EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000006203 (Gene tree)
Gene ID: -
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 41062 bases
Position: chrNHOQ01000520.1:650119-691180
Accession: ZDB-GENE-030131-7119
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000009123	R3H	PF01424.22	9.8e-13	1	1
ENSGAFP00000009159	R3H	PF01424.22	1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000009213	-	3557	-	ENSGAFP00000009123	950 (aa)	-	-
ENSGAFT00000009249	-	3602	-	ENSGAFP00000009159	965 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000006203's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000006203's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000006203	r3hdm1	95	61.333	ENSG00000048991	R3HDM1	96	58.654	Homo_sapiens
ENSGAFG00000006203	r3hdm1	100	78.360	ENSAPOG00000020850	r3hdm1	98	76.670	Acanthochromis_polyacanthus
ENSGAFG00000006203	r3hdm1	94	49.675	ENSAMEG00000014886	R3HDM1	79	49.302	Ailuropoda_melanoleuca
ENSGAFG00000006203	r3hdm1	100	75.645	ENSAOCG00000005192	r3hdm1	100	75.645	Amphiprion_ocellaris
ENSGAFG00000006203	r3hdm1	100	81.379	ENSAPEG00000016108	r3hdm1	100	81.276	Amphiprion_percula
ENSGAFG00000006203	r3hdm1	100	76.264	ENSATEG00000000232	r3hdm1	100	75.748	Anabas_testudineus
ENSGAFG00000006203	r3hdm1	94	49.087	ENSAPLG00000015231	R3HDM1	78	48.922	Anas_platyrhynchos
ENSGAFG00000006203	r3hdm1	95	47.840	ENSACAG00000001676	R3HDM1	79	47.763	Anolis_carolinensis
ENSGAFG00000006203	r3hdm1	95	61.600	ENSANAG00000035334	R3HDM1	87	61.600	Aotus_nancymaae
ENSGAFG00000006203	r3hdm1	100	78.734	ENSACLG00000027282	r3hdm1	100	78.112	Astatotilapia_calliptera
ENSGAFG00000006203	r3hdm1	85	73.267	ENSAMXG00000012861	R3HDM1	90	51.295	Astyanax_mexicanus
ENSGAFG00000006203	r3hdm1	86	72.524	ENSAMXG00000003536	r3hdm1	77	74.257	Astyanax_mexicanus
ENSGAFG00000006203	r3hdm1	53	54.955	ENSAMXG00000020587	arpp21	55	55.157	Astyanax_mexicanus
ENSGAFG00000006203	r3hdm1	99	47.609	ENSBTAG00000013302	R3HDM1	89	45.833	Bos_taurus
ENSGAFG00000006203	r3hdm1	95	61.600	ENSCJAG00000011718	R3HDM1	87	61.600	Callithrix_jacchus
ENSGAFG00000006203	r3hdm1	94	49.892	ENSCAFG00000005075	R3HDM1	79	49.518	Canis_familiaris
ENSGAFG00000006203	r3hdm1	94	49.892	ENSCAFG00020016119	R3HDM1	79	61.319	Canis_lupus_dingo
ENSGAFG00000006203	r3hdm1	94	50.000	ENSCHIG00000020851	R3HDM1	79	49.077	Capra_hircus
ENSGAFG00000006203	r3hdm1	94	46.258	ENSCPOG00000012784	R3HDM1	91	59.152	Cavia_porcellus
ENSGAFG00000006203	r3hdm1	95	61.053	ENSCCAG00000027199	R3HDM1	87	61.053	Cebus_capucinus
ENSGAFG00000006203	r3hdm1	95	61.067	ENSCATG00000023642	R3HDM1	87	61.067	Cercocebus_atys
ENSGAFG00000006203	r3hdm1	94	47.975	ENSCLAG00000007962	R3HDM1	89	61.556	Chinchilla_lanigera
ENSGAFG00000006203	r3hdm1	94	47.225	ENSCSAG00000016356	R3HDM1	79	47.407	Chlorocebus_sabaeus
ENSGAFG00000006203	r3hdm1	79	67.188	ENSCHOG00000013638	R3HDM1	68	67.188	Choloepus_hoffmanni
ENSGAFG00000006203	r3hdm1	91	51.184	ENSCPBG00000009645	R3HDM1	87	50.621	Chrysemys_picta_bellii
ENSGAFG00000006203	r3hdm1	95	62.133	ENSCANG00000034748	R3HDM1	87	62.133	Colobus_angolensis_palliatus
ENSGAFG00000006203	r3hdm1	99	44.631	ENSCGRG00001012357	R3hdm1	86	44.631	Cricetulus_griseus_chok1gshd
ENSGAFG00000006203	r3hdm1	99	45.717	ENSCGRG00000012080	R3hdm1	100	60.410	Cricetulus_griseus_crigri
ENSGAFG00000006203	r3hdm1	100	64.608	ENSCSEG00000008944	r3hdm1	100	65.524	Cynoglossus_semilaevis
ENSGAFG00000006203	r3hdm1	100	82.010	ENSCVAG00000007582	r3hdm1	100	81.407	Cyprinodon_variegatus
ENSGAFG00000006203	r3hdm1	91	48.603	ENSDNOG00000000771	R3HDM1	76	48.444	Dasypus_novemcinctus
ENSGAFG00000006203	r3hdm1	94	45.633	ENSETEG00000013606	R3HDM1	79	46.220	Echinops_telfairi
ENSGAFG00000006203	r3hdm1	89	68.608	ENSEASG00005007392	R3HDM1	89	46.979	Equus_asinus_asinus
ENSGAFG00000006203	r3hdm1	89	68.608	ENSECAG00000019114	R3HDM1	89	45.747	Equus_caballus
ENSGAFG00000006203	r3hdm1	94	50.103	ENSELUG00000004909	R3HDM1	81	51.299	Esox_lucius
ENSGAFG00000006203	r3hdm1	90	51.559	ENSELUG00000014413	r3hdm1	83	52.556	Esox_lucius
ENSGAFG00000006203	r3hdm1	89	68.608	ENSFCAG00000027113	R3HDM1	78	68.608	Felis_catus
ENSGAFG00000006203	r3hdm1	77	49.298	ENSFALG00000013731	R3HDM1	75	48.912	Ficedula_albicollis
ENSGAFG00000006203	r3hdm1	94	47.308	ENSFDAG00000016478	R3HDM1	89	62.115	Fukomys_damarensis
ENSGAFG00000006203	r3hdm1	100	80.542	ENSFHEG00000018713	r3hdm1	100	80.542	Fundulus_heteroclitus
ENSGAFG00000006203	r3hdm1	65	58.458	ENSGMOG00000006042	-	80	54.758	Gadus_morhua
ENSGAFG00000006203	r3hdm1	90	60.000	ENSGALG00000012246	R3HDM1	84	65.132	Gallus_gallus
ENSGAFG00000006203	r3hdm1	95	73.646	ENSGACG00000014925	r3hdm1	92	72.860	Gasterosteus_aculeatus
ENSGAFG00000006203	r3hdm1	94	50.546	ENSGAGG00000007840	R3HDM1	83	46.821	Gopherus_agassizii
ENSGAFG00000006203	r3hdm1	95	61.333	ENSGGOG00000008156	R3HDM1	87	61.333	Gorilla_gorilla
ENSGAFG00000006203	r3hdm1	53	72.924	ENSHBUG00000015737	R3HDM1	99	72.924	Haplochromis_burtoni
ENSGAFG00000006203	r3hdm1	94	47.479	ENSHGLG00000015718	R3HDM1	100	59.932	Heterocephalus_glaber_female
ENSGAFG00000006203	r3hdm1	99	39.590	ENSHGLG00100015374	-	91	38.997	Heterocephalus_glaber_male
ENSGAFG00000006203	r3hdm1	99	44.581	ENSHGLG00100003184	-	100	60.274	Heterocephalus_glaber_male
ENSGAFG00000006203	r3hdm1	100	66.289	ENSHCOG00000013366	r3hdm1	100	65.464	Hippocampus_comes
ENSGAFG00000006203	r3hdm1	91	62.703	ENSIPUG00000013629	r3hdm1	88	61.892	Ictalurus_punctatus
ENSGAFG00000006203	r3hdm1	85	70.032	ENSIPUG00000001676	R3HDM1	93	52.973	Ictalurus_punctatus
ENSGAFG00000006203	r3hdm1	94	49.566	ENSSTOG00000007572	R3HDM1	100	59.727	Ictidomys_tridecemlineatus
ENSGAFG00000006203	r3hdm1	94	49.429	ENSLACG00000005334	R3HDM1	83	49.167	Latimeria_chalumnae
ENSGAFG00000006203	r3hdm1	94	53.088	ENSLOCG00000001641	r3hdm1	79	53.011	Lepisosteus_oculatus
ENSGAFG00000006203	r3hdm1	84	67.638	ENSLAFG00000009065	R3HDM1	79	47.767	Loxodonta_africana
ENSGAFG00000006203	r3hdm1	89	68.932	ENSMFAG00000030331	R3HDM1	87	61.333	Macaca_fascicularis
ENSGAFG00000006203	r3hdm1	95	61.333	ENSMMUG00000009844	R3HDM1	87	61.333	Macaca_mulatta
ENSGAFG00000006203	r3hdm1	89	68.932	ENSMNEG00000027793	R3HDM1	87	61.333	Macaca_nemestrina
ENSGAFG00000006203	r3hdm1	95	61.333	ENSMLEG00000043189	R3HDM1	87	61.333	Mandrillus_leucophaeus
ENSGAFG00000006203	r3hdm1	100	75.000	ENSMAMG00000004532	r3hdm1	100	74.303	Mastacembelus_armatus
ENSGAFG00000006203	r3hdm1	100	75.900	ENSMZEG00005003157	r3hdm1	100	75.300	Maylandia_zebra
ENSGAFG00000006203	r3hdm1	89	50.113	ENSMGAG00000012461	R3HDM1	78	48.537	Meleagris_gallopavo
ENSGAFG00000006203	r3hdm1	99	44.331	ENSMAUG00000010315	R3hdm1	100	60.410	Mesocricetus_auratus
ENSGAFG00000006203	r3hdm1	95	61.008	ENSMICG00000005900	-	87	61.008	Microcebus_murinus
ENSGAFG00000006203	r3hdm1	94	46.374	ENSMODG00000000923	R3HDM1	86	45.998	Monodelphis_domestica
ENSGAFG00000006203	r3hdm1	100	74.372	ENSMALG00000009000	r3hdm1	90	73.795	Monopterus_albus
ENSGAFG00000006203	r3hdm1	99	44.413	MGP_CAROLIEiJ_G0014543	R3hdm1	100	64.113	Mus_caroli
ENSGAFG00000006203	r3hdm1	99	44.693	ENSMUSG00000056211	R3hdm1	100	64.113	Mus_musculus
ENSGAFG00000006203	r3hdm1	99	44.268	MGP_PahariEiJ_G0027779	R3hdm1	100	64.113	Mus_pahari
ENSGAFG00000006203	r3hdm1	99	44.693	MGP_SPRETEiJ_G0015350	R3hdm1	100	64.113	Mus_spretus
ENSGAFG00000006203	r3hdm1	94	50.109	ENSMPUG00000002412	R3HDM1	79	49.516	Mustela_putorius_furo
ENSGAFG00000006203	r3hdm1	94	48.927	ENSMLUG00000013824	R3HDM1	79	49.036	Myotis_lucifugus
ENSGAFG00000006203	r3hdm1	95	61.333	ENSNLEG00000008622	R3HDM1	87	61.333	Nomascus_leucogenys
ENSGAFG00000006203	r3hdm1	88	45.050	ENSMEUG00000011784	R3HDM1	79	46.503	Notamacropus_eugenii
ENSGAFG00000006203	r3hdm1	94	47.016	ENSODEG00000008607	R3HDM1	100	58.305	Octodon_degus
ENSGAFG00000006203	r3hdm1	95	77.682	ENSONIG00000012017	r3hdm1	86	77.170	Oreochromis_niloticus
ENSGAFG00000006203	r3hdm1	94	48.544	ENSOANG00000007987	R3HDM1	79	48.807	Ornithorhynchus_anatinus
ENSGAFG00000006203	r3hdm1	94	49.620	ENSOCUG00000017366	R3HDM1	86	50.108	Oryctolagus_cuniculus
ENSGAFG00000006203	r3hdm1	100	72.037	ENSORLG00000004297	r3hdm1	100	71.830	Oryzias_latipes
ENSGAFG00000006203	r3hdm1	100	72.199	ENSORLG00015017355	r3hdm1	100	70.938	Oryzias_latipes_hsok
ENSGAFG00000006203	r3hdm1	52	71.719	ENSOMEG00000003882	-	100	72.089	Oryzias_melastigma
ENSGAFG00000006203	r3hdm1	94	49.729	ENSOGAG00000003136	R3HDM1	79	49.516	Otolemur_garnettii
ENSGAFG00000006203	r3hdm1	94	50.000	ENSOARG00000010788	R3HDM1	79	49.130	Ovis_aries
ENSGAFG00000006203	r3hdm1	95	61.333	ENSPPAG00000027858	R3HDM1	87	61.333	Pan_paniscus
ENSGAFG00000006203	r3hdm1	95	61.600	ENSPPRG00000002626	R3HDM1	87	61.600	Panthera_pardus
ENSGAFG00000006203	r3hdm1	95	61.867	ENSPTIG00000016581	R3HDM1	87	61.867	Panthera_tigris_altaica
ENSGAFG00000006203	r3hdm1	95	61.333	ENSPTRG00000012494	R3HDM1	87	61.333	Pan_troglodytes
ENSGAFG00000006203	r3hdm1	95	61.333	ENSPANG00000026448	R3HDM1	87	61.333	Papio_anubis
ENSGAFG00000006203	r3hdm1	91	71.296	ENSPKIG00000004328	r3hdm1	80	70.370	Paramormyrops_kingsleyae
ENSGAFG00000006203	r3hdm1	94	49.022	ENSPSIG00000012915	R3HDM1	78	49.457	Pelodiscus_sinensis
ENSGAFG00000006203	r3hdm1	94	47.242	ENSPEMG00000015187	R3hdm1	100	60.068	Peromyscus_maniculatus_bairdii
ENSGAFG00000006203	r3hdm1	94	40.041	ENSPMAG00000003369	-	92	39.563	Petromyzon_marinus
ENSGAFG00000006203	r3hdm1	90	68.932	ENSPCIG00000002491	R3HDM1	88	46.101	Phascolarctos_cinereus
ENSGAFG00000006203	r3hdm1	100	86.654	ENSPFOG00000015036	r3hdm1	100	86.170	Poecilia_formosa
ENSGAFG00000006203	r3hdm1	100	93.717	ENSPLAG00000018042	r3hdm1	100	93.194	Poecilia_latipinna
ENSGAFG00000006203	r3hdm1	100	93.305	ENSPMEG00000023947	r3hdm1	100	92.782	Poecilia_mexicana
ENSGAFG00000006203	r3hdm1	100	93.691	ENSPREG00000007902	r3hdm1	100	93.691	Poecilia_reticulata
ENSGAFG00000006203	r3hdm1	94	48.152	ENSPPYG00000012815	R3HDM1	79	48.009	Pongo_abelii
ENSGAFG00000006203	r3hdm1	87	70.796	ENSPCAG00000006208	R3HDM1	67	70.485	Procavia_capensis
ENSGAFG00000006203	r3hdm1	85	71.119	ENSPCOG00000012698	R3HDM1	79	71.119	Propithecus_coquereli
ENSGAFG00000006203	r3hdm1	94	42.764	ENSPVAG00000006098	R3HDM1	79	43.333	Pteropus_vampyrus
ENSGAFG00000006203	r3hdm1	61	53.101	ENSPNAG00000004162	arpp21	79	52.344	Pygocentrus_nattereri
ENSGAFG00000006203	r3hdm1	82	73.927	ENSPNAG00000013952	r3hdm1	77	73.927	Pygocentrus_nattereri
ENSGAFG00000006203	r3hdm1	85	71.617	ENSPNAG00000005436	R3HDM1	88	70.957	Pygocentrus_nattereri
ENSGAFG00000006203	r3hdm1	99	44.331	ENSRNOG00000004099	R3hdm1	89	44.424	Rattus_norvegicus
ENSGAFG00000006203	r3hdm1	85	71.223	ENSRBIG00000033317	R3HDM1	86	71.223	Rhinopithecus_bieti
ENSGAFG00000006203	r3hdm1	95	61.333	ENSRROG00000034534	R3HDM1	87	61.333	Rhinopithecus_roxellana
ENSGAFG00000006203	r3hdm1	95	62.133	ENSSBOG00000020389	R3HDM1	87	62.133	Saimiri_boliviensis_boliviensis
ENSGAFG00000006203	r3hdm1	99	47.624	ENSSHAG00000016999	R3HDM1	88	47.422	Sarcophilus_harrisii
ENSGAFG00000006203	r3hdm1	100	50.740	ENSSFOG00015014134	r3hdm1	90	49.706	Scleropages_formosus
ENSGAFG00000006203	r3hdm1	100	46.997	ENSSFOG00015019851	-	94	53.115	Scleropages_formosus
ENSGAFG00000006203	r3hdm1	100	73.961	ENSSMAG00000001669	r3hdm1	90	73.684	Scophthalmus_maximus
ENSGAFG00000006203	r3hdm1	100	78.776	ENSSDUG00000010749	r3hdm1	100	78.673	Seriola_dumerili
ENSGAFG00000006203	r3hdm1	100	76.862	ENSSLDG00000004499	r3hdm1	90	76.587	Seriola_lalandi_dorsalis
ENSGAFG00000006203	r3hdm1	94	48.534	ENSSPUG00000004167	R3HDM1	78	48.531	Sphenodon_punctatus
ENSGAFG00000006203	r3hdm1	100	80.286	ENSSPAG00000004648	r3hdm1	100	80.082	Stegastes_partitus
ENSGAFG00000006203	r3hdm1	95	58.871	ENSSSCG00000015692	R3HDM1	87	58.871	Sus_scrofa
ENSGAFG00000006203	r3hdm1	90	49.377	ENSTGUG00000011750	R3HDM1	79	48.373	Taeniopygia_guttata
ENSGAFG00000006203	r3hdm1	100	70.660	ENSTRUG00000011654	r3hdm1	99	70.355	Takifugu_rubripes
ENSGAFG00000006203	r3hdm1	98	65.253	ENSTNIG00000010362	r3hdm1	99	65.152	Tetraodon_nigroviridis
ENSGAFG00000006203	r3hdm1	94	47.926	ENSTTRG00000003935	R3HDM1	79	48.370	Tursiops_truncatus
ENSGAFG00000006203	r3hdm1	73	62.667	ENSUAMG00000024806	R3HDM1	93	61.867	Ursus_americanus
ENSGAFG00000006203	r3hdm1	95	61.867	ENSUMAG00000005552	R3HDM1	87	61.867	Ursus_maritimus
ENSGAFG00000006203	r3hdm1	87	49.652	ENSVPAG00000007333	R3HDM1	74	49.361	Vicugna_pacos
ENSGAFG00000006203	r3hdm1	95	60.582	ENSVVUG00000006457	R3HDM1	88	47.848	Vulpes_vulpes
ENSGAFG00000006203	r3hdm1	94	45.659	ENSXETG00000019330	r3hdm1	90	46.032	Xenopus_tropicalis
ENSGAFG00000006203	r3hdm1	78	89.651	ENSXCOG00000017448	r3hdm1	92	89.730	Xiphophorus_couchianus
ENSGAFG00000006203	r3hdm1	100	96.000	ENSXMAG00000007885	r3hdm1	99	95.959	Xiphophorus_maculatus