EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000005462 (Gene tree)
Gene ID: -
Gene Symbol: zc3h13
Alias: zgc:66359
Full Name: zinc finger CCCH-type containing 13
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 14199 bases
Position: chrNHOQ01000199.1:1542732-1556930
Accession: ZDB-GENE-040426-1619
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000008104	zf-CCCH	PF00642.24	3.2e-06	1	1
ENSGAFP00000008054	zf-CCCH	PF00642.24	3.2e-06	1	1
ENSGAFP00000008042	zf-CCCH	PF00642.24	3.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000008185	-	5169	-	ENSGAFP00000008104	1722 (aa)	-	-
ENSGAFT00000008123	-	7431	-	ENSGAFP00000008042	1732 (aa)	-	-
ENSGAFT00000008135	-	6521	-	ENSGAFP00000008054	1806 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000005462's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000005462's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000005462	zc3h13	87	73.747	ENSACIG00000001200	zc3h13	88	72.024	Amphilophus_citrinellus
ENSGAFG00000005462	zc3h13	50	71.924	ENSATEG00000003937	zc3h13	51	71.746	Anabas_testudineus
ENSGAFG00000005462	zc3h13	71	57.101	ENSAPLG00000002707	ZC3H13	59	69.430	Anas_platyrhynchos
ENSGAFG00000005462	zc3h13	50	76.043	ENSCVAG00000014663	zc3h13	51	77.229	Cyprinodon_variegatus
ENSGAFG00000005462	zc3h13	90	69.220	ENSGACG00000015166	zc3h13	80	66.486	Gasterosteus_aculeatus
ENSGAFG00000005462	zc3h13	90	73.287	ENSKMAG00000010701	zc3h13	100	73.904	Kryptolebias_marmoratus
ENSGAFG00000005462	zc3h13	50	72.885	ENSORLG00000005201	zc3h13	50	72.271	Oryzias_latipes
ENSGAFG00000005462	zc3h13	50	71.814	ENSORLG00020016576	zc3h13	50	71.739	Oryzias_latipes_hni
ENSGAFG00000005462	zc3h13	50	72.856	ENSORLG00015014966	zc3h13	50	72.131	Oryzias_latipes_hsok
ENSGAFG00000005462	zc3h13	50	73.379	ENSOMEG00000007044	zc3h13	50	72.988	Oryzias_melastigma
ENSGAFG00000005462	zc3h13	62	66.079	ENSPCAG00000001146	ZC3H13	69	66.304	Procavia_capensis
ENSGAFG00000005462	zc3h13	68	82.979	ENSTNIG00000014523	zc3h13	93	82.609	Tetraodon_nigroviridis
ENSGAFG00000005462	zc3h13	91	42.266	ENSXETG00000014637	zc3h13	97	46.223	Xenopus_tropicalis
ENSGAFG00000005462	zc3h13	50	87.555	ENSXMAG00000012423	zc3h13	50	91.925	Xiphophorus_maculatus