EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000006770 (Gene tree)
Gene ID: -
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1 associated protein 1b
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 5376 bases
Position: chrNHOQ01001318.1:1068983-1074358
Accession: ZDB-GENE-040426-2386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000009979	RRM_1	PF00076.22	1e-31	1	2
ENSGAFP00000009979	RRM_1	PF00076.22	1e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000010085	-	921	-	ENSGAFP00000009979	306 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000006770's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000006770's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000006770	trnau1apb	56	31.609	ENSGAFG00000011317	-	68	31.609
ENSGAFG00000006770	trnau1apb	56	57.558	ENSGAFG00000004928	trnau1apa	65	57.558
ENSGAFG00000006770	trnau1apb	56	36.145	ENSGAFG00000018195	pabpc4	76	35.897

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000006770	trnau1apb	100	80.968	ENSAPOG00000010086	trnau1apb	60	94.944	Acanthochromis_polyacanthus
ENSGAFG00000006770	trnau1apb	100	74.769	ENSACIG00000001863	trnau1apb	55	94.350	Amphilophus_citrinellus
ENSGAFG00000006770	trnau1apb	100	75.731	ENSAOCG00000011891	trnau1apb	52	94.915	Amphiprion_ocellaris
ENSGAFG00000006770	trnau1apb	100	76.547	ENSAPEG00000008029	trnau1apb	63	92.308	Amphiprion_percula
ENSGAFG00000006770	trnau1apb	100	74.344	ENSATEG00000002196	trnau1apb	52	95.480	Anabas_testudineus
ENSGAFG00000006770	trnau1apb	100	74.847	ENSACLG00000003016	trnau1apb	54	94.350	Astatotilapia_calliptera
ENSGAFG00000006770	trnau1apb	99	65.409	ENSAMXG00000001805	trnau1apb	57	84.358	Astyanax_mexicanus
ENSGAFG00000006770	trnau1apb	98	70.746	ENSCSEG00000018215	trnau1apb	52	94.915	Cynoglossus_semilaevis
ENSGAFG00000006770	trnau1apb	95	69.091	ENSCVAG00000017866	trnau1apb	100	67.576	Cyprinodon_variegatus
ENSGAFG00000006770	trnau1apb	99	61.783	ENSDARG00000056475	trnau1apb	57	82.682	Danio_rerio
ENSGAFG00000006770	trnau1apb	100	60.550	ENSELUG00000016683	trnau1apb	56	81.768	Esox_lucius
ENSGAFG00000006770	trnau1apb	100	76.081	ENSFHEG00000001267	trnau1apb	99	68.786	Fundulus_heteroclitus
ENSGAFG00000006770	trnau1apb	100	62.865	ENSGMOG00000001160	trnau1apb	53	89.831	Gadus_morhua
ENSGAFG00000006770	trnau1apb	100	68.060	ENSGACG00000014944	trnau1apb	53	94.350	Gasterosteus_aculeatus
ENSGAFG00000006770	trnau1apb	100	75.660	ENSHBUG00000018944	trnau1apb	100	70.915	Haplochromis_burtoni
ENSGAFG00000006770	trnau1apb	58	90.960	ENSHCOG00000011350	trnau1apb	57	90.960	Hippocampus_comes
ENSGAFG00000006770	trnau1apb	99	62.461	ENSIPUG00000008843	tsp1l	57	85.475	Ictalurus_punctatus
ENSGAFG00000006770	trnau1apb	100	72.700	ENSLBEG00000020480	trnau1apb	53	94.350	Labrus_bergylta
ENSGAFG00000006770	trnau1apb	100	54.140	ENSLOCG00000013175	trnau1apb	58	68.333	Lepisosteus_oculatus
ENSGAFG00000006770	trnau1apb	100	74.412	ENSMAMG00000012192	trnau1apb	52	94.915	Mastacembelus_armatus
ENSGAFG00000006770	trnau1apb	100	75.660	ENSMZEG00005014852	trnau1apb	52	94.350	Maylandia_zebra
ENSGAFG00000006770	trnau1apb	96	66.764	ENSMMOG00000021521	trnau1apb	78	78.351	Mola_mola
ENSGAFG00000006770	trnau1apb	99	76.923	ENSMALG00000003772	trnau1apb	59	94.944	Monopterus_albus
ENSGAFG00000006770	trnau1apb	97	74.684	ENSNBRG00000000751	trnau1apb	55	94.350	Neolamprologus_brichardi
ENSGAFG00000006770	trnau1apb	99	71.019	ENSONIG00000016639	trnau1apb	59	94.253	Oreochromis_niloticus
ENSGAFG00000006770	trnau1apb	67	83.010	ENSORLG00000013265	trnau1apb	99	62.717	Oryzias_latipes
ENSGAFG00000006770	trnau1apb	100	65.805	ENSORLG00020004464	trnau1apb	99	63.663	Oryzias_latipes_hni
ENSGAFG00000006770	trnau1apb	100	67.529	ENSORLG00015021098	trnau1apb	99	63.037	Oryzias_latipes_hsok
ENSGAFG00000006770	trnau1apb	67	83.010	ENSOMEG00000016531	trnau1apb	99	67.052	Oryzias_melastigma
ENSGAFG00000006770	trnau1apb	58	79.888	ENSPKIG00000007995	trnau1apb	60	78.409	Paramormyrops_kingsleyae
ENSGAFG00000006770	trnau1apb	99	66.885	ENSPMGG00000018509	trnau1apb	62	91.620	Periophthalmus_magnuspinnatus
ENSGAFG00000006770	trnau1apb	100	80.818	ENSPFOG00000003938	trnau1apb	99	69.653	Poecilia_formosa
ENSGAFG00000006770	trnau1apb	100	80.115	ENSPLAG00000015480	trnau1apb	99	69.653	Poecilia_latipinna
ENSGAFG00000006770	trnau1apb	100	80.115	ENSPMEG00000012743	trnau1apb	99	69.653	Poecilia_mexicana
ENSGAFG00000006770	trnau1apb	100	79.539	ENSPREG00000015035	trnau1apb	99	68.497	Poecilia_reticulata
ENSGAFG00000006770	trnau1apb	100	72.393	ENSPNYG00000012127	trnau1apb	54	89.831	Pundamilia_nyererei
ENSGAFG00000006770	trnau1apb	99	63.950	ENSPNAG00000019138	trnau1apb	56	84.358	Pygocentrus_nattereri
ENSGAFG00000006770	trnau1apb	99	55.977	ENSSFOG00015014158	trnau1apb	54	82.682	Scleropages_formosus
ENSGAFG00000006770	trnau1apb	99	73.607	ENSSDUG00000011109	trnau1apb	52	94.915	Seriola_dumerili
ENSGAFG00000006770	trnau1apb	99	73.684	ENSSLDG00000012947	trnau1apb	52	94.915	Seriola_lalandi_dorsalis
ENSGAFG00000006770	trnau1apb	100	75.439	ENSSPAG00000006917	trnau1apb	58	94.915	Stegastes_partitus
ENSGAFG00000006770	trnau1apb	100	71.885	ENSTRUG00000008608	trnau1apb	61	89.326	Takifugu_rubripes
ENSGAFG00000006770	trnau1apb	99	68.932	ENSTNIG00000000916	trnau1apb	59	91.954	Tetraodon_nigroviridis
ENSGAFG00000006770	trnau1apb	94	87.205	ENSXCOG00000007974	trnau1apb	54	99.367	Xiphophorus_couchianus
ENSGAFG00000006770	trnau1apb	100	80.980	ENSXMAG00000029918	trnau1apb	99	70.231	Xiphophorus_maculatus