EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000007751 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 3705 bases
Position: chrNHOQ01000749.1:1650879-1654583
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000011449	RRM_1	PF00076.22	2.6e-36	1	2
ENSGAFP00000011449	RRM_1	PF00076.22	2.6e-36	2	2
ENSGAFP00000011428	RRM_1	PF00076.22	2.9e-36	1	2
ENSGAFP00000011428	RRM_1	PF00076.22	2.9e-36	2	2
ENSGAFP00000011440	RRM_1	PF00076.22	2.9e-36	1	2
ENSGAFP00000011440	RRM_1	PF00076.22	2.9e-36	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000011558	-	2001	-	ENSGAFP00000011440	351 (aa)	-	-
ENSGAFT00000011546	-	1373	-	ENSGAFP00000011428	351 (aa)	-	-
ENSGAFT00000011567	-	1965	-	ENSGAFP00000011449	339 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000007751's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000007751's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000007751	-	56	81.481	ENSGAFG00000004116	HNRNPA3	68	73.043
ENSGAFG00000007751	-	56	31.532	ENSGAFG00000018195	pabpc4	76	34.409
ENSGAFG00000007751	-	68	40.084	ENSGAFG00000016803	-	64	52.804
ENSGAFG00000007751	-	51	38.961	ENSGAFG00000019917	rbmx	82	44.776
ENSGAFG00000007751	-	53	40.000	ENSGAFG00000003714	hnrnpd	82	38.627
ENSGAFG00000007751	-	69	35.319	ENSGAFG00000008331	hnrnpaba	65	35.526
ENSGAFG00000007751	-	62	42.614	ENSGAFG00000021522	MSI1	56	42.135
ENSGAFG00000007751	-	54	34.000	ENSGAFG00000019234	tardbpl	53	31.441
ENSGAFG00000007751	-	50	43.609	ENSGAFG00000006974	msi2a	78	43.182
ENSGAFG00000007751	-	76	45.000	ENSGAFG00000020326	-	53	45.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000007751	-	66	97.309	ENSAPOG00000019369	-	69	96.476	Acanthochromis_polyacanthus
ENSGAFG00000007751	-	52	56.497	ENSACIG00000021815	-	95	55.385	Amphilophus_citrinellus
ENSGAFG00000007751	-	66	97.309	ENSAOCG00000005289	-	68	96.889	Amphiprion_ocellaris
ENSGAFG00000007751	-	66	97.309	ENSAPEG00000004179	-	68	96.889	Amphiprion_percula
ENSGAFG00000007751	-	52	59.748	ENSATEG00000003423	-	75	59.748	Anabas_testudineus
ENSGAFG00000007751	-	90	89.836	ENSATEG00000022918	hnrnpa1a	92	95.431	Anabas_testudineus
ENSGAFG00000007751	-	54	56.593	ENSACAG00000017109	-	65	51.584	Anolis_carolinensis
ENSGAFG00000007751	-	66	95.133	ENSACLG00000006940	-	91	84.365	Astatotilapia_calliptera
ENSGAFG00000007751	-	53	63.842	ENSAMXG00000037730	-	64	58.824	Astyanax_mexicanus
ENSGAFG00000007751	-	54	85.165	ENSAMXG00000006296	hnrnpa1a	88	64.264	Astyanax_mexicanus
ENSGAFG00000007751	-	66	88.596	ENSCSEG00000007589	hnrnpa1a	83	82.667	Cynoglossus_semilaevis
ENSGAFG00000007751	-	54	54.190	ENSCSEG00000014051	-	73	53.672	Cynoglossus_semilaevis
ENSGAFG00000007751	-	100	97.640	ENSCVAG00000012637	hnrnpa1a	100	97.640	Cyprinodon_variegatus
ENSGAFG00000007751	-	56	81.250	ENSDARG00000011020	hnrnpa1a	86	62.388	Danio_rerio
ENSGAFG00000007751	-	58	56.281	ENSDORG00000026425	-	61	55.399	Dipodomys_ordii
ENSGAFG00000007751	-	57	88.660	ENSELUG00000007372	-	53	89.583	Esox_lucius
ENSGAFG00000007751	-	54	88.043	ENSGMOG00000017950	hnrnpa1a	50	87.568	Gadus_morhua
ENSGAFG00000007751	-	54	62.011	ENSGMOG00000020353	-	98	61.905	Gadus_morhua
ENSGAFG00000007751	-	62	89.888	ENSGACG00000009435	-	87	81.132	Gasterosteus_aculeatus
ENSGAFG00000007751	-	66	95.133	ENSHBUG00000005647	hnrnpa1a	91	84.039	Haplochromis_burtoni
ENSGAFG00000007751	-	57	84.021	ENSIPUG00000022440	-	74	84.393	Ictalurus_punctatus
ENSGAFG00000007751	-	54	63.277	ENSIPUG00000001991	-	80	62.304	Ictalurus_punctatus
ENSGAFG00000007751	-	59	82.090	ENSIPUG00000002023	hnrnpa1a	89	73.222	Ictalurus_punctatus
ENSGAFG00000007751	-	53	66.111	ENSJJAG00000009178	-	83	48.387	Jaculus_jaculus
ENSGAFG00000007751	-	100	90.643	ENSKMAG00000020859	-	68	96.916	Kryptolebias_marmoratus
ENSGAFG00000007751	-	66	91.593	ENSLBEG00000010010	hnrnpa1a	66	92.105	Labrus_bergylta
ENSGAFG00000007751	-	62	71.739	ENSMFAG00000028351	-	65	64.758	Macaca_fascicularis
ENSGAFG00000007751	-	66	95.964	ENSMAMG00000007606	-	66	95.556	Mastacembelus_armatus
ENSGAFG00000007751	-	66	95.133	ENSMZEG00005027173	hnrnpa1a	91	84.039	Maylandia_zebra
ENSGAFG00000007751	-	59	92.000	ENSMMOG00000008251	hnrnpa1a	97	84.615	Mola_mola
ENSGAFG00000007751	-	52	56.497	ENSMALG00000008886	-	93	56.545	Monopterus_albus
ENSGAFG00000007751	-	66	95.964	ENSMALG00000014091	hnrnpa1a	100	90.988	Monopterus_albus
ENSGAFG00000007751	-	90	86.319	ENSNBRG00000018441	-	91	86.645	Neolamprologus_brichardi
ENSGAFG00000007751	-	57	58.511	ENSNBRG00000014469	-	87	58.511	Neolamprologus_brichardi
ENSGAFG00000007751	-	53	51.977	ENSORLG00000029240	-	94	51.977	Oryzias_latipes
ENSGAFG00000007751	-	90	82.295	ENSORLG00000008001	-	90	82.951	Oryzias_latipes
ENSGAFG00000007751	-	53	51.977	ENSORLG00020022498	-	80	51.977	Oryzias_latipes_hni
ENSGAFG00000007751	-	88	42.282	ENSORLG00020006043	-	59	51.724	Oryzias_latipes_hni
ENSGAFG00000007751	-	90	82.295	ENSORLG00020006582	hnrnpa1a	98	94.737	Oryzias_latipes_hni
ENSGAFG00000007751	-	90	82.623	ENSORLG00015022294	-	90	83.279	Oryzias_latipes_hsok
ENSGAFG00000007751	-	100	83.041	ENSOMEG00000015959	-	90	84.262	Oryzias_melastigma
ENSGAFG00000007751	-	68	83.117	ENSPMGG00000011804	hnrnpa1a	79	88.889	Periophthalmus_magnuspinnatus
ENSGAFG00000007751	-	53	59.538	ENSPMGG00000016392	-	93	59.538	Periophthalmus_magnuspinnatus
ENSGAFG00000007751	-	100	99.118	ENSPFOG00000001825	-	100	99.118	Poecilia_formosa
ENSGAFG00000007751	-	100	99.118	ENSPMEG00000002425	-	100	99.118	Poecilia_mexicana
ENSGAFG00000007751	-	57	58.511	ENSPNYG00000020729	-	95	58.511	Pundamilia_nyererei
ENSGAFG00000007751	-	55	85.561	ENSPNAG00000021630	-	91	65.476	Pygocentrus_nattereri
ENSGAFG00000007751	-	55	82.979	ENSPNAG00000007752	hnrnpa1a	94	74.043	Pygocentrus_nattereri
ENSGAFG00000007751	-	52	56.250	ENSSMAG00000010246	-	83	56.915	Scophthalmus_maximus
ENSGAFG00000007751	-	62	90.995	ENSSMAG00000004641	hnrnpa1a	90	79.560	Scophthalmus_maximus
ENSGAFG00000007751	-	53	59.036	ENSSMAG00000010279	-	93	59.036	Scophthalmus_maximus
ENSGAFG00000007751	-	89	97.895	ENSSDUG00000013908	hnrnpa1a	95	86.697	Seriola_dumerili
ENSGAFG00000007751	-	52	60.819	ENSSDUG00000002431	-	81	60.819	Seriola_dumerili
ENSGAFG00000007751	-	89	98.361	ENSSLDG00000003718	hnrnpa1a	94	89.340	Seriola_lalandi_dorsalis
ENSGAFG00000007751	-	90	83.713	ENSSPAG00000018518	-	69	94.714	Stegastes_partitus
ENSGAFG00000007751	-	65	89.238	ENSTRUG00000020491	-	70	88.210	Takifugu_rubripes
ENSGAFG00000007751	-	55	60.989	ENSTNIG00000007398	-	88	54.348	Tetraodon_nigroviridis
ENSGAFG00000007751	-	81	82.909	ENSXCOG00000009001	-	100	82.182	Xiphophorus_couchianus
ENSGAFG00000007751	-	100	99.120	ENSXMAG00000008076	-	100	99.120	Xiphophorus_maculatus