EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000006327 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 3542 bases
Position: chrNHOQ01000520.1:775141-778682
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000009300	RRM_1	PF00076.22	2.5e-31	1	2
ENSGAFP00000009300	RRM_1	PF00076.22	2.5e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000009396	-	1452	-	ENSGAFP00000009300	483 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000006327's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000006327's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000006327	pspc1	72	57.062	ENSGAFG00000014571	sfpq	57	58.559
ENSGAFG00000006327	pspc1	65	64.557	ENSGAFG00000011460	nono	69	64.557

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000006327	pspc1	67	78.154	ENSG00000121390	PSPC1	82	78.154	Homo_sapiens
ENSGAFG00000006327	pspc1	81	80.867	ENSAPOG00000015946	pspc1	96	69.121	Acanthochromis_polyacanthus
ENSGAFG00000006327	pspc1	67	78.154	ENSAMEG00000017420	PSPC1	62	78.154	Ailuropoda_melanoleuca
ENSGAFG00000006327	pspc1	86	72.222	ENSACIG00000018695	pspc1	77	72.772	Amphilophus_citrinellus
ENSGAFG00000006327	pspc1	81	81.378	ENSAOCG00000005279	pspc1	96	68.692	Amphiprion_ocellaris
ENSGAFG00000006327	pspc1	81	81.378	ENSAPEG00000015927	pspc1	96	68.692	Amphiprion_percula
ENSGAFG00000006327	pspc1	81	70.127	ENSATEG00000004878	pspc1	74	67.848	Anabas_testudineus
ENSGAFG00000006327	pspc1	65	70.662	ENSAPLG00000003643	SFPQ	56	70.833	Anas_platyrhynchos
ENSGAFG00000006327	pspc1	55	79.167	ENSAPLG00000006246	PSPC1	65	79.167	Anas_platyrhynchos
ENSGAFG00000006327	pspc1	81	68.080	ENSACAG00000002093	PSPC1	73	68.262	Anolis_carolinensis
ENSGAFG00000006327	pspc1	82	66.244	ENSANAG00000000059	PSPC1	98	66.244	Aotus_nancymaae
ENSGAFG00000006327	pspc1	83	73.697	ENSACLG00000027220	pspc1	82	72.167	Astatotilapia_calliptera
ENSGAFG00000006327	pspc1	81	69.095	ENSAMXG00000036881	pspc1	74	69.095	Astyanax_mexicanus
ENSGAFG00000006327	pspc1	81	68.702	ENSBTAG00000003934	PSPC1	62	77.846	Bos_taurus
ENSGAFG00000006327	pspc1	67	78.154	ENSCJAG00000004554	PSPC1	62	78.154	Callithrix_jacchus
ENSGAFG00000006327	pspc1	67	78.154	ENSCAFG00020002009	PSPC1	83	78.154	Canis_lupus_dingo
ENSGAFG00000006327	pspc1	81	68.702	ENSCHIG00000016708	PSPC1	62	77.846	Capra_hircus
ENSGAFG00000006327	pspc1	67	78.154	ENSCPOG00000000395	PSPC1	88	74.640	Cavia_porcellus
ENSGAFG00000006327	pspc1	67	78.154	ENSCCAG00000033498	PSPC1	62	78.154	Cebus_capucinus
ENSGAFG00000006327	pspc1	67	78.154	ENSCATG00000036434	PSPC1	90	77.914	Cercocebus_atys
ENSGAFG00000006327	pspc1	57	77.536	ENSCLAG00000005241	PSPC1	61	77.536	Chinchilla_lanigera
ENSGAFG00000006327	pspc1	72	74.499	ENSCHOG00000008913	PSPC1	66	74.640	Choloepus_hoffmanni
ENSGAFG00000006327	pspc1	67	77.231	ENSCPBG00000020859	PSPC1	62	77.231	Chrysemys_picta_bellii
ENSGAFG00000006327	pspc1	64	57.143	ENSCSAVG00000003533	-	53	60.072	Ciona_savignyi
ENSGAFG00000006327	pspc1	55	80.075	ENSCANG00000018948	PSPC1	87	80.075	Colobus_angolensis_palliatus
ENSGAFG00000006327	pspc1	72	75.072	ENSCGRG00001018368	Pspc1	66	75.072	Cricetulus_griseus_chok1gshd
ENSGAFG00000006327	pspc1	72	75.072	ENSCGRG00000011724	Pspc1	66	75.072	Cricetulus_griseus_crigri
ENSGAFG00000006327	pspc1	82	86.902	ENSCVAG00000007679	-	77	86.902	Cyprinodon_variegatus
ENSGAFG00000006327	pspc1	83	64.938	ENSDARG00000006621	pspc1	70	72.662	Danio_rerio
ENSGAFG00000006327	pspc1	68	77.439	ENSDNOG00000011078	PSPC1	66	74.499	Dasypus_novemcinctus
ENSGAFG00000006327	pspc1	70	71.676	ENSDORG00000016050	Pspc1	64	72.434	Dipodomys_ordii
ENSGAFG00000006327	pspc1	67	43.714	ENSEBUG00000010133	pspc1	82	45.768	Eptatretus_burgeri
ENSGAFG00000006327	pspc1	59	71.875	ENSEBUG00000003964	-	61	62.108	Eptatretus_burgeri
ENSGAFG00000006327	pspc1	67	78.154	ENSEASG00005000119	PSPC1	98	68.354	Equus_asinus_asinus
ENSGAFG00000006327	pspc1	67	78.154	ENSECAG00000017286	PSPC1	98	68.354	Equus_caballus
ENSGAFG00000006327	pspc1	54	68.077	ENSEEUG00000011288	-	52	66.667	Erinaceus_europaeus
ENSGAFG00000006327	pspc1	81	69.077	ENSELUG00000003746	pspc1	94	69.424	Esox_lucius
ENSGAFG00000006327	pspc1	68	77.676	ENSFCAG00000027841	PSPC1	83	78.154	Felis_catus
ENSGAFG00000006327	pspc1	67	77.231	ENSFALG00000008750	PSPC1	74	67.857	Ficedula_albicollis
ENSGAFG00000006327	pspc1	71	75.362	ENSFDAG00000002617	PSPC1	67	75.362	Fukomys_damarensis
ENSGAFG00000006327	pspc1	73	70.474	ENSGMOG00000015074	pspc1	69	70.474	Gadus_morhua
ENSGAFG00000006327	pspc1	67	77.231	ENSGALG00000017142	PSPC1	64	75.516	Gallus_gallus
ENSGAFG00000006327	pspc1	81	74.430	ENSGACG00000014901	pspc1	98	78.125	Gasterosteus_aculeatus
ENSGAFG00000006327	pspc1	67	77.231	ENSGAGG00000019164	PSPC1	62	77.231	Gopherus_agassizii
ENSGAFG00000006327	pspc1	67	78.154	ENSGGOG00000003414	PSPC1	82	78.154	Gorilla_gorilla
ENSGAFG00000006327	pspc1	81	82.143	ENSHBUG00000001139	pspc1	75	82.143	Haplochromis_burtoni
ENSGAFG00000006327	pspc1	67	78.154	ENSHGLG00000018811	PSPC1	62	78.154	Heterocephalus_glaber_female
ENSGAFG00000006327	pspc1	64	74.757	ENSHGLG00100007962	PSPC1	93	75.244	Heterocephalus_glaber_male
ENSGAFG00000006327	pspc1	75	76.309	ENSHCOG00000013251	pspc1	88	70.277	Hippocampus_comes
ENSGAFG00000006327	pspc1	81	69.873	ENSIPUG00000013192	pspc1	74	69.873	Ictalurus_punctatus
ENSGAFG00000006327	pspc1	81	68.782	ENSSTOG00000026833	PSPC1	98	68.782	Ictidomys_tridecemlineatus
ENSGAFG00000006327	pspc1	67	77.846	ENSJJAG00000018334	Pspc1	62	77.846	Jaculus_jaculus
ENSGAFG00000006327	pspc1	73	70.950	ENSKMAG00000013525	-	83	71.549	Kryptolebias_marmoratus
ENSGAFG00000006327	pspc1	80	75.321	ENSLBEG00000004474	pspc1	83	75.321	Labrus_bergylta
ENSGAFG00000006327	pspc1	59	75.874	ENSLACG00000010762	PSPC1	62	74.540	Latimeria_chalumnae
ENSGAFG00000006327	pspc1	81	71.939	ENSLOCG00000010832	pspc1	73	71.939	Lepisosteus_oculatus
ENSGAFG00000006327	pspc1	72	74.499	ENSLAFG00000010968	PSPC1	66	74.499	Loxodonta_africana
ENSGAFG00000006327	pspc1	67	78.154	ENSMFAG00000032728	PSPC1	95	75.882	Macaca_fascicularis
ENSGAFG00000006327	pspc1	68	78.049	ENSMMUG00000020262	PSPC1	94	74.499	Macaca_mulatta
ENSGAFG00000006327	pspc1	67	78.154	ENSMNEG00000027401	PSPC1	74	74.640	Macaca_nemestrina
ENSGAFG00000006327	pspc1	55	79.323	ENSMLEG00000039043	PSPC1	62	79.323	Mandrillus_leucophaeus
ENSGAFG00000006327	pspc1	81	76.845	ENSMAMG00000004333	pspc1	73	77.099	Mastacembelus_armatus
ENSGAFG00000006327	pspc1	83	73.697	ENSMZEG00005005726	pspc1	82	72.167	Maylandia_zebra
ENSGAFG00000006327	pspc1	56	77.778	ENSMGAG00000015134	PSPC1	66	77.778	Meleagris_gallopavo
ENSGAFG00000006327	pspc1	81	63.544	ENSMAUG00000021067	Pspc1	73	65.909	Mesocricetus_auratus
ENSGAFG00000006327	pspc1	73	74.716	ENSMICG00000013970	PSPC1	98	68.608	Microcebus_murinus
ENSGAFG00000006327	pspc1	72	74.785	ENSMOCG00000006060	Pspc1	66	74.785	Microtus_ochrogaster
ENSGAFG00000006327	pspc1	73	56.780	ENSMMOG00000004352	pspc1	64	54.775	Mola_mola
ENSGAFG00000006327	pspc1	72	74.785	ENSMODG00000008029	PSPC1	55	74.785	Monodelphis_domestica
ENSGAFG00000006327	pspc1	81	78.571	ENSMALG00000008914	pspc1	76	78.571	Monopterus_albus
ENSGAFG00000006327	pspc1	72	75.072	MGP_CAROLIEiJ_G0019341	Pspc1	84	67.347	Mus_caroli
ENSGAFG00000006327	pspc1	72	75.072	ENSMUSG00000021938	Pspc1	83	67.347	Mus_musculus
ENSGAFG00000006327	pspc1	72	75.072	MGP_PahariEiJ_G0030359	Pspc1	84	67.347	Mus_pahari
ENSGAFG00000006327	pspc1	72	75.072	MGP_SPRETEiJ_G0020232	Pspc1	84	67.347	Mus_spretus
ENSGAFG00000006327	pspc1	67	78.154	ENSMPUG00000013347	PSPC1	62	78.154	Mustela_putorius_furo
ENSGAFG00000006327	pspc1	67	77.134	ENSMLUG00000017663	PSPC1	64	75.811	Myotis_lucifugus
ENSGAFG00000006327	pspc1	72	74.499	ENSNGAG00000011271	Pspc1	66	74.499	Nannospalax_galili
ENSGAFG00000006327	pspc1	83	74.129	ENSNBRG00000014059	pspc1	94	71.990	Neolamprologus_brichardi
ENSGAFG00000006327	pspc1	67	78.154	ENSNLEG00000001294	PSPC1	62	78.154	Nomascus_leucogenys
ENSGAFG00000006327	pspc1	67	70.462	ENSODEG00000019012	-	66	70.317	Octodon_degus
ENSGAFG00000006327	pspc1	67	64.615	ENSODEG00000007817	-	64	59.207	Octodon_degus
ENSGAFG00000006327	pspc1	81	81.378	ENSONIG00000012010	pspc1	75	81.378	Oreochromis_niloticus
ENSGAFG00000006327	pspc1	55	79.545	ENSOANG00000009017	-	66	79.545	Ornithorhynchus_anatinus
ENSGAFG00000006327	pspc1	69	62.537	ENSOANG00000011381	-	70	60.227	Ornithorhynchus_anatinus
ENSGAFG00000006327	pspc1	67	78.154	ENSOCUG00000006153	PSPC1	64	75.434	Oryctolagus_cuniculus
ENSGAFG00000006327	pspc1	81	78.117	ENSORLG00000004232	-	76	78.372	Oryzias_latipes
ENSGAFG00000006327	pspc1	81	78.880	ENSORLG00020000578	PSPC1	76	74.809	Oryzias_latipes_hni
ENSGAFG00000006327	pspc1	81	78.372	ENSORLG00015017480	pspc1	76	78.626	Oryzias_latipes_hsok
ENSGAFG00000006327	pspc1	67	78.154	ENSOGAG00000012643	PSPC1	62	78.154	Otolemur_garnettii
ENSGAFG00000006327	pspc1	67	77.469	ENSOARG00000014163	PSPC1	66	74.383	Ovis_aries
ENSGAFG00000006327	pspc1	68	78.049	ENSPPAG00000009836	PSPC1	92	78.049	Pan_paniscus
ENSGAFG00000006327	pspc1	67	78.154	ENSPPRG00000008833	PSPC1	62	78.154	Panthera_pardus
ENSGAFG00000006327	pspc1	55	79.545	ENSPTIG00000016917	PSPC1	55	79.545	Panthera_tigris_altaica
ENSGAFG00000006327	pspc1	67	78.154	ENSPTRG00000005677	PSPC1	82	78.154	Pan_troglodytes
ENSGAFG00000006327	pspc1	67	78.154	ENSPANG00000001992	PSPC1	93	75.882	Papio_anubis
ENSGAFG00000006327	pspc1	81	71.106	ENSPKIG00000003578	pspc1	75	71.106	Paramormyrops_kingsleyae
ENSGAFG00000006327	pspc1	67	76.000	ENSPSIG00000005168	PSPC1	62	76.000	Pelodiscus_sinensis
ENSGAFG00000006327	pspc1	73	71.866	ENSPMGG00000015135	pspc1	98	71.629	Periophthalmus_magnuspinnatus
ENSGAFG00000006327	pspc1	72	74.785	ENSPEMG00000015214	Pspc1	66	74.785	Peromyscus_maniculatus_bairdii
ENSGAFG00000006327	pspc1	60	43.197	ENSPMAG00000004618	pspc1	89	43.197	Petromyzon_marinus
ENSGAFG00000006327	pspc1	72	74.785	ENSPCIG00000017680	PSPC1	66	74.785	Phascolarctos_cinereus
ENSGAFG00000006327	pspc1	80	95.897	ENSPFOG00000003362	pspc1	76	95.897	Poecilia_formosa
ENSGAFG00000006327	pspc1	81	95.696	ENSPLAG00000011540	pspc1	76	95.696	Poecilia_latipinna
ENSGAFG00000006327	pspc1	81	95.190	ENSPMEG00000008322	pspc1	76	95.190	Poecilia_mexicana
ENSGAFG00000006327	pspc1	81	94.430	ENSPREG00000007786	pspc1	76	94.430	Poecilia_reticulata
ENSGAFG00000006327	pspc1	67	78.154	ENSPPYG00000005186	PSPC1	68	78.154	Pongo_abelii
ENSGAFG00000006327	pspc1	72	74.286	ENSPCOG00000014364	PSPC1	70	74.148	Propithecus_coquereli
ENSGAFG00000006327	pspc1	68	77.134	ENSPVAG00000005036	PSPC1	65	74.855	Pteropus_vampyrus
ENSGAFG00000006327	pspc1	83	74.194	ENSPNYG00000008893	pspc1	82	72.660	Pundamilia_nyererei
ENSGAFG00000006327	pspc1	82	70.455	ENSPNAG00000016511	pspc1	83	70.960	Pygocentrus_nattereri
ENSGAFG00000006327	pspc1	72	74.785	ENSRNOG00000020782	Pspc1	74	74.785	Rattus_norvegicus
ENSGAFG00000006327	pspc1	71	74.352	ENSRBIG00000036057	PSPC1	96	73.803	Rhinopithecus_bieti
ENSGAFG00000006327	pspc1	70	75.588	ENSRROG00000036334	PSPC1	98	68.182	Rhinopithecus_roxellana
ENSGAFG00000006327	pspc1	55	80.075	ENSSBOG00000028172	PSPC1	89	78.676	Saimiri_boliviensis_boliviensis
ENSGAFG00000006327	pspc1	72	68.091	ENSSHAG00000004696	PSPC1	66	68.091	Sarcophilus_harrisii
ENSGAFG00000006327	pspc1	68	81.346	ENSSFOG00015001395	pspc1	69	81.346	Scleropages_formosus
ENSGAFG00000006327	pspc1	81	76.119	ENSSMAG00000001761	pspc1	94	73.643	Scophthalmus_maximus
ENSGAFG00000006327	pspc1	81	77.665	ENSSDUG00000010651	pspc1	72	79.695	Seriola_dumerili
ENSGAFG00000006327	pspc1	84	71.324	ENSSLDG00000004284	pspc1	82	69.734	Seriola_lalandi_dorsalis
ENSGAFG00000006327	pspc1	67	70.154	ENSSARG00000000888	PSPC1	66	67.529	Sorex_araneus
ENSGAFG00000006327	pspc1	70	65.192	ENSSPUG00000008550	PSPC1	74	60.100	Sphenodon_punctatus
ENSGAFG00000006327	pspc1	81	80.612	ENSSPAG00000001921	pspc1	73	80.612	Stegastes_partitus
ENSGAFG00000006327	pspc1	68	76.900	ENSSSCG00000009569	PSPC1	99	68.514	Sus_scrofa
ENSGAFG00000006327	pspc1	67	77.231	ENSTGUG00000011295	PSPC1	69	77.231	Taeniopygia_guttata
ENSGAFG00000006327	pspc1	81	71.173	ENSTRUG00000011335	pspc1	75	70.408	Takifugu_rubripes
ENSGAFG00000006327	pspc1	81	72.449	ENSTNIG00000010358	pspc1	78	74.271	Tetraodon_nigroviridis
ENSGAFG00000006327	pspc1	67	71.077	ENSTBEG00000002361	PSPC1	72	65.067	Tupaia_belangeri
ENSGAFG00000006327	pspc1	81	68.622	ENSTTRG00000003343	PSPC1	73	68.622	Tursiops_truncatus
ENSGAFG00000006327	pspc1	60	78.201	ENSUAMG00000012309	PSPC1	82	78.947	Ursus_americanus
ENSGAFG00000006327	pspc1	67	77.846	ENSUMAG00000013993	PSPC1	91	77.607	Ursus_maritimus
ENSGAFG00000006327	pspc1	55	79.924	ENSVPAG00000010029	PSPC1	66	79.924	Vicugna_pacos
ENSGAFG00000006327	pspc1	68	77.812	ENSVVUG00000006414	PSPC1	84	78.154	Vulpes_vulpes
ENSGAFG00000006327	pspc1	88	95.035	ENSXCOG00000017438	pspc1	100	95.035	Xiphophorus_couchianus
ENSGAFG00000006327	pspc1	88	95.508	ENSXMAG00000007929	pspc1	100	95.508	Xiphophorus_maculatus