EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000005477 (Gene tree)
Gene ID: -
Gene Symbol: rab4a
Alias: fc93b03|wu:fc93b03
Full Name: RAB4a%2C member RAS oncogene family
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 13337 bases
Position: chrNHOQ01002371.1:5205937-5219273
Accession: ZDB-GENE-040525-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000008061	MMR_HSR1	PF01926.23	0.00014	1	1
ENSGAFP00000008052	MMR_HSR1	PF01926.23	0.00016	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000008133	-	2581	-	ENSGAFP00000008052	225 (aa)	-	-
ENSGAFT00000008142	-	2180	-	ENSGAFP00000008061	213 (aa)	-	UPI000293A040

Gene Model

Click here to download ENSGAFG00000005477's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000005477's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000005477	rab4a	72	35.065	ENSGAFG00000007684	rab23	78	34.783
ENSGAFG00000005477	rab4a	83	34.054	ENSGAFG00000015135	rab36	74	33.679
ENSGAFG00000005477	rab4a	84	37.705	ENSGAFG00000021688	-	88	37.705
ENSGAFG00000005477	rab4a	80	54.386	ENSGAFG00000007102	rab11bb	77	54.386
ENSGAFG00000005477	rab4a	84	37.158	ENSGAFG00000020476	RAB7A	88	37.158
ENSGAFG00000005477	rab4a	86	44.022	ENSGAFG00000002790	rab18a	89	44.022
ENSGAFG00000005477	rab4a	80	32.749	ENSGAFG00000005188	rabl2	73	32.749
ENSGAFG00000005477	rab4a	86	38.830	ENSGAFG00000008183	si:dkey-34d22.5	85	38.830
ENSGAFG00000005477	rab4a	82	37.931	ENSGAFG00000019872	rab41	81	37.931
ENSGAFG00000005477	rab4a	99	42.254	ENSGAFG00000001289	rab1ab	100	42.254
ENSGAFG00000005477	rab4a	76	43.478	ENSGAFG00000000884	rab5c	78	41.860
ENSGAFG00000005477	rab4a	81	30.108	ENSGAFG00000018295	si:ch73-116o1.2	86	30.108
ENSGAFG00000005477	rab4a	76	34.857	ENSGAFG00000019659	rab33ba	74	34.637
ENSGAFG00000005477	rab4a	89	42.932	ENSGAFG00000008560	rab18b	92	42.932
ENSGAFG00000005477	rab4a	81	44.767	ENSGAFG00000014787	-	86	44.767
ENSGAFG00000005477	rab4a	85	32.984	ENSGAFG00000000629	RAB29	89	32.984
ENSGAFG00000005477	rab4a	77	38.372	ENSGAFG00000004099	rab9b	75	38.372
ENSGAFG00000005477	rab4a	72	30.519	ENSGAFG00000020906	rheb	84	30.519
ENSGAFG00000005477	rab4a	83	47.159	ENSGAFG00000019305	rab1ba	88	47.159
ENSGAFG00000005477	rab4a	68	44.000	ENSGAFG00000015249	-	63	44.000
ENSGAFG00000005477	rab4a	97	33.175	ENSGAFG00000021202	zgc:101559	85	33.175
ENSGAFG00000005477	rab4a	77	36.905	ENSGAFG00000018916	-	74	36.905
ENSGAFG00000005477	rab4a	74	41.139	ENSGAFG00000017270	rab6ba	76	41.139
ENSGAFG00000005477	rab4a	76	43.478	ENSGAFG00000011619	rab5aa	75	43.478
ENSGAFG00000005477	rab4a	98	54.028	ENSGAFG00000006846	rab2a	98	54.028
ENSGAFG00000005477	rab4a	81	33.708	ENSGAFG00000021765	kras	93	33.708
ENSGAFG00000005477	rab4a	82	38.857	ENSGAFG00000010916	rab6bb	84	38.857
ENSGAFG00000005477	rab4a	82	41.899	ENSGAFG00000014730	-	89	41.899
ENSGAFG00000005477	rab4a	99	43.396	ENSGAFG00000011713	rab25a	97	42.991
ENSGAFG00000005477	rab4a	76	33.333	ENSGAFG00000021814	hrasb	85	33.333
ENSGAFG00000005477	rab4a	79	40.698	ENSGAFG00000005388	si:dkey-16l2.16	82	40.000
ENSGAFG00000005477	rab4a	76	43.478	ENSGAFG00000003642	-	72	43.478
ENSGAFG00000005477	rab4a	77	36.310	ENSGAFG00000000591	rab9a	77	36.310
ENSGAFG00000005477	rab4a	81	32.386	ENSGAFG00000021738	rhebl1	93	32.203
ENSGAFG00000005477	rab4a	74	35.000	ENSGAFG00000012579	rab34a	60	35.000
ENSGAFG00000005477	rab4a	96	47.059	ENSGAFG00000016549	rab11a	94	47.059
ENSGAFG00000005477	rab4a	80	53.216	ENSGAFG00000005679	rab11ba	77	53.216
ENSGAFG00000005477	rab4a	80	40.588	ENSGAFG00000002756	rab15	80	40.588
ENSGAFG00000005477	rab4a	83	34.254	ENSGAFG00000020102	si:dkey-13a21.4	88	34.254
ENSGAFG00000005477	rab4a	89	35.938	ENSGAFG00000002141	rab42a	88	35.938
ENSGAFG00000005477	rab4a	78	40.936	ENSGAFG00000006356	rab6a	82	40.936
ENSGAFG00000005477	rab4a	58	30.159	ENSGAFG00000002547	arl5c	66	30.159
ENSGAFG00000005477	rab4a	89	42.188	ENSGAFG00000006932	-	90	42.188
ENSGAFG00000005477	rab4a	76	40.373	ENSGAFG00000001301	rab22a	83	40.373
ENSGAFG00000005477	rab4a	100	37.383	ENSGAFG00000017305	RAB15	100	37.383
ENSGAFG00000005477	rab4a	100	40.000	ENSGAFG00000004604	RAB39B	100	40.000
ENSGAFG00000005477	rab4a	75	55.625	ENSGAFG00000021725	rab11al	74	55.625
ENSGAFG00000005477	rab4a	83	46.591	ENSGAFG00000021724	rab25b	86	46.067
ENSGAFG00000005477	rab4a	100	42.254	ENSGAFG00000000918	-	99	42.254
ENSGAFG00000005477	rab4a	81	33.526	ENSGAFG00000010541	rras	87	33.526
ENSGAFG00000005477	rab4a	75	37.195	ENSGAFG00000015490	rab33a	59	37.195
ENSGAFG00000005477	rab4a	80	45.882	ENSGAFG00000015702	zgc:171927	68	45.882
ENSGAFG00000005477	rab4a	87	43.979	ENSGAFG00000020309	rab30	95	45.556

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000005477	rab4a	100	98.592	ENSCVAG00000010727	rab4a	100	98.592	Cyprinodon_variegatus
ENSGAFG00000005477	rab4a	100	94.366	ENSELUG00000014785	rab4a	100	94.366	Esox_lucius
ENSGAFG00000005477	rab4a	100	99.061	ENSFHEG00000010509	rab4a	100	99.061	Fundulus_heteroclitus
ENSGAFG00000005477	rab4a	100	97.196	ENSGACG00000016164	rab4a	98	97.196	Gasterosteus_aculeatus
ENSGAFG00000005477	rab4a	100	99.061	ENSKMAG00000020250	rab4a	100	99.061	Kryptolebias_marmoratus
ENSGAFG00000005477	rab4a	100	98.122	ENSLBEG00000003101	rab4a	100	98.122	Labrus_bergylta
ENSGAFG00000005477	rab4a	100	96.714	ENSMMOG00000015287	rab4a	100	97.196	Mola_mola
ENSGAFG00000005477	rab4a	100	100.000	ENSPFOG00000014630	rab4a	100	100.000	Poecilia_formosa
ENSGAFG00000005477	rab4a	100	100.000	ENSPLAG00000014563	rab4a	100	100.000	Poecilia_latipinna
ENSGAFG00000005477	rab4a	100	100.000	ENSPMEG00000012205	rab4a	100	100.000	Poecilia_mexicana
ENSGAFG00000005477	rab4a	100	100.000	ENSPREG00000010154	rab4a	100	100.000	Poecilia_reticulata
ENSGAFG00000005477	rab4a	100	94.366	ENSSFOG00015015336	rab4a	100	94.366	Scleropages_formosus
ENSGAFG00000005477	rab4a	100	100.000	ENSXMAG00000026193	rab4a	100	100.000	Xiphophorus_maculatus