l2.16	95	35.096	ENSGAFG00000012579	rab34a	77	35.096
ENSGAFG00000005388	si:dkey-16l2.16	95	30.198	ENSGAFG00000010541	rras	95	30.198
ENSGAFG00000005388	si:dkey-16l2.16	73	34.868	ENSGAFG00000005188	rabl2	67	34.868
ENSGAFG00000005388	si:dkey-16l2.16	98	39.234	ENSGAFG00000007102	rab11bb	96	39.234
ENSGAFG00000005388	si:dkey-16l2.16	76	45.122	ENSGAFG00000021202	zgc:101559	70	45.122
ENSGAFG00000005388	si:dkey-16l2.16	76	64.417	ENSGAFG00000001289	rab1ab	79	64.417
ENSGAFG00000005388	si:dkey-16l2.16	74	44.379	ENSGAFG00000019659	rab33ba	70	44.379
ENSGAFG00000005388	si:dkey-16l2.16	78	47.561	ENSGAFG00000008560	rab18b	80	47.561
ENSGAFG00000005388	si:dkey-16l2.16	79	35.882	ENSGAFG00000020102	si:dkey-13a21.4	83	35.882
ENSGAFG00000005388	si:dkey-16l2.16	77	41.818	ENSGAFG00000010916	rab6bb	79	41.818
ENSGAFG00000005388	si:dkey-16l2.16	72	30.061	ENSGAFG00000006973	arl1	90	30.061

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000005388	si:dkey-16l2.16	100	86.124	ENSAPOG00000008263	si:dkey-16l2.16	100	86.124	Acanthochromis_polyacanthus
ENSGAFG00000005388	si:dkey-16l2.16	100	87.560	ENSAOCG00000016825	si:dkey-16l2.16	100	87.560	Amphiprion_ocellaris
ENSGAFG00000005388	si:dkey-16l2.16	100	87.560	ENSAPEG00000006500	si:dkey-16l2.16	100	87.560	Amphiprion_percula
ENSGAFG00000005388	si:dkey-16l2.16	100	88.038	ENSATEG00000019238	si:dkey-16l2.16	100	88.038	Anabas_testudineus
ENSGAFG00000005388	si:dkey-16l2.16	100	88.038	ENSACLG00000018721	si:dkey-16l2.16	100	88.038	Astatotilapia_calliptera
ENSGAFG00000005388	si:dkey-16l2.16	100	87.081	ENSAMXG00000038243	si:dkey-16l2.16	94	96.610	Astyanax_mexicanus
ENSGAFG00000005388	si:dkey-16l2.16	56	96.610	ENSCSEG00000009988	si:dkey-16l2.16	90	96.610	Cynoglossus_semilaevis
ENSGAFG00000005388	si:dkey-16l2.16	100	91.388	ENSCVAG00000003537	si:dkey-16l2.16	100	91.388	Cyprinodon_variegatus
ENSGAFG00000005388	si:dkey-16l2.16	100	85.646	ENSDARG00000037967	si:dkey-16l2.16	99	94.915	Danio_rerio
ENSGAFG00000005388	si:dkey-16l2.16	99	81.250	ENSELUG00000023247	si:dkey-16l2.16	99	81.250	Esox_lucius
ENSGAFG00000005388	si:dkey-16l2.16	58	94.215	ENSFHEG00000000767	si:dkey-16l2.16	78	94.215	Fundulus_heteroclitus
ENSGAFG00000005388	si:dkey-16l2.16	77	83.230	ENSGMOG00000015174	si:dkey-16l2.16	98	83.230	Gadus_morhua
ENSGAFG00000005388	si:dkey-16l2.16	100	86.124	ENSGACG00000014915	si:dkey-16l2.16	98	86.124	Gasterosteus_aculeatus
ENSGAFG00000005388	si:dkey-16l2.16	100	88.517	ENSHBUG00000019261	si:dkey-16l2.16	100	88.517	Haplochromis_burtoni
ENSGAFG00000005388	si:dkey-16l2.16	100	87.081	ENSHCOG00000006538	si:dkey-16l2.16	100	87.081	Hippocampus_comes
ENSGAFG00000005388	si:dkey-16l2.16	100	86.603	ENSKMAG00000003494	si:dkey-16l2.16	100	86.603	Kryptolebias_marmoratus
ENSGAFG00000005388	si:dkey-16l2.16	100	88.038	ENSLBEG00000007681	si:dkey-16l2.16	100	88.038	Labrus_bergylta
ENSGAFG00000005388	si:dkey-16l2.16	100	88.517	ENSMAMG00000019230	si:dkey-16l2.16	100	88.517	Mastacembelus_armatus
ENSGAFG00000005388	si:dkey-16l2.16	100	88.038	ENSMZEG00005002081	si:dkey-16l2.16	100	88.038	Maylandia_zebra
ENSGAFG00000005388	si:dkey-16l2.16	99	87.379	ENSMMOG00000020140	si:dkey-16l2.16	97	87.379	Mola_mola
ENSGAFG00000005388	si:dkey-16l2.16	100	87.560	ENSMALG00000014727	si:dkey-16l2.16	99	87.560	Monopterus_albus
ENSGAFG00000005388	si:dkey-16l2.16	100	88.038	ENSNBRG00000008930	si:dkey-16l2.16	100	88.038	Neolamprologus_brichardi
ENSGAFG00000005388	si:dkey-16l2.16	100	88.038	ENSONIG00000009443	si:dkey-16l2.16	100	88.038	Oreochromis_niloticus
ENSGAFG00000005388	si:dkey-16l2.16	100	84.211	ENSORLG00000001098	si:dkey-16l2.16	99	84.211	Oryzias_latipes
ENSGAFG00000005388	si:dkey-16l2.16	100	84.211	ENSORLG00020000867	si:dkey-16l2.16	99	84.211	Oryzias_latipes_hni
ENSGAFG00000005388	si:dkey-16l2.16	100	84.689	ENSOMEG00000015474	si:dkey-16l2.16	100	85.646	Oryzias_melastigma
ENSGAFG00000005388	si:dkey-16l2.16	100	75.598	ENSPKIG00000018888	si:dkey-16l2.16	100	75.598	Paramormyrops_kingsleyae
ENSGAFG00000005388	si:dkey-16l2.16	100	85.646	ENSPKIG00000005686	-	100	85.646	Paramormyrops_kingsleyae
ENSGAFG00000005388	si:dkey-16l2.16	100	87.081	ENSPMGG00000000751	si:dkey-16l2.16	100	87.081	Periophthalmus_magnuspinnatus
ENSGAFG00000005388	si:dkey-16l2.16	100	99.043	ENSPFOG00000004746	si:dkey-16l2.16	100	99.043	Poecilia_formosa
ENSGAFG00000005388	si:dkey-16l2.16	100	99.522	ENSPLAG00000021043	si:dkey-16l2.16	100	99.522	Poecilia_latipinna
ENSGAFG00000005388	si:dkey-16l2.16	100	99.043	ENSPMEG00000007165	si:dkey-16l2.16	100	99.043	Poecilia_mexicana
ENSGAFG00000005388	si:dkey-16l2.16	100	99.043	ENSPREG00000005323	si:dkey-16l2.16	100	99.043	Poecilia_reticulata
ENSGAFG00000005388	si:dkey-16l2.16	100	88.517	ENSPNYG00000009490	si:dkey-16l2.16	100	88.517	Pundamilia_nyererei
ENSGAFG00000005388	si:dkey-16l2.16	100	87.081	ENSPNAG00000018986	si:dkey-16l2.16	100	87.081	Pygocentrus_nattereri
ENSGAFG00000005388	si:dkey-16l2.16	99	76.923	ENSSFOG00015006414	-	99	76.923	Scleropages_formosus
ENSGAFG00000005388	si:dkey-16l2.16	100	85.646	ENSSFOG00015021448	-	100	85.646	Scleropages_formosus
ENSGAFG00000005388	si:dkey-16l2.16	100	84.211	ENSSMAG00000011769	si:dkey-16l2.16	94	84.211	Scophthalmus_maximus
ENSGAFG00000005388	si:dkey-16l2.16	100	90.431	ENSSDUG00000005719	si:dkey-16l2.16	100	90.431	Seriola_dumerili
ENSGAFG00000005388	si:dkey-16l2.16	100	90.431	ENSSLDG00000003631	si:dkey-16l2.16	100	90.431	Seriola_lalandi_dorsalis
ENSGAFG00000005388	si:dkey-16l2.16	100	88.517	ENSSPAG00000006302	si:dkey-16l2.16	100	88.517	Stegastes_partitus
ENSGAFG00000005388	si:dkey-16l2.16	100	88.038	ENSTRUG00000025076	si:dkey-16l2.16	94	96.639	Takifugu_rubripes
ENSGAFG00000005388	si:dkey-16l2.16	100	88.995	ENSTNIG00000011300	si:dkey-16l2.16	100	88.995	Tetraodon_nigroviridis
ENSGAFG00000005388	si:dkey-16l2.16	100	99.522	ENSXMAG00000021767	si:dkey-16l2.16	100	99.522	Xiphophorus_maculatus