EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSGAFG00000008016 (Gene tree)
Gene ID
-
Gene Symbol
CPSF3 (1 of many)
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Gambusia_affinis
Status
putative
Strand
Plus strand
Length
11975 bases
Position
chrNHOQ01001703.1:1608288-1620262
Accession
2326
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSGAFP00000011832CPSF73-100_CPF11718.84.3e-5511
ENSGAFP00000011832Beta-CaspPF10996.87.4e-3411
ENSGAFP00000011832Lactamase_BPF00753.279.6e-1911
ENSGAFP00000011832RMMBLPF07521.122.1e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSGAFT00000011952CPSF3 (1 of many)-2015397-ENSGAFP00000011832690 (aa)--
Gene Model
Click here to download ENSGAFG00000008016's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000008016's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSGAFG00000008016CPSF36933.267ENSGAFG00000019948ints118133.267
ENSGAFG00000008016CPSF39185.374ENSGAFG00000019449cpsf310079.420
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSGAFG00000008016CPSF39888.071ENSG00000119203CPSF310099.265Homo_sapiens
ENSGAFG00000008016CPSF37597.481ENSAPOG00000012241CPSF39297.481Acanthochromis_polyacanthus
ENSGAFG00000008016CPSF310088.696ENSAPOG00000022087cpsf310088.696Acanthochromis_polyacanthus
ENSGAFG00000008016CPSF39888.513ENSAMEG00000008493CPSF39988.513Ailuropoda_melanoleuca
ENSGAFG00000008016CPSF39193.819ENSACIG00000023663CPSF310086.975Amphilophus_citrinellus
ENSGAFG00000008016CPSF39184.921ENSACIG00000009846cpsf310079.016Amphilophus_citrinellus
ENSGAFG00000008016CPSF310095.797ENSAOCG00000010077CPSF310095.797Amphiprion_ocellaris
ENSGAFG00000008016CPSF310088.551ENSAOCG00000022056cpsf310089.968Amphiprion_ocellaris
ENSGAFG00000008016CPSF310095.797ENSAPEG00000021167CPSF310095.797Amphiprion_percula
ENSGAFG00000008016CPSF310088.696ENSAPEG00000019526cpsf39989.802Amphiprion_percula
ENSGAFG00000008016CPSF310088.116ENSATEG00000014525CPSF310088.116Anabas_testudineus
ENSGAFG00000008016CPSF39988.227ENSATEG00000003959cpsf39988.227Anabas_testudineus
ENSGAFG00000008016CPSF39788.060ENSAPLG00000006941CPSF39888.060Anas_platyrhynchos
ENSGAFG00000008016CPSF39285.400ENSACAG00000001759CPSF39985.400Anolis_carolinensis
ENSGAFG00000008016CPSF39882.622ENSANAG00000031254CPSF39983.033Aotus_nancymaae
ENSGAFG00000008016CPSF39788.589ENSACLG00000014484cpsf39988.589Astatotilapia_calliptera
ENSGAFG00000008016CPSF39194.295ENSACLG00000018846CPSF310087.265Astatotilapia_calliptera
ENSGAFG00000008016CPSF310088.986ENSAMXG00000004786cpsf310088.986Astyanax_mexicanus
ENSGAFG00000008016CPSF39888.365ENSBTAG00000019735CPSF39988.365Bos_taurus
ENSGAFG00000008016CPSF39058.044WBGene00013460cpsf-38958.044Caenorhabditis_elegans
ENSGAFG00000008016CPSF39888.071ENSCJAG00000006276CPSF39988.071Callithrix_jacchus
ENSGAFG00000008016CPSF39888.513ENSCAFG00000003375CPSF39588.513Canis_familiaris
ENSGAFG00000008016CPSF38990.747ENSCAFG00020026799CPSF39990.747Canis_lupus_dingo
ENSGAFG00000008016CPSF39888.365ENSCHIG00000013973CPSF39988.365Capra_hircus
ENSGAFG00000008016CPSF39888.071ENSTSYG00000002967CPSF39988.071Carlito_syrichta
ENSGAFG00000008016CPSF39688.120ENSCAPG00000013851CPSF39988.120Cavia_aperea
ENSGAFG00000008016CPSF39888.218ENSCPOG00000011299CPSF39988.218Cavia_porcellus
ENSGAFG00000008016CPSF39887.923ENSCCAG00000036730CPSF39987.923Cebus_capucinus
ENSGAFG00000008016CPSF39886.303ENSCATG00000014770CPSF39993.253Cercocebus_atys
ENSGAFG00000008016CPSF39888.218ENSCLAG00000002727CPSF39988.218Chinchilla_lanigera
ENSGAFG00000008016CPSF39880.118ENSCSAG00000007125CPSF39980.118Chlorocebus_sabaeus
ENSGAFG00000008016CPSF385100.000ENSCHOG00000000180CPSF38563.028Choloepus_hoffmanni
ENSGAFG00000008016CPSF39987.954ENSCPBG00000014074CPSF39987.954Chrysemys_picta_bellii
ENSGAFG00000008016CPSF39868.182ENSCING00000007214-9768.182Ciona_intestinalis
ENSGAFG00000008016CPSF39878.331ENSCANG00000034435CPSF39978.331Colobus_angolensis_palliatus
ENSGAFG00000008016CPSF39888.218ENSCGRG00001013134Cpsf39988.218Cricetulus_griseus_chok1gshd
ENSGAFG00000008016CPSF39888.218ENSCGRG00000018319Cpsf39988.218Cricetulus_griseus_crigri
ENSGAFG00000008016CPSF310092.185ENSCSEG00000002021CPSF310092.736Cynoglossus_semilaevis
ENSGAFG00000008016CPSF310096.667ENSCVAG00000015067CPSF310096.667Cyprinodon_variegatus
ENSGAFG00000008016CPSF310089.855ENSDARG00000027649cpsf310089.855Danio_rerio
ENSGAFG00000008016CPSF39887.353ENSDNOG00000008940CPSF39587.353Dasypus_novemcinctus
ENSGAFG00000008016CPSF39489.198ENSDORG00000014263Cpsf39989.198Dipodomys_ordii
ENSGAFG00000008016CPSF39965.893FBgn0261065Cpsf739965.893Drosophila_melanogaster
ENSGAFG00000008016CPSF39477.469ENSETEG00000003893CPSF39977.469Echinops_telfairi
ENSGAFG00000008016CPSF39976.305ENSEBUG00000009018cpsf39976.653Eptatretus_burgeri
ENSGAFG00000008016CPSF39888.513ENSEASG00005003970CPSF39988.513Equus_asinus_asinus
ENSGAFG00000008016CPSF39888.513ENSECAG00000019911CPSF39692.905Equus_caballus
ENSGAFG00000008016CPSF39872.901ENSEEUG00000015422CPSF39972.901Erinaceus_europaeus
ENSGAFG00000008016CPSF39991.001ENSELUG00000013775cpsf39991.001Esox_lucius
ENSGAFG00000008016CPSF39888.365ENSFCAG00000007852CPSF39988.365Felis_catus
ENSGAFG00000008016CPSF39387.907ENSFALG00000006572CPSF39987.907Ficedula_albicollis
ENSGAFG00000008016CPSF39887.482ENSFDAG00000006317CPSF39987.482Fukomys_damarensis
ENSGAFG00000008016CPSF35980.488ENSFHEG00000012186CPSF310080.488Fundulus_heteroclitus
ENSGAFG00000008016CPSF310087.246ENSFHEG00000014774cpsf310087.246Fundulus_heteroclitus
ENSGAFG00000008016CPSF310088.696ENSGMOG00000003157cpsf310088.696Gadus_morhua
ENSGAFG00000008016CPSF39987.627ENSGALG00000016424CPSF39987.627Gallus_gallus
ENSGAFG00000008016CPSF36884.154ENSGAGG00000025583CPSF39384.154Gopherus_agassizii
ENSGAFG00000008016CPSF39885.879ENSGGOG00000001757CPSF39197.854Gorilla_gorilla
ENSGAFG00000008016CPSF35989.136ENSHBUG00000014332CPSF310089.136Haplochromis_burtoni
ENSGAFG00000008016CPSF310088.406ENSHBUG00000001188cpsf310088.406Haplochromis_burtoni
ENSGAFG00000008016CPSF39888.071ENSHGLG00000000666CPSF39888.071Heterocephalus_glaber_female
ENSGAFG00000008016CPSF39888.071ENSHGLG00100007765CPSF39888.071Heterocephalus_glaber_male
ENSGAFG00000008016CPSF39987.791ENSHCOG00000007251cpsf39987.791Hippocampus_comes
ENSGAFG00000008016CPSF39993.750ENSHCOG00000015957CPSF39993.750Hippocampus_comes
ENSGAFG00000008016CPSF310088.116ENSIPUG00000023488cpsf310088.116Ictalurus_punctatus
ENSGAFG00000008016CPSF39888.071ENSSTOG00000004476CPSF39988.071Ictidomys_tridecemlineatus
ENSGAFG00000008016CPSF39887.629ENSJJAG00000023415Cpsf39987.629Jaculus_jaculus
ENSGAFG00000008016CPSF310095.942ENSKMAG00000007317CPSF310095.942Kryptolebias_marmoratus
ENSGAFG00000008016CPSF310087.101ENSKMAG00000002806cpsf310087.101Kryptolebias_marmoratus
ENSGAFG00000008016CPSF39595.890ENSLBEG00000013492CPSF39995.890Labrus_bergylta
ENSGAFG00000008016CPSF39981.567ENSLBEG00000020569cpsf39681.567Labrus_bergylta
ENSGAFG00000008016CPSF35483.065ENSLBEG00000015018-9983.065Labrus_bergylta
ENSGAFG00000008016CPSF310081.331ENSLACG00000008308CPSF310081.331Latimeria_chalumnae
ENSGAFG00000008016CPSF310090.332ENSLOCG00000016823cpsf310090.332Lepisosteus_oculatus
ENSGAFG00000008016CPSF39887.168ENSLAFG00000009467CPSF39987.168Loxodonta_africana
ENSGAFG00000008016CPSF39887.923ENSMFAG00000001339CPSF39495.010Macaca_fascicularis
ENSGAFG00000008016CPSF39387.442ENSMMUG00000018038CPSF39295.010Macaca_mulatta
ENSGAFG00000008016CPSF39097.600ENSMNEG00000039447CPSF39997.600Macaca_nemestrina
ENSGAFG00000008016CPSF39888.071ENSMLEG00000026825CPSF39297.854Mandrillus_leucophaeus
ENSGAFG00000008016CPSF39192.880ENSMAMG00000008835CPSF310086.272Mastacembelus_armatus
ENSGAFG00000008016CPSF310087.536ENSMAMG00000003076cpsf310087.536Mastacembelus_armatus
ENSGAFG00000008016CPSF310088.406ENSMZEG00005014358cpsf310088.406Maylandia_zebra
ENSGAFG00000008016CPSF310095.507ENSMZEG00005006258CPSF310095.507Maylandia_zebra
ENSGAFG00000008016CPSF39687.970ENSMGAG00000013995CPSF39987.970Meleagris_gallopavo
ENSGAFG00000008016CPSF35479.412ENSMAUG00000000166Cpsf39979.412Mesocricetus_auratus
ENSGAFG00000008016CPSF39883.186ENSMICG00000002363CPSF39983.186Microcebus_murinus
ENSGAFG00000008016CPSF39884.683ENSMOCG00000020067Cpsf39984.683Microtus_ochrogaster
ENSGAFG00000008016CPSF38071.726ENSMMOG00000011923CPSF38578.571Mola_mola
ENSGAFG00000008016CPSF39383.411ENSMMOG00000018212CPSF39883.411Mola_mola
ENSGAFG00000008016CPSF39886.880ENSMODG00000014703CPSF39986.880Monodelphis_domestica
ENSGAFG00000008016CPSF39290.923ENSMALG00000011474CPSF39990.923Monopterus_albus
ENSGAFG00000008016CPSF310088.696ENSMALG00000016416cpsf310088.696Monopterus_albus
ENSGAFG00000008016CPSF39888.513MGP_CAROLIEiJ_G0017640Cpsf39988.513Mus_caroli
ENSGAFG00000008016CPSF39888.513ENSMUSG00000054309Cpsf39697.881Mus_musculus
ENSGAFG00000008016CPSF39888.365MGP_PahariEiJ_G0029397Cpsf39988.365Mus_pahari
ENSGAFG00000008016CPSF39888.513MGP_SPRETEiJ_G0018481Cpsf39988.513Mus_spretus
ENSGAFG00000008016CPSF39888.529ENSMPUG00000013213CPSF39988.529Mustela_putorius_furo
ENSGAFG00000008016CPSF39888.235ENSMLUG00000010636CPSF39988.235Myotis_lucifugus
ENSGAFG00000008016CPSF39888.071ENSNGAG00000019836Cpsf39988.071Nannospalax_galili
ENSGAFG00000008016CPSF310088.116ENSNBRG00000004770cpsf310088.116Neolamprologus_brichardi
ENSGAFG00000008016CPSF39194.295ENSNBRG00000010525CPSF310087.265Neolamprologus_brichardi
ENSGAFG00000008016CPSF39887.923ENSNLEG00000013359CPSF39197.854Nomascus_leucogenys
ENSGAFG00000008016CPSF39857.437ENSMEUG00000013117-9957.437Notamacropus_eugenii
ENSGAFG00000008016CPSF39879.412ENSOPRG00000008902CPSF39979.412Ochotona_princeps
ENSGAFG00000008016CPSF39888.218ENSODEG00000003129CPSF39988.218Octodon_degus
ENSGAFG00000008016CPSF310088.696ENSONIG00000018812cpsf310088.696Oreochromis_niloticus
ENSGAFG00000008016CPSF38186.299ENSOANG00000008577CPSF39986.299Ornithorhynchus_anatinus
ENSGAFG00000008016CPSF39888.218ENSOCUG00000003728CPSF39988.218Oryctolagus_cuniculus
ENSGAFG00000008016CPSF310087.391ENSORLG00000018854cpsf310087.391Oryzias_latipes
ENSGAFG00000008016CPSF310087.246ENSORLG00020013331cpsf310087.246Oryzias_latipes_hni
ENSGAFG00000008016CPSF310087.391ENSORLG00015011017cpsf310087.391Oryzias_latipes_hsok
ENSGAFG00000008016CPSF310087.536ENSOMEG00000010647cpsf39687.536Oryzias_melastigma
ENSGAFG00000008016CPSF39877.909ENSOGAG00000001680CPSF39977.909Otolemur_garnettii
ENSGAFG00000008016CPSF39888.365ENSOARG00000015073CPSF39988.365Ovis_aries
ENSGAFG00000008016CPSF39888.071ENSPPAG00000042457CPSF39197.854Pan_paniscus
ENSGAFG00000008016CPSF39888.365ENSPPRG00000016790CPSF39988.365Panthera_pardus
ENSGAFG00000008016CPSF39888.496ENSPTIG00000003920CPSF39988.496Panthera_tigris_altaica
ENSGAFG00000008016CPSF39888.071ENSPTRG00000011638CPSF39197.854Pan_troglodytes
ENSGAFG00000008016CPSF39887.923ENSPANG00000016798CPSF39495.010Papio_anubis
ENSGAFG00000008016CPSF310091.594ENSPKIG00000023646cpsf310091.594Paramormyrops_kingsleyae
ENSGAFG00000008016CPSF39887.353ENSPSIG00000016144CPSF39987.353Pelodiscus_sinensis
ENSGAFG00000008016CPSF38288.007ENSPMGG00000006141-9980.892Periophthalmus_magnuspinnatus
ENSGAFG00000008016CPSF35989.383ENSPMGG00000015311CPSF310089.383Periophthalmus_magnuspinnatus
ENSGAFG00000008016CPSF39888.660ENSPEMG00000017668Cpsf39988.660Peromyscus_maniculatus_bairdii
ENSGAFG00000008016CPSF37989.908ENSPMAG00000004841cpsf310089.908Petromyzon_marinus
ENSGAFG00000008016CPSF39688.271ENSPCIG00000009823CPSF39888.650Phascolarctos_cinereus
ENSGAFG00000008016CPSF310099.275ENSPFOG00000010418-10099.275Poecilia_formosa
ENSGAFG00000008016CPSF310087.246ENSPFOG00000015922cpsf310087.246Poecilia_formosa
ENSGAFG00000008016CPSF35999.012ENSPLAG00000021300-10099.012Poecilia_latipinna
ENSGAFG00000008016CPSF310087.246ENSPLAG00000000882cpsf310087.246Poecilia_latipinna
ENSGAFG00000008016CPSF310087.391ENSPMEG00000018309cpsf310087.391Poecilia_mexicana
ENSGAFG00000008016CPSF39185.215ENSPREG00000014875cpsf310079.275Poecilia_reticulata
ENSGAFG00000008016CPSF310090.870ENSPREG00000004482CPSF310090.870Poecilia_reticulata
ENSGAFG00000008016CPSF39883.800ENSPPYG00000012666CPSF39983.800Pongo_abelii
ENSGAFG00000008016CPSF38465.913ENSPCAG00000015042CPSF38965.913Procavia_capensis
ENSGAFG00000008016CPSF38689.964ENSPCOG00000023016CPSF39789.964Propithecus_coquereli
ENSGAFG00000008016CPSF39888.235ENSPVAG00000005324CPSF39988.235Pteropus_vampyrus
ENSGAFG00000008016CPSF37896.310ENSPNYG00000021047CPSF39188.040Pundamilia_nyererei
ENSGAFG00000008016CPSF310088.406ENSPNYG00000004405cpsf310088.406Pundamilia_nyererei
ENSGAFG00000008016CPSF310089.130ENSPNAG00000023060cpsf310089.130Pygocentrus_nattereri
ENSGAFG00000008016CPSF39988.253ENSRNOG00000052418Cpsf39988.253Rattus_norvegicus
ENSGAFG00000008016CPSF39883.063ENSRBIG00000041615CPSF39984.031Rhinopithecus_bieti
ENSGAFG00000008016CPSF39888.071ENSRROG00000033792CPSF39988.071Rhinopithecus_roxellana
ENSGAFG00000008016CPSF38443.788YLR277CYSH18543.788Saccharomyces_cerevisiae
ENSGAFG00000008016CPSF39684.454ENSSBOG00000027263CPSF39784.454Saimiri_boliviensis_boliviensis
ENSGAFG00000008016CPSF39888.218ENSSHAG00000007024CPSF39988.218Sarcophilus_harrisii
ENSGAFG00000008016CPSF310091.014ENSSFOG00015002108cpsf310091.014Scleropages_formosus
ENSGAFG00000008016CPSF39593.455ENSSMAG00000020534CPSF39793.455Scophthalmus_maximus
ENSGAFG00000008016CPSF310095.072ENSSDUG00000018498CPSF310095.072Seriola_dumerili
ENSGAFG00000008016CPSF310088.551ENSSDUG00000002828cpsf39788.551Seriola_dumerili
ENSGAFG00000008016CPSF310088.696ENSSLDG00000008469cpsf39789.348Seriola_lalandi_dorsalis
ENSGAFG00000008016CPSF310095.072ENSSLDG00000005234CPSF310095.072Seriola_lalandi_dorsalis
ENSGAFG00000008016CPSF38984.181ENSSARG00000005186CPSF38984.181Sorex_araneus
ENSGAFG00000008016CPSF39686.099ENSSPUG00000015525CPSF39786.099Sphenodon_punctatus
ENSGAFG00000008016CPSF310089.130ENSSPAG00000018579cpsf310089.130Stegastes_partitus
ENSGAFG00000008016CPSF310095.652ENSSPAG00000002906CPSF310095.652Stegastes_partitus
ENSGAFG00000008016CPSF39888.513ENSSSCG00000020799CPSF39988.513Sus_scrofa
ENSGAFG00000008016CPSF39987.830ENSTGUG00000013016CPSF39987.830Taeniopygia_guttata
ENSGAFG00000008016CPSF39987.373ENSTRUG00000007030cpsf39887.373Takifugu_rubripes
ENSGAFG00000008016CPSF35978.571ENSTRUG00000013905CPSF310078.571Takifugu_rubripes
ENSGAFG00000008016CPSF38491.989ENSTBEG00000002707CPSF38491.989Tupaia_belangeri
ENSGAFG00000008016CPSF38674.939ENSTTRG00000000861CPSF38774.939Tursiops_truncatus
ENSGAFG00000008016CPSF39589.160ENSUAMG00000007535CPSF39489.160Ursus_americanus
ENSGAFG00000008016CPSF39388.062ENSUMAG00000003676CPSF39988.062Ursus_maritimus
ENSGAFG00000008016CPSF39288.013ENSVPAG00000008041CPSF310088.013Vicugna_pacos
ENSGAFG00000008016CPSF39888.513ENSVVUG00000002194CPSF39988.513Vulpes_vulpes
ENSGAFG00000008016CPSF39986.377ENSXETG00000008263cpsf39986.377Xenopus_tropicalis
ENSGAFG00000008016CPSF35498.656ENSXCOG00000000957-8798.656Xiphophorus_couchianus
ENSGAFG00000008016CPSF310087.536ENSXCOG00000019695cpsf310087.536Xiphophorus_couchianus
ENSGAFG00000008016CPSF310099.565ENSXMAG00000027291CPSF310099.565Xiphophorus_maculatus
ENSGAFG00000008016CPSF310087.391ENSXMAG00000009784cpsf310087.391Xiphophorus_maculatus

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