EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000005860 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 24697 bases
Position: chrNHOQ01002301.1:1014679-1039375
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000008646	RRM_1	PF00076.22	1.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000008732	-	969	-	ENSGAFP00000008646	322 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000005860's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000005860's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000005860	-	90	71.160	ENSGAFG00000021522	MSI1	91	71.160
ENSGAFG00000005860	-	96	54.799	ENSGAFG00000006974	msi2a	99	54.799
ENSGAFG00000005860	-	55	31.313	ENSGAFG00000004116	HNRNPA3	71	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000005860	-	100	65.205	ENSG00000135097	MSI1	99	69.099	Homo_sapiens
ENSGAFG00000005860	-	100	73.684	ENSAPOG00000003191	MSI1	100	73.684	Acanthochromis_polyacanthus
ENSGAFG00000005860	-	100	75.000	ENSAPOG00000023458	-	100	75.000	Acanthochromis_polyacanthus
ENSGAFG00000005860	-	89	56.474	ENSAMEG00000013302	MSI1	100	56.474	Ailuropoda_melanoleuca
ENSGAFG00000005860	-	85	76.923	ENSACIG00000017754	-	75	73.333	Amphilophus_citrinellus
ENSGAFG00000005860	-	100	70.255	ENSAOCG00000003804	MSI1	100	70.255	Amphiprion_ocellaris
ENSGAFG00000005860	-	90	74.917	ENSAOCG00000009031	-	92	74.917	Amphiprion_ocellaris
ENSGAFG00000005860	-	100	70.255	ENSAPEG00000003245	MSI1	100	70.255	Amphiprion_percula
ENSGAFG00000005860	-	100	75.000	ENSAPEG00000006857	-	84	75.000	Amphiprion_percula
ENSGAFG00000005860	-	100	70.225	ENSATEG00000023779	-	100	70.225	Anabas_testudineus
ENSGAFG00000005860	-	100	78.338	ENSATEG00000017059	MSI1	100	78.338	Anabas_testudineus
ENSGAFG00000005860	-	100	65.385	ENSACAG00000002762	MSI1	100	66.209	Anolis_carolinensis
ENSGAFG00000005860	-	100	65.205	ENSANAG00000027151	MSI1	100	65.205	Aotus_nancymaae
ENSGAFG00000005860	-	80	62.284	ENSANAG00000027901	-	88	62.284	Aotus_nancymaae
ENSGAFG00000005860	-	100	75.499	ENSACLG00000000117	-	100	75.499	Astatotilapia_calliptera
ENSGAFG00000005860	-	100	70.621	ENSACLG00000011230	MSI1	100	70.621	Astatotilapia_calliptera
ENSGAFG00000005860	-	93	74.277	ENSAMXG00000038960	msi1	77	74.277	Astyanax_mexicanus
ENSGAFG00000005860	-	100	65.205	ENSBTAG00000009800	MSI1	97	71.975	Bos_taurus
ENSGAFG00000005860	-	100	65.205	ENSCJAG00000008578	MSI1	100	65.205	Callithrix_jacchus
ENSGAFG00000005860	-	100	64.932	ENSCAFG00000010283	MSI1	100	64.932	Canis_familiaris
ENSGAFG00000005860	-	89	68.269	ENSCAFG00020020585	MSI1	100	68.269	Canis_lupus_dingo
ENSGAFG00000005860	-	100	64.674	ENSCHIG00000024304	MSI1	100	64.674	Capra_hircus
ENSGAFG00000005860	-	91	67.062	ENSTSYG00000033949	MSI1	97	67.062	Carlito_syrichta
ENSGAFG00000005860	-	89	60.064	ENSCAPG00000003919	MSI1	89	60.064	Cavia_aperea
ENSGAFG00000005860	-	90	67.868	ENSCPOG00000012361	MSI1	97	67.868	Cavia_porcellus
ENSGAFG00000005860	-	100	65.205	ENSCCAG00000035567	MSI1	100	65.205	Cebus_capucinus
ENSGAFG00000005860	-	100	66.761	ENSCATG00000030019	MSI1	100	66.761	Cercocebus_atys
ENSGAFG00000005860	-	90	67.868	ENSCLAG00000011329	MSI1	97	67.868	Chinchilla_lanigera
ENSGAFG00000005860	-	74	65.060	ENSCSAG00000002265	MSI1	84	65.587	Chlorocebus_sabaeus
ENSGAFG00000005860	-	100	68.079	ENSCPBG00000011349	MSI1	100	68.079	Chrysemys_picta_bellii
ENSGAFG00000005860	-	89	68.389	ENSCANG00000040651	MSI1	100	68.389	Colobus_angolensis_palliatus
ENSGAFG00000005860	-	100	65.205	ENSCGRG00001018883	Msi1	100	65.205	Cricetulus_griseus_chok1gshd
ENSGAFG00000005860	-	90	68.373	ENSCGRG00000002191	Msi1	72	68.373	Cricetulus_griseus_crigri
ENSGAFG00000005860	-	90	78.000	ENSCSEG00000011032	MSI1	97	78.000	Cynoglossus_semilaevis
ENSGAFG00000005860	-	100	70.822	ENSCSEG00000005834	-	100	70.822	Cynoglossus_semilaevis
ENSGAFG00000005860	-	100	79.518	ENSCSEG00000008352	-	100	79.518	Cynoglossus_semilaevis
ENSGAFG00000005860	-	100	80.422	ENSCVAG00000009100	MSI1	100	80.422	Cyprinodon_variegatus
ENSGAFG00000005860	-	51	74.809	ENSCVAG00000017463	-	87	74.809	Cyprinodon_variegatus
ENSGAFG00000005860	-	95	78.114	ENSDARG00000010710	msi1	99	78.114	Danio_rerio
ENSGAFG00000005860	-	90	64.890	ENSDNOG00000005713	MSI1	92	64.890	Dasypus_novemcinctus
ENSGAFG00000005860	-	90	67.964	ENSDORG00000005610	Msi1	95	67.964	Dipodomys_ordii
ENSGAFG00000005860	-	89	65.653	ENSETEG00000004756	MSI1	100	65.653	Echinops_telfairi
ENSGAFG00000005860	-	100	68.786	ENSEASG00005004736	MSI1	100	68.786	Equus_asinus_asinus
ENSGAFG00000005860	-	100	65.205	ENSECAG00000017526	MSI1	100	65.205	Equus_caballus
ENSGAFG00000005860	-	90	71.246	ENSELUG00000023280	-	97	70.927	Esox_lucius
ENSGAFG00000005860	-	96	70.501	ENSELUG00000023219	MSI1	89	70.501	Esox_lucius
ENSGAFG00000005860	-	100	65.205	ENSFCAG00000011007	MSI1	100	65.205	Felis_catus
ENSGAFG00000005860	-	89	71.429	ENSFALG00000007574	MSI1	100	71.429	Ficedula_albicollis
ENSGAFG00000005860	-	89	68.085	ENSFDAG00000019586	MSI1	100	68.085	Fukomys_damarensis
ENSGAFG00000005860	-	100	85.886	ENSFHEG00000022446	MSI1	100	85.886	Fundulus_heteroclitus
ENSGAFG00000005860	-	100	74.096	ENSFHEG00000003560	-	100	74.096	Fundulus_heteroclitus
ENSGAFG00000005860	-	100	61.667	ENSGMOG00000017838	-	100	61.667	Gadus_morhua
ENSGAFG00000005860	-	100	73.219	ENSGMOG00000001006	MSI1	99	72.934	Gadus_morhua
ENSGAFG00000005860	-	99	61.600	ENSGALG00000007227	MSI1	98	61.600	Gallus_gallus
ENSGAFG00000005860	-	100	76.577	ENSGACG00000012679	MSI1	100	76.577	Gasterosteus_aculeatus
ENSGAFG00000005860	-	100	63.736	ENSGACG00000008674	-	100	63.736	Gasterosteus_aculeatus
ENSGAFG00000005860	-	100	71.940	ENSGAGG00000016037	MSI1	100	71.940	Gopherus_agassizii
ENSGAFG00000005860	-	89	68.254	ENSGGOG00000010328	MSI1	100	68.254	Gorilla_gorilla
ENSGAFG00000005860	-	100	75.499	ENSHBUG00000011841	-	100	75.499	Haplochromis_burtoni
ENSGAFG00000005860	-	100	70.621	ENSHBUG00000021921	MSI1	100	70.621	Haplochromis_burtoni
ENSGAFG00000005860	-	100	64.932	ENSHGLG00000012782	MSI1	100	64.932	Heterocephalus_glaber_female
ENSGAFG00000005860	-	89	68.085	ENSHGLG00100016848	MSI1	100	68.085	Heterocephalus_glaber_male
ENSGAFG00000005860	-	100	78.144	ENSHCOG00000012067	-	100	78.144	Hippocampus_comes
ENSGAFG00000005860	-	90	74.333	ENSHCOG00000012019	MSI1	97	74.333	Hippocampus_comes
ENSGAFG00000005860	-	100	68.466	ENSIPUG00000001976	msi1	98	76.589	Ictalurus_punctatus
ENSGAFG00000005860	-	89	68.269	ENSSTOG00000009799	MSI1	100	68.269	Ictidomys_tridecemlineatus
ENSGAFG00000005860	-	100	58.551	ENSJJAG00000010643	-	100	58.551	Jaculus_jaculus
ENSGAFG00000005860	-	100	66.111	ENSJJAG00000010463	Msi1	100	66.111	Jaculus_jaculus
ENSGAFG00000005860	-	100	74.644	ENSKMAG00000011251	MSI1	100	74.644	Kryptolebias_marmoratus
ENSGAFG00000005860	-	90	75.667	ENSKMAG00000019877	-	97	75.667	Kryptolebias_marmoratus
ENSGAFG00000005860	-	100	79.279	ENSLBEG00000008789	MSI1	100	79.279	Labrus_bergylta
ENSGAFG00000005860	-	100	70.538	ENSLBEG00000001375	-	100	70.538	Labrus_bergylta
ENSGAFG00000005860	-	90	68.580	ENSLACG00000018287	MSI1	97	68.580	Latimeria_chalumnae
ENSGAFG00000005860	-	89	62.745	ENSLAFG00000009412	MSI1	100	62.745	Loxodonta_africana
ENSGAFG00000005860	-	90	67.868	ENSMFAG00000001798	MSI1	97	67.868	Macaca_fascicularis
ENSGAFG00000005860	-	90	67.868	ENSMMUG00000031527	MSI1	92	67.868	Macaca_mulatta
ENSGAFG00000005860	-	100	68.786	ENSMNEG00000040034	MSI1	100	68.786	Macaca_nemestrina
ENSGAFG00000005860	-	89	68.389	ENSMLEG00000003921	MSI1	100	68.389	Mandrillus_leucophaeus
ENSGAFG00000005860	-	100	74.644	ENSMAMG00000002279	MSI1	100	74.644	Mastacembelus_armatus
ENSGAFG00000005860	-	100	69.688	ENSMAMG00000018426	-	100	69.688	Mastacembelus_armatus
ENSGAFG00000005860	-	100	79.819	ENSMZEG00005000340	-	100	79.819	Maylandia_zebra
ENSGAFG00000005860	-	100	70.621	ENSMZEG00005026892	MSI1	100	70.621	Maylandia_zebra
ENSGAFG00000005860	-	61	68.824	ENSMGAG00000016518	-	100	68.824	Meleagris_gallopavo
ENSGAFG00000005860	-	64	69.767	ENSMAUG00000016820	Msi1	88	69.767	Mesocricetus_auratus
ENSGAFG00000005860	-	100	65.833	ENSMICG00000033181	MSI1	100	65.833	Microcebus_murinus
ENSGAFG00000005860	-	100	64.932	ENSMOCG00000002286	Msi1	100	64.932	Microtus_ochrogaster
ENSGAFG00000005860	-	90	75.333	ENSMMOG00000010492	MSI1	90	75.333	Mola_mola
ENSGAFG00000005860	-	100	72.590	ENSMMOG00000012265	-	100	72.590	Mola_mola
ENSGAFG00000005860	-	89	53.313	ENSMODG00000003189	-	100	53.313	Monodelphis_domestica
ENSGAFG00000005860	-	100	75.214	ENSMALG00000017889	MSI1	100	75.214	Monopterus_albus
ENSGAFG00000005860	-	90	75.667	ENSMALG00000001426	-	97	75.667	Monopterus_albus
ENSGAFG00000005860	-	100	64.932	MGP_CAROLIEiJ_G0027626	Msi1	99	72.556	Mus_caroli
ENSGAFG00000005860	-	100	64.932	ENSMUSG00000054256	Msi1	99	72.556	Mus_musculus
ENSGAFG00000005860	-	100	67.139	MGP_PahariEiJ_G0024206	Msi1	99	72.830	Mus_pahari
ENSGAFG00000005860	-	100	64.932	MGP_SPRETEiJ_G0028624	Msi1	99	72.556	Mus_spretus
ENSGAFG00000005860	-	89	68.269	ENSMPUG00000003168	MSI1	100	68.269	Mustela_putorius_furo
ENSGAFG00000005860	-	89	64.985	ENSMLUG00000010313	MSI1	100	64.985	Myotis_lucifugus
ENSGAFG00000005860	-	90	68.373	ENSNGAG00000014508	Msi1	92	68.373	Nannospalax_galili
ENSGAFG00000005860	-	63	81.395	ENSNBRG00000018012	MSI1	91	81.395	Neolamprologus_brichardi
ENSGAFG00000005860	-	100	79.819	ENSNBRG00000000841	-	100	79.819	Neolamprologus_brichardi
ENSGAFG00000005860	-	89	68.966	ENSNLEG00000015636	MSI1	100	68.966	Nomascus_leucogenys
ENSGAFG00000005860	-	69	68.056	ENSMEUG00000015759	MSI1	88	68.056	Notamacropus_eugenii
ENSGAFG00000005860	-	85	68.730	ENSOPRG00000016879	MSI1	100	68.730	Ochotona_princeps
ENSGAFG00000005860	-	89	68.389	ENSODEG00000006328	MSI1	100	68.389	Octodon_degus
ENSGAFG00000005860	-	100	68.120	ENSONIG00000019452	-	100	68.120	Oreochromis_niloticus
ENSGAFG00000005860	-	100	95.588	ENSONIG00000011182	MSI1	83	95.588	Oreochromis_niloticus
ENSGAFG00000005860	-	89	68.269	ENSOCUG00000027716	MSI1	100	68.269	Oryctolagus_cuniculus
ENSGAFG00000005860	-	100	69.405	ENSORLG00000029593	MSI1	100	69.405	Oryzias_latipes
ENSGAFG00000005860	-	100	76.877	ENSORLG00000019978	-	100	76.877	Oryzias_latipes
ENSGAFG00000005860	-	100	69.405	ENSORLG00020008266	MSI1	94	75.667	Oryzias_latipes_hni
ENSGAFG00000005860	-	100	75.568	ENSORLG00020001208	-	71	75.568	Oryzias_latipes_hni
ENSGAFG00000005860	-	100	79.880	ENSORLG00015013672	-	76	79.880	Oryzias_latipes_hsok
ENSGAFG00000005860	-	100	69.405	ENSORLG00015003916	MSI1	94	75.667	Oryzias_latipes_hsok
ENSGAFG00000005860	-	100	75.568	ENSOMEG00000017536	MSI1	100	75.568	Oryzias_melastigma
ENSGAFG00000005860	-	100	70.255	ENSOMEG00000002272	-	100	70.255	Oryzias_melastigma
ENSGAFG00000005860	-	90	67.262	ENSOGAG00000003847	MSI1	92	67.262	Otolemur_garnettii
ENSGAFG00000005860	-	89	65.861	ENSOARG00000012097	MSI1	100	65.861	Ovis_aries
ENSGAFG00000005860	-	89	68.389	ENSPPAG00000043073	MSI1	100	68.389	Pan_paniscus
ENSGAFG00000005860	-	100	65.205	ENSPPRG00000000370	MSI1	100	65.205	Panthera_pardus
ENSGAFG00000005860	-	89	68.269	ENSPTIG00000008913	MSI1	100	68.269	Panthera_tigris_altaica
ENSGAFG00000005860	-	100	66.761	ENSPTRG00000005531	MSI1	100	66.761	Pan_troglodytes
ENSGAFG00000005860	-	100	64.932	ENSPANG00000006335	MSI1	100	64.932	Papio_anubis
ENSGAFG00000005860	-	100	75.602	ENSPKIG00000016497	MSI1	100	75.602	Paramormyrops_kingsleyae
ENSGAFG00000005860	-	100	70.655	ENSPKIG00000023575	-	100	70.655	Paramormyrops_kingsleyae
ENSGAFG00000005860	-	90	67.712	ENSPSIG00000011608	-	89	67.712	Pelodiscus_sinensis
ENSGAFG00000005860	-	86	81.185	ENSPMGG00000000514	MSI1	94	81.185	Periophthalmus_magnuspinnatus
ENSGAFG00000005860	-	90	58.255	ENSPMGG00000007743	-	98	54.518	Periophthalmus_magnuspinnatus
ENSGAFG00000005860	-	89	67.976	ENSPEMG00000010491	Msi1	93	67.976	Peromyscus_maniculatus_bairdii
ENSGAFG00000005860	-	90	88.542	ENSPFOG00000013113	MSI1	100	76.136	Poecilia_formosa
ENSGAFG00000005860	-	100	69.972	ENSPFOG00000008319	-	86	69.972	Poecilia_formosa
ENSGAFG00000005860	-	100	76.136	ENSPLAG00000014025	-	100	76.136	Poecilia_latipinna
ENSGAFG00000005860	-	100	69.972	ENSPLAG00000012431	-	97	69.972	Poecilia_latipinna
ENSGAFG00000005860	-	100	80.480	ENSPMEG00000012796	MSI1	100	80.480	Poecilia_mexicana
ENSGAFG00000005860	-	100	69.405	ENSPMEG00000007025	-	90	69.508	Poecilia_mexicana
ENSGAFG00000005860	-	89	77.517	ENSPREG00000021416	-	92	76.974	Poecilia_reticulata
ENSGAFG00000005860	-	100	65.312	ENSPPYG00000005027	MSI1	100	65.312	Pongo_abelii
ENSGAFG00000005860	-	69	63.212	ENSPCAG00000002300	MSI1	71	63.212	Procavia_capensis
ENSGAFG00000005860	-	100	65.833	ENSPCOG00000017341	MSI1	100	65.833	Propithecus_coquereli
ENSGAFG00000005860	-	69	77.982	ENSPVAG00000002225	MSI1	88	77.982	Pteropus_vampyrus
ENSGAFG00000005860	-	100	75.499	ENSPNYG00000002529	-	100	75.499	Pundamilia_nyererei
ENSGAFG00000005860	-	100	70.621	ENSPNYG00000004379	MSI1	100	70.621	Pundamilia_nyererei
ENSGAFG00000005860	-	100	72.673	ENSPNAG00000019337	msi1	100	72.673	Pygocentrus_nattereri
ENSGAFG00000005860	-	89	67.949	ENSRNOG00000001156	Msi1	100	67.949	Rattus_norvegicus
ENSGAFG00000005860	-	96	65.722	ENSRBIG00000036889	MSI1	100	68.269	Rhinopithecus_bieti
ENSGAFG00000005860	-	89	68.485	ENSRROG00000041076	MSI1	93	68.485	Rhinopithecus_roxellana
ENSGAFG00000005860	-	90	67.868	ENSSBOG00000030259	MSI1	95	67.868	Saimiri_boliviensis_boliviensis
ENSGAFG00000005860	-	89	57.980	ENSSHAG00000006834	MSI1	100	57.980	Sarcophilus_harrisii
ENSGAFG00000005860	-	89	79.592	ENSSFOG00015014964	-	90	79.592	Scleropages_formosus
ENSGAFG00000005860	-	90	76.744	ENSSFOG00015005350	MSI1	97	76.744	Scleropages_formosus
ENSGAFG00000005860	-	89	69.173	ENSSMAG00000009156	-	70	69.173	Scophthalmus_maximus
ENSGAFG00000005860	-	90	81.395	ENSSMAG00000018824	MSI1	98	81.395	Scophthalmus_maximus
ENSGAFG00000005860	-	100	70.822	ENSSDUG00000022697	-	100	70.822	Seriola_dumerili
ENSGAFG00000005860	-	100	75.000	ENSSDUG00000001027	MSI1	100	75.000	Seriola_dumerili
ENSGAFG00000005860	-	100	70.520	ENSSLDG00000018706	-	100	70.520	Seriola_lalandi_dorsalis
ENSGAFG00000005860	-	100	79.279	ENSSLDG00000016832	MSI1	100	79.279	Seriola_lalandi_dorsalis
ENSGAFG00000005860	-	100	67.797	ENSSPUG00000015741	MSI1	100	67.797	Sphenodon_punctatus
ENSGAFG00000005860	-	90	76.744	ENSSPAG00000013098	-	97	72.188	Stegastes_partitus
ENSGAFG00000005860	-	100	68.497	ENSSSCG00000029365	MSI1	100	68.497	Sus_scrofa
ENSGAFG00000005860	-	90	68.882	ENSTGUG00000009534	MSI1	97	68.882	Taeniopygia_guttata
ENSGAFG00000005860	-	89	70.134	ENSTRUG00000015636	-	79	70.134	Takifugu_rubripes
ENSGAFG00000005860	-	63	85.965	ENSTRUG00000016249	MSI1	97	85.965	Takifugu_rubripes
ENSGAFG00000005860	-	99	54.252	ENSTNIG00000019814	-	99	54.252	Tetraodon_nigroviridis
ENSGAFG00000005860	-	100	70.904	ENSTNIG00000011469	MSI1	100	70.904	Tetraodon_nigroviridis
ENSGAFG00000005860	-	90	57.407	ENSTBEG00000007182	MSI1	99	57.407	Tupaia_belangeri
ENSGAFG00000005860	-	70	66.537	ENSTTRG00000005663	MSI1	75	66.537	Tursiops_truncatus
ENSGAFG00000005860	-	70	66.055	ENSUAMG00000015514	MSI1	85	70.619	Ursus_americanus
ENSGAFG00000005860	-	89	68.896	ENSUMAG00000006176	MSI1	88	68.896	Ursus_maritimus
ENSGAFG00000005860	-	90	69.419	ENSVVUG00000020993	MSI1	99	67.976	Vulpes_vulpes
ENSGAFG00000005860	-	100	66.667	ENSXETG00000012216	msi1	100	66.667	Xenopus_tropicalis
ENSGAFG00000005860	-	90	67.550	ENSXCOG00000017605	MSI1	86	67.550	Xiphophorus_couchianus
ENSGAFG00000005860	-	100	69.688	ENSXMAG00000018237	-	100	69.688	Xiphophorus_maculatus
ENSGAFG00000005860	-	100	87.651	ENSXMAG00000027103	MSI1	100	87.651	Xiphophorus_maculatus