EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000005389 (Gene tree)
Gene ID: -
Gene Symbol: polr2a
Alias: im:7136071
Full Name: polymerase (RNA) II (DNA directed) polypeptide A
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 15633 bases
Position: chrNHOQ01000739.1:3345880-3361512
Accession: ZDB-GENE-041008-78
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000008007	RNA_pol_Rpb1_5	PF04998.17	2.3e-101	1	1
ENSGAFP00000007989	RNA_pol_Rpb1_5	PF04998.17	2.4e-101	1	1
ENSGAFP00000008007	RNA_pol_Rpb1_R	PF05001.13	1.6e-11	1	15
ENSGAFP00000008007	RNA_pol_Rpb1_R	PF05001.13	1.6e-11	2	15
ENSGAFP00000008007	RNA_pol_Rpb1_R	PF05001.13	1.6e-11	3	15
ENSGAFP00000008007	RNA_pol_Rpb1_R	PF05001.13	1.6e-11	4	15
ENSGAFP00000008007	RNA_pol_Rpb1_R	PF05001.13	1.6e-11	5	15
ENSGAFP00000008007	RNA_pol_Rpb1_R	PF05001.13	1.6e-11	6	15
ENSGAFP00000008007	RNA_pol_Rpb1_R	PF05001.13	1.6e-11	7	15
ENSGAFP00000008007	RNA_pol_Rpb1_R	PF05001.13	1.6e-11	8	15
ENSGAFP00000008007	RNA_pol_Rpb1_R	PF05001.13	1.6e-11	9	15
ENSGAFP00000008007	RNA_pol_Rpb1_R	PF05001.13	1.6e-11	10	15
ENSGAFP00000008007	RNA_pol_Rpb1_R	PF05001.13	1.6e-11	11	15
ENSGAFP00000008007	RNA_pol_Rpb1_R	PF05001.13	1.6e-11	12	15
ENSGAFP00000008007	RNA_pol_Rpb1_R	PF05001.13	1.6e-11	13	15
ENSGAFP00000008007	RNA_pol_Rpb1_R	PF05001.13	1.6e-11	14	15
ENSGAFP00000008007	RNA_pol_Rpb1_R	PF05001.13	1.6e-11	15	15
ENSGAFP00000007989	RNA_pol_Rpb1_R	PF05001.13	1.4e-06	1	15
ENSGAFP00000007989	RNA_pol_Rpb1_R	PF05001.13	1.4e-06	2	15
ENSGAFP00000007989	RNA_pol_Rpb1_R	PF05001.13	1.4e-06	3	15
ENSGAFP00000007989	RNA_pol_Rpb1_R	PF05001.13	1.4e-06	4	15
ENSGAFP00000007989	RNA_pol_Rpb1_R	PF05001.13	1.4e-06	5	15
ENSGAFP00000007989	RNA_pol_Rpb1_R	PF05001.13	1.4e-06	6	15
ENSGAFP00000007989	RNA_pol_Rpb1_R	PF05001.13	1.4e-06	7	15
ENSGAFP00000007989	RNA_pol_Rpb1_R	PF05001.13	1.4e-06	8	15
ENSGAFP00000007989	RNA_pol_Rpb1_R	PF05001.13	1.4e-06	9	15
ENSGAFP00000007989	RNA_pol_Rpb1_R	PF05001.13	1.4e-06	10	15
ENSGAFP00000007989	RNA_pol_Rpb1_R	PF05001.13	1.4e-06	11	15
ENSGAFP00000007989	RNA_pol_Rpb1_R	PF05001.13	1.4e-06	12	15
ENSGAFP00000007989	RNA_pol_Rpb1_R	PF05001.13	1.4e-06	13	15
ENSGAFP00000007989	RNA_pol_Rpb1_R	PF05001.13	1.4e-06	14	15
ENSGAFP00000007989	RNA_pol_Rpb1_R	PF05001.13	1.4e-06	15	15
ENSGAFP00000008007	RNA_pol_Rpb1_4	PF05000.17	1.1e-37	1	1
ENSGAFP00000007989	RNA_pol_Rpb1_4	PF05000.17	1.1e-37	1	1
ENSGAFP00000008007	RNA_pol_Rpb1_2	PF00623.20	8.1e-75	1	1
ENSGAFP00000007989	RNA_pol_Rpb1_2	PF00623.20	8.4e-75	1	1
ENSGAFP00000008007	RNA_pol_Rpb1_3	PF04983.18	2.3e-50	1	1
ENSGAFP00000007989	RNA_pol_Rpb1_3	PF04983.18	2.4e-50	1	1
ENSGAFP00000008007	RNA_pol_Rpb1_1	PF04997.12	5.8e-109	1	1
ENSGAFP00000007989	RNA_pol_Rpb1_1	PF04997.12	6.1e-109	1	1
ENSGAFP00000008007	RNA_pol_Rpb1_7	PF04990.12	5.5e-55	1	1
ENSGAFP00000007989	RNA_pol_Rpb1_7	PF04990.12	5.6e-55	1	1
ENSGAFP00000008007	RNA_pol_Rpb1_6	PF04992.14	2.3e-67	1	1
ENSGAFP00000007989	RNA_pol_Rpb1_6	PF04992.14	2.4e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000008088	-	5319	-	ENSGAFP00000008007	1772 (aa)	-	-
ENSGAFT00000008070	-	8952	-	ENSGAFP00000007989	1810 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000005389's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000005389's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000005389	polr2a	73	37.270	ENSGAFG00000005112	polr3a	91	37.270

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000005389	polr2a	99	93.896	ENSAPOG00000006552	polr2a	91	93.469	Acanthochromis_polyacanthus
ENSGAFG00000005389	polr2a	99	92.069	ENSAMEG00000016265	-	97	94.366	Ailuropoda_melanoleuca
ENSGAFG00000005389	polr2a	100	93.382	ENSACIG00000015982	polr2a	99	100.000	Amphilophus_citrinellus
ENSGAFG00000005389	polr2a	99	93.951	ENSAOCG00000004255	polr2a	100	95.968	Amphiprion_ocellaris
ENSGAFG00000005389	polr2a	100	93.951	ENSAPEG00000012623	polr2a	99	100.000	Amphiprion_percula
ENSGAFG00000005389	polr2a	100	95.037	ENSATEG00000019644	polr2a	99	100.000	Anabas_testudineus
ENSGAFG00000005389	polr2a	99	92.484	ENSACAG00000014561	POLR2A	99	94.366	Anolis_carolinensis
ENSGAFG00000005389	polr2a	99	92.427	ENSANAG00000020093	-	100	94.366	Aotus_nancymaae
ENSGAFG00000005389	polr2a	100	94.851	ENSACLG00000006735	polr2a	99	100.000	Astatotilapia_calliptera
ENSGAFG00000005389	polr2a	100	94.417	ENSAMXG00000020046	polr2a	99	100.000	Astyanax_mexicanus
ENSGAFG00000005389	polr2a	99	92.427	ENSBTAG00000046765	POLR2A	99	92.958	Bos_taurus
ENSGAFG00000005389	polr2a	99	70.264	WBGene00000123	ama-1	99	78.947	Caenorhabditis_elegans
ENSGAFG00000005389	polr2a	99	94.538	ENSCAFG00000016532	POLR2A	99	94.544	Canis_familiaris
ENSGAFG00000005389	polr2a	99	91.501	ENSCAFG00020007929	-	100	94.366	Canis_lupus_dingo
ENSGAFG00000005389	polr2a	99	92.427	ENSCHIG00000027173	-	99	92.958	Capra_hircus
ENSGAFG00000005389	polr2a	99	93.928	ENSTSYG00000012803	-	100	94.366	Carlito_syrichta
ENSGAFG00000005389	polr2a	98	92.177	ENSCAPG00000001882	-	100	94.366	Cavia_aperea
ENSGAFG00000005389	polr2a	99	92.141	ENSCPOG00000014812	-	100	94.366	Cavia_porcellus
ENSGAFG00000005389	polr2a	99	92.427	ENSCCAG00000020938	-	100	94.366	Cebus_capucinus
ENSGAFG00000005389	polr2a	99	92.427	ENSCATG00000013680	-	100	94.366	Cercocebus_atys
ENSGAFG00000005389	polr2a	99	92.303	ENSCLAG00000012196	-	100	94.366	Chinchilla_lanigera
ENSGAFG00000005389	polr2a	99	83.652	ENSCSAG00000011644	-	98	94.366	Chlorocebus_sabaeus
ENSGAFG00000005389	polr2a	99	90.932	ENSCPBG00000012697	POLR2A	99	85.788	Chrysemys_picta_bellii
ENSGAFG00000005389	polr2a	99	71.499	ENSCING00000007884	-	99	75.791	Ciona_intestinalis
ENSGAFG00000005389	polr2a	99	75.015	ENSCSAVG00000008334	-	99	80.702	Ciona_savignyi
ENSGAFG00000005389	polr2a	99	91.744	ENSCANG00000010622	-	100	94.366	Colobus_angolensis_palliatus
ENSGAFG00000005389	polr2a	99	88.958	ENSCGRG00001003538	Polr2a	100	94.366	Cricetulus_griseus_chok1gshd
ENSGAFG00000005389	polr2a	97	85.174	ENSCGRG00000012105	Polr2a	99	89.313	Cricetulus_griseus_crigri
ENSGAFG00000005389	polr2a	99	93.983	ENSCSEG00000002635	polr2a	99	100.000	Cynoglossus_semilaevis
ENSGAFG00000005389	polr2a	100	95.774	ENSCVAG00000005156	polr2a	99	100.000	Cyprinodon_variegatus
ENSGAFG00000005389	polr2a	100	92.457	ENSDARG00000099966	polr2a	99	100.000	Danio_rerio
ENSGAFG00000005389	polr2a	99	91.682	ENSDNOG00000016482	-	98	94.366	Dasypus_novemcinctus
ENSGAFG00000005389	polr2a	99	92.427	ENSDORG00000008667	Polr2a	100	94.366	Dipodomys_ordii
ENSGAFG00000005389	polr2a	99	68.418	FBgn0003277	RpII215	96	75.676	Drosophila_melanogaster
ENSGAFG00000005389	polr2a	93	89.391	ENSETEG00000002540	-	90	91.524	Echinops_telfairi
ENSGAFG00000005389	polr2a	99	85.340	ENSEBUG00000013967	polr2a	98	83.945	Eptatretus_burgeri
ENSGAFG00000005389	polr2a	99	92.626	ENSEASG00005019114	-	92	92.635	Equus_asinus_asinus
ENSGAFG00000005389	polr2a	99	92.427	ENSECAG00000018485	POLR2A	99	94.366	Equus_caballus
ENSGAFG00000005389	polr2a	90	94.459	ENSEEUG00000001154	-	95	94.459	Erinaceus_europaeus
ENSGAFG00000005389	polr2a	100	92.540	ENSELUG00000014284	polr2a	100	93.218	Esox_lucius
ENSGAFG00000005389	polr2a	99	92.365	ENSFDAG00000008287	-	100	94.366	Fukomys_damarensis
ENSGAFG00000005389	polr2a	99	94.772	ENSFHEG00000001768	polr2a	100	94.216	Fundulus_heteroclitus
ENSGAFG00000005389	polr2a	99	100.000	ENSGMOG00000007725	polr2a	100	100.000	Gadus_morhua
ENSGAFG00000005389	polr2a	99	94.075	ENSGACG00000019366	polr2a	100	93.853	Gasterosteus_aculeatus
ENSGAFG00000005389	polr2a	99	84.602	ENSGGOG00000014800	-	100	94.366	Gorilla_gorilla
ENSGAFG00000005389	polr2a	99	94.851	ENSHBUG00000018937	polr2a	99	92.770	Haplochromis_burtoni
ENSGAFG00000005389	polr2a	99	92.365	ENSHGLG00000012381	POLR2A	100	94.366	Heterocephalus_glaber_female
ENSGAFG00000005389	polr2a	99	92.365	ENSHGLG00100014843	POLR2A	100	94.366	Heterocephalus_glaber_male
ENSGAFG00000005389	polr2a	100	93.119	ENSHCOG00000011874	polr2a	99	98.551	Hippocampus_comes
ENSGAFG00000005389	polr2a	100	93.859	ENSIPUG00000002613	Polr2a	99	100.000	Ictalurus_punctatus
ENSGAFG00000005389	polr2a	99	92.427	ENSSTOG00000001304	-	100	94.366	Ictidomys_tridecemlineatus
ENSGAFG00000005389	polr2a	99	92.427	ENSJJAG00000013049	Polr2a	100	94.366	Jaculus_jaculus
ENSGAFG00000005389	polr2a	89	100.000	ENSKMAG00000016343	polr2a	86	100.000	Kryptolebias_marmoratus
ENSGAFG00000005389	polr2a	99	95.099	ENSLBEG00000027652	polr2a	99	100.000	Labrus_bergylta
ENSGAFG00000005389	polr2a	98	83.302	ENSLACG00000012071	POLR2A	99	94.366	Latimeria_chalumnae
ENSGAFG00000005389	polr2a	99	91.241	ENSLOCG00000013863	polr2a	100	94.160	Lepisosteus_oculatus
ENSGAFG00000005389	polr2a	99	92.427	ENSLAFG00000008626	-	99	94.606	Loxodonta_africana
ENSGAFG00000005389	polr2a	55	93.361	ENSMFAG00000007042	-	99	93.361	Macaca_fascicularis
ENSGAFG00000005389	polr2a	99	92.427	ENSMMUG00000023620	-	100	94.366	Macaca_mulatta
ENSGAFG00000005389	polr2a	99	91.993	ENSMNEG00000040407	-	99	94.366	Macaca_nemestrina
ENSGAFG00000005389	polr2a	98	87.911	ENSMLEG00000030263	-	99	94.366	Mandrillus_leucophaeus
ENSGAFG00000005389	polr2a	100	93.618	ENSMAMG00000003351	polr2a	99	100.000	Mastacembelus_armatus
ENSGAFG00000005389	polr2a	100	93.797	ENSMZEG00005021429	polr2a	99	100.000	Maylandia_zebra
ENSGAFG00000005389	polr2a	55	94.190	ENSMAUG00000021055	-	99	94.190	Mesocricetus_auratus
ENSGAFG00000005389	polr2a	99	92.365	ENSMICG00000013372	-	100	94.366	Microcebus_murinus
ENSGAFG00000005389	polr2a	99	92.259	ENSMOCG00000018279	Polr2a	100	94.366	Microtus_ochrogaster
ENSGAFG00000005389	polr2a	99	93.048	ENSMMOG00000012515	polr2a	95	94.479	Mola_mola
ENSGAFG00000005389	polr2a	99	92.117	ENSMODG00000007009	-	98	94.366	Monodelphis_domestica
ENSGAFG00000005389	polr2a	100	93.235	ENSMALG00000008716	polr2a	97	98.333	Monopterus_albus
ENSGAFG00000005389	polr2a	99	92.427	MGP_CAROLIEiJ_G0016587	Polr2a	100	94.366	Mus_caroli
ENSGAFG00000005389	polr2a	99	92.427	ENSMUSG00000005198	Polr2a	100	94.366	Mus_musculus
ENSGAFG00000005389	polr2a	99	90.297	MGP_PahariEiJ_G0017718	Polr2a	98	94.366	Mus_pahari
ENSGAFG00000005389	polr2a	99	92.427	MGP_SPRETEiJ_G0017423	Polr2a	100	94.366	Mus_spretus
ENSGAFG00000005389	polr2a	99	92.303	ENSMPUG00000009648	-	99	94.366	Mustela_putorius_furo
ENSGAFG00000005389	polr2a	99	91.816	ENSMLUG00000009088	-	98	94.366	Myotis_lucifugus
ENSGAFG00000005389	polr2a	99	92.427	ENSNGAG00000002543	Polr2a	100	94.366	Nannospalax_galili
ENSGAFG00000005389	polr2a	100	95.037	ENSNBRG00000002005	polr2a	99	100.000	Neolamprologus_brichardi
ENSGAFG00000005389	polr2a	99	92.055	ENSNLEG00000009460	-	100	94.366	Nomascus_leucogenys
ENSGAFG00000005389	polr2a	94	95.316	ENSMEUG00000008611	-	95	86.775	Notamacropus_eugenii
ENSGAFG00000005389	polr2a	87	94.315	ENSOPRG00000015116	-	99	94.315	Ochotona_princeps
ENSGAFG00000005389	polr2a	99	94.456	ENSODEG00000017674	-	100	94.366	Octodon_degus
ENSGAFG00000005389	polr2a	100	93.452	ENSONIG00000009231	polr2a	99	100.000	Oreochromis_niloticus
ENSGAFG00000005389	polr2a	53	93.991	ENSOANG00000003303	-	98	93.991	Ornithorhynchus_anatinus
ENSGAFG00000005389	polr2a	99	93.378	ENSOCUG00000017929	-	96	94.482	Oryctolagus_cuniculus
ENSGAFG00000005389	polr2a	100	93.785	ENSORLG00000006431	polr2a	99	100.000	Oryzias_latipes
ENSGAFG00000005389	polr2a	100	93.785	ENSORLG00020010235	polr2a	99	100.000	Oryzias_latipes_hni
ENSGAFG00000005389	polr2a	100	95.347	ENSORLG00015007075	polr2a	99	100.000	Oryzias_latipes_hsok
ENSGAFG00000005389	polr2a	93	98.444	ENSOMEG00000010713	polr2a	100	98.444	Oryzias_melastigma
ENSGAFG00000005389	polr2a	99	92.427	ENSOGAG00000033608	-	99	94.366	Otolemur_garnettii
ENSGAFG00000005389	polr2a	99	92.427	ENSOARG00000013874	-	100	89.934	Ovis_aries
ENSGAFG00000005389	polr2a	99	91.943	ENSPPAG00000043734	-	100	94.366	Pan_paniscus
ENSGAFG00000005389	polr2a	99	92.055	ENSPTRG00000008691	POLR2A	100	94.366	Pan_troglodytes
ENSGAFG00000005389	polr2a	99	91.744	ENSPANG00000024099	-	100	94.366	Papio_anubis
ENSGAFG00000005389	polr2a	96	95.749	ENSPKIG00000005727	polr2a	85	95.749	Paramormyrops_kingsleyae
ENSGAFG00000005389	polr2a	94	92.770	ENSPSIG00000014006	POLR2A	100	92.689	Pelodiscus_sinensis
ENSGAFG00000005389	polr2a	100	97.567	ENSPMGG00000019734	polr2a	100	97.567	Periophthalmus_magnuspinnatus
ENSGAFG00000005389	polr2a	99	92.427	ENSPEMG00000012521	Polr2a	100	94.366	Peromyscus_maniculatus_bairdii
ENSGAFG00000005389	polr2a	93	94.355	ENSPCIG00000028851	-	82	94.355	Phascolarctos_cinereus
ENSGAFG00000005389	polr2a	100	95.217	ENSPFOG00000007890	polr2a	100	94.661	Poecilia_formosa
ENSGAFG00000005389	polr2a	100	95.217	ENSPLAG00000007399	polr2a	100	94.661	Poecilia_latipinna
ENSGAFG00000005389	polr2a	100	95.217	ENSPMEG00000002071	polr2a	100	94.661	Poecilia_mexicana
ENSGAFG00000005389	polr2a	100	95.884	ENSPREG00000013122	polr2a	99	100.000	Poecilia_reticulata
ENSGAFG00000005389	polr2a	99	92.427	ENSPPYG00000007924	-	98	94.366	Pongo_abelii
ENSGAFG00000005389	polr2a	91	94.868	ENSPCAG00000006951	-	90	94.868	Procavia_capensis
ENSGAFG00000005389	polr2a	99	92.055	ENSPCOG00000025260	-	100	94.366	Propithecus_coquereli
ENSGAFG00000005389	polr2a	99	92.117	ENSPVAG00000005069	-	98	94.366	Pteropus_vampyrus
ENSGAFG00000005389	polr2a	100	93.230	ENSPNYG00000022340	polr2a	99	100.000	Pundamilia_nyererei
ENSGAFG00000005389	polr2a	100	93.119	ENSPNAG00000011237	polr2a	99	100.000	Pygocentrus_nattereri
ENSGAFG00000005389	polr2a	99	92.365	ENSRNOG00000028834	Polr2a	99	92.958	Rattus_norvegicus
ENSGAFG00000005389	polr2a	99	92.055	ENSRBIG00000002471	-	99	94.366	Rhinopithecus_bieti
ENSGAFG00000005389	polr2a	99	92.427	ENSRROG00000029583	-	99	94.366	Rhinopithecus_roxellana
ENSGAFG00000005389	polr2a	89	50.784	YDL140C	RPO21	99	80.702	Saccharomyces_cerevisiae
ENSGAFG00000005389	polr2a	99	92.427	ENSSBOG00000000808	-	100	94.366	Saimiri_boliviensis_boliviensis
ENSGAFG00000005389	polr2a	99	94.351	ENSSHAG00000002858	-	98	94.366	Sarcophilus_harrisii
ENSGAFG00000005389	polr2a	99	94.665	ENSSFOG00015023275	polr2a	99	94.393	Scleropages_formosus
ENSGAFG00000005389	polr2a	100	93.282	ENSSMAG00000009137	polr2a	99	100.000	Scophthalmus_maximus
ENSGAFG00000005389	polr2a	100	93.729	ENSSDUG00000020466	polr2a	99	100.000	Seriola_dumerili
ENSGAFG00000005389	polr2a	100	93.674	ENSSLDG00000020613	polr2a	99	100.000	Seriola_lalandi_dorsalis
ENSGAFG00000005389	polr2a	94	90.191	ENSSARG00000005875	-	99	91.016	Sorex_araneus
ENSGAFG00000005389	polr2a	100	98.570	ENSSPAG00000016741	polr2a	95	98.570	Stegastes_partitus
ENSGAFG00000005389	polr2a	99	91.496	ENSSSCG00000028278	-	99	94.366	Sus_scrofa
ENSGAFG00000005389	polr2a	97	92.312	ENSTRUG00000012320	polr2a	81	92.312	Takifugu_rubripes
ENSGAFG00000005389	polr2a	95	96.650	ENSTNIG00000010136	polr2a	100	96.650	Tetraodon_nigroviridis
ENSGAFG00000005389	polr2a	74	94.481	ENSTBEG00000013294	-	57	94.481	Tupaia_belangeri
ENSGAFG00000005389	polr2a	99	90.751	ENSTTRG00000014273	-	98	94.366	Tursiops_truncatus
ENSGAFG00000005389	polr2a	97	94.293	ENSUAMG00000014866	-	96	94.300	Ursus_americanus
ENSGAFG00000005389	polr2a	92	89.944	ENSUMAG00000015732	-	99	94.366	Ursus_maritimus
ENSGAFG00000005389	polr2a	62	98.370	ENSVPAG00000008842	-	77	98.370	Vicugna_pacos
ENSGAFG00000005389	polr2a	99	92.365	ENSVVUG00000027878	-	99	94.366	Vulpes_vulpes
ENSGAFG00000005389	polr2a	99	92.008	ENSXETG00000012465	polr2a	98	92.958	Xenopus_tropicalis
ENSGAFG00000005389	polr2a	100	96.980	ENSXCOG00000001804	polr2a	100	94.821	Xiphophorus_couchianus
ENSGAFG00000005389	polr2a	100	95.829	ENSXMAG00000015687	polr2a	99	100.000	Xiphophorus_maculatus