EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000008421 (Gene tree)
Gene ID: -
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 184667 bases
Position: chrNHOQ01002650.1:3014-187680
Accession: ZDB-GENE-030131-3124
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000012530	TUDOR	PF00567.24	4.8e-26	1	1
ENSGAFP00000012549	TUDOR	PF00567.24	5e-26	1	1
ENSGAFP00000012530	SNase	PF00565.17	1.9e-67	1	4
ENSGAFP00000012530	SNase	PF00565.17	1.9e-67	2	4
ENSGAFP00000012530	SNase	PF00565.17	1.9e-67	3	4
ENSGAFP00000012530	SNase	PF00565.17	1.9e-67	4	4
ENSGAFP00000012549	SNase	PF00565.17	2.3e-67	1	4
ENSGAFP00000012549	SNase	PF00565.17	2.3e-67	2	4
ENSGAFP00000012549	SNase	PF00565.17	2.3e-67	3	4
ENSGAFP00000012549	SNase	PF00565.17	2.3e-67	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000012679	-	3728	-	ENSGAFP00000012549	911 (aa)	-	-
ENSGAFT00000012660	-	3811	-	ENSGAFP00000012530	889 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000008421's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000008421's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000008421	snd1	99	85.118	ENSG00000197157	SND1	100	84.101	Homo_sapiens
ENSGAFG00000008421	snd1	100	96.597	ENSAPOG00000017599	snd1	100	96.597	Acanthochromis_polyacanthus
ENSGAFG00000008421	snd1	100	84.136	ENSAMEG00000004664	SND1	94	84.136	Ailuropoda_melanoleuca
ENSGAFG00000008421	snd1	100	92.426	ENSACIG00000003551	snd1	100	92.426	Amphilophus_citrinellus
ENSGAFG00000008421	snd1	100	96.268	ENSAOCG00000014166	snd1	100	96.268	Amphiprion_ocellaris
ENSGAFG00000008421	snd1	100	96.268	ENSAPEG00000007067	snd1	100	96.268	Amphiprion_percula
ENSGAFG00000008421	snd1	98	96.092	ENSATEG00000018475	snd1	89	95.638	Anabas_testudineus
ENSGAFG00000008421	snd1	99	85.214	ENSANAG00000034463	SND1	99	85.214	Aotus_nancymaae
ENSGAFG00000008421	snd1	100	94.731	ENSACLG00000022897	snd1	100	94.731	Astatotilapia_calliptera
ENSGAFG00000008421	snd1	99	91.001	ENSAMXG00000016318	snd1	99	90.440	Astyanax_mexicanus
ENSGAFG00000008421	snd1	99	85.344	ENSBTAG00000010692	SND1	100	84.430	Bos_taurus
ENSGAFG00000008421	snd1	99	47.170	WBGene00006626	tsn-1	99	46.724	Caenorhabditis_elegans
ENSGAFG00000008421	snd1	99	84.989	ENSCJAG00000017668	SND1	100	83.991	Callithrix_jacchus
ENSGAFG00000008421	snd1	100	84.430	ENSCAFG00000001700	SND1	100	84.430	Canis_familiaris
ENSGAFG00000008421	snd1	100	84.430	ENSCAFG00020021639	SND1	100	84.430	Canis_lupus_dingo
ENSGAFG00000008421	snd1	99	85.327	ENSCHIG00000023390	SND1	100	84.320	Capra_hircus
ENSGAFG00000008421	snd1	72	87.895	ENSTSYG00000004979	SND1	96	87.895	Carlito_syrichta
ENSGAFG00000008421	snd1	99	74.887	ENSCAPG00000010677	SND1	97	74.247	Cavia_aperea
ENSGAFG00000008421	snd1	99	85.006	ENSCPOG00000006251	SND1	100	84.101	Cavia_porcellus
ENSGAFG00000008421	snd1	99	85.214	ENSCCAG00000036847	SND1	100	84.211	Cebus_capucinus
ENSGAFG00000008421	snd1	99	85.327	ENSCATG00000035214	SND1	99	85.327	Cercocebus_atys
ENSGAFG00000008421	snd1	99	85.231	ENSCLAG00000011796	SND1	100	84.320	Chinchilla_lanigera
ENSGAFG00000008421	snd1	99	85.231	ENSCSAG00000010182	SND1	100	84.320	Chlorocebus_sabaeus
ENSGAFG00000008421	snd1	79	77.228	ENSCHOG00000002218	SND1	86	77.228	Choloepus_hoffmanni
ENSGAFG00000008421	snd1	100	84.303	ENSCPBG00000018094	SND1	100	84.303	Chrysemys_picta_bellii
ENSGAFG00000008421	snd1	99	56.013	ENSCING00000000524	-	99	55.700	Ciona_intestinalis
ENSGAFG00000008421	snd1	99	57.223	ENSCSAVG00000008807	-	99	56.565	Ciona_savignyi
ENSGAFG00000008421	snd1	99	85.231	ENSCANG00000035119	SND1	100	84.320	Colobus_angolensis_palliatus
ENSGAFG00000008421	snd1	99	84.555	ENSCGRG00001022514	Snd1	98	85.738	Cricetulus_griseus_chok1gshd
ENSGAFG00000008421	snd1	99	84.650	ENSCGRG00000012277	Snd1	99	84.650	Cricetulus_griseus_crigri
ENSGAFG00000008421	snd1	100	93.963	ENSCSEG00000008661	snd1	100	93.963	Cynoglossus_semilaevis
ENSGAFG00000008421	snd1	100	97.585	ENSCVAG00000010316	snd1	100	97.585	Cyprinodon_variegatus
ENSGAFG00000008421	snd1	99	90.428	ENSDARG00000006766	snd1	99	90.829	Danio_rerio
ENSGAFG00000008421	snd1	99	83.127	ENSDNOG00000006795	SND1	100	83.240	Dasypus_novemcinctus
ENSGAFG00000008421	snd1	99	85.006	ENSDORG00000000336	Snd1	100	84.101	Dipodomys_ordii
ENSGAFG00000008421	snd1	99	50.385	FBgn0035121	Tudor-SN	99	49.946	Drosophila_melanogaster
ENSGAFG00000008421	snd1	92	88.889	ENSETEG00000000375	SND1	92	88.889	Echinops_telfairi
ENSGAFG00000008421	snd1	62	65.183	ENSEBUG00000014201	-	84	77.174	Eptatretus_burgeri
ENSGAFG00000008421	snd1	99	83.814	ENSEASG00005008513	SND1	100	82.956	Equus_asinus_asinus
ENSGAFG00000008421	snd1	99	85.006	ENSECAG00000011451	SND1	100	83.991	Equus_caballus
ENSGAFG00000008421	snd1	99	75.417	ENSEEUG00000014737	SND1	100	74.671	Erinaceus_europaeus
ENSGAFG00000008421	snd1	99	89.414	ENSELUG00000001805	snd1	96	88.694	Esox_lucius
ENSGAFG00000008421	snd1	100	84.320	ENSFCAG00000008289	SND1	100	84.320	Felis_catus
ENSGAFG00000008421	snd1	99	84.780	ENSFDAG00000015881	SND1	100	83.882	Fukomys_damarensis
ENSGAFG00000008421	snd1	100	94.952	ENSFHEG00000004093	snd1	99	96.587	Fundulus_heteroclitus
ENSGAFG00000008421	snd1	75	84.181	ENSGMOG00000018932	snd1	66	84.181	Gadus_morhua
ENSGAFG00000008421	snd1	100	61.171	ENSGACG00000019793	snd1	100	61.171	Gasterosteus_aculeatus
ENSGAFG00000008421	snd1	99	85.327	ENSGGOG00000009614	SND1	99	85.327	Gorilla_gorilla
ENSGAFG00000008421	snd1	100	94.621	ENSHBUG00000019135	snd1	100	94.621	Haplochromis_burtoni
ENSGAFG00000008421	snd1	99	84.780	ENSHGLG00000003618	SND1	98	85.906	Heterocephalus_glaber_female
ENSGAFG00000008421	snd1	99	84.780	ENSHGLG00100012449	SND1	99	84.761	Heterocephalus_glaber_male
ENSGAFG00000008421	snd1	100	92.645	ENSHCOG00000005266	snd1	100	92.645	Hippocampus_comes
ENSGAFG00000008421	snd1	99	89.651	ENSIPUG00000013279	snd1	99	88.694	Ictalurus_punctatus
ENSGAFG00000008421	snd1	99	85.118	ENSSTOG00000002140	SND1	100	84.211	Ictidomys_tridecemlineatus
ENSGAFG00000008421	snd1	99	85.118	ENSJJAG00000009561	Snd1	100	84.211	Jaculus_jaculus
ENSGAFG00000008421	snd1	100	97.036	ENSKMAG00000016997	snd1	100	97.036	Kryptolebias_marmoratus
ENSGAFG00000008421	snd1	100	94.072	ENSLBEG00000013563	snd1	100	94.072	Labrus_bergylta
ENSGAFG00000008421	snd1	99	89.085	ENSLOCG00000015537	snd1	99	88.248	Lepisosteus_oculatus
ENSGAFG00000008421	snd1	100	84.430	ENSLAFG00000009696	SND1	100	84.430	Loxodonta_africana
ENSGAFG00000008421	snd1	99	85.327	ENSMFAG00000038114	SND1	99	85.327	Macaca_fascicularis
ENSGAFG00000008421	snd1	99	85.231	ENSMMUG00000015432	SND1	100	84.320	Macaca_mulatta
ENSGAFG00000008421	snd1	99	85.327	ENSMNEG00000039808	SND1	100	85.344	Macaca_nemestrina
ENSGAFG00000008421	snd1	99	85.214	ENSMLEG00000029040	SND1	100	85.231	Mandrillus_leucophaeus
ENSGAFG00000008421	snd1	100	94.731	ENSMAMG00000011739	snd1	100	94.731	Mastacembelus_armatus
ENSGAFG00000008421	snd1	100	94.731	ENSMZEG00005005681	snd1	100	94.731	Maylandia_zebra
ENSGAFG00000008421	snd1	99	85.118	ENSMICG00000000097	SND1	100	84.211	Microcebus_murinus
ENSGAFG00000008421	snd1	99	85.118	ENSMOCG00000005040	Snd1	100	84.211	Microtus_ochrogaster
ENSGAFG00000008421	snd1	100	94.731	ENSMMOG00000001795	snd1	100	94.731	Mola_mola
ENSGAFG00000008421	snd1	99	84.427	ENSMODG00000015182	SND1	100	83.553	Monodelphis_domestica
ENSGAFG00000008421	snd1	100	95.170	ENSMALG00000012071	snd1	100	95.170	Monopterus_albus
ENSGAFG00000008421	snd1	99	84.667	MGP_CAROLIEiJ_G0028159	Snd1	99	85.714	Mus_caroli
ENSGAFG00000008421	snd1	99	84.442	ENSMUSG00000001424	Snd1	100	83.553	Mus_musculus
ENSGAFG00000008421	snd1	99	84.667	MGP_PahariEiJ_G0021917	Snd1	100	85.714	Mus_pahari
ENSGAFG00000008421	snd1	99	84.667	MGP_SPRETEiJ_G0029159	Snd1	100	83.772	Mus_spretus
ENSGAFG00000008421	snd1	100	84.320	ENSMPUG00000006545	SND1	100	83.882	Mustela_putorius_furo
ENSGAFG00000008421	snd1	99	84.058	ENSMLUG00000017130	SND1	99	83.389	Myotis_lucifugus
ENSGAFG00000008421	snd1	99	85.006	ENSNGAG00000011186	Snd1	100	84.101	Nannospalax_galili
ENSGAFG00000008421	snd1	100	94.731	ENSNBRG00000006681	snd1	100	94.731	Neolamprologus_brichardi
ENSGAFG00000008421	snd1	100	84.320	ENSNLEG00000012263	SND1	99	86.387	Nomascus_leucogenys
ENSGAFG00000008421	snd1	92	88.889	ENSOPRG00000013405	SND1	92	88.889	Ochotona_princeps
ENSGAFG00000008421	snd1	99	85.231	ENSODEG00000011502	SND1	99	85.206	Octodon_degus
ENSGAFG00000008421	snd1	100	95.060	ENSONIG00000011481	snd1	97	95.060	Oreochromis_niloticus
ENSGAFG00000008421	snd1	99	84.537	ENSOANG00000000817	SND1	99	82.967	Ornithorhynchus_anatinus
ENSGAFG00000008421	snd1	99	84.442	ENSOCUG00000001620	SND1	99	83.626	Oryctolagus_cuniculus
ENSGAFG00000008421	snd1	100	94.292	ENSORLG00000015201	snd1	100	94.292	Oryzias_latipes
ENSGAFG00000008421	snd1	100	94.512	ENSORLG00020013991	snd1	100	94.512	Oryzias_latipes_hni
ENSGAFG00000008421	snd1	100	94.512	ENSORLG00015012436	snd1	100	94.512	Oryzias_latipes_hsok
ENSGAFG00000008421	snd1	100	94.621	ENSOMEG00000006406	snd1	100	94.621	Oryzias_melastigma
ENSGAFG00000008421	snd1	99	85.039	ENSOGAG00000013356	SND1	94	84.136	Otolemur_garnettii
ENSGAFG00000008421	snd1	99	82.864	ENSOARG00000002149	SND1	100	82.976	Ovis_aries
ENSGAFG00000008421	snd1	99	85.214	ENSPPAG00000042947	SND1	99	85.214	Pan_paniscus
ENSGAFG00000008421	snd1	100	84.320	ENSPPRG00000004494	SND1	100	84.320	Panthera_pardus
ENSGAFG00000008421	snd1	100	84.211	ENSPTIG00000014214	SND1	100	84.211	Panthera_tigris_altaica
ENSGAFG00000008421	snd1	99	85.214	ENSPTRG00000023911	SND1	99	85.214	Pan_troglodytes
ENSGAFG00000008421	snd1	99	85.327	ENSPANG00000011997	SND1	99	85.327	Papio_anubis
ENSGAFG00000008421	snd1	99	86.913	ENSPKIG00000023494	snd1	99	86.150	Paramormyrops_kingsleyae
ENSGAFG00000008421	snd1	94	94.498	ENSPMGG00000003629	snd1	100	94.498	Periophthalmus_magnuspinnatus
ENSGAFG00000008421	snd1	99	84.893	ENSPEMG00000010240	Snd1	100	83.991	Peromyscus_maniculatus_bairdii
ENSGAFG00000008421	snd1	99	74.266	ENSPMAG00000007915	-	99	74.153	Petromyzon_marinus
ENSGAFG00000008421	snd1	99	84.983	ENSPCIG00000011561	SND1	100	84.101	Phascolarctos_cinereus
ENSGAFG00000008421	snd1	100	98.683	ENSPFOG00000001557	snd1	100	98.683	Poecilia_formosa
ENSGAFG00000008421	snd1	100	98.683	ENSPLAG00000018459	snd1	97	98.683	Poecilia_latipinna
ENSGAFG00000008421	snd1	100	98.902	ENSPMEG00000006803	snd1	100	98.902	Poecilia_mexicana
ENSGAFG00000008421	snd1	100	98.683	ENSPREG00000002189	snd1	100	98.683	Poecilia_reticulata
ENSGAFG00000008421	snd1	92	88.889	ENSPPYG00000017972	SND1	100	88.889	Pongo_abelii
ENSGAFG00000008421	snd1	99	74.972	ENSPCAG00000011305	SND1	100	74.232	Procavia_capensis
ENSGAFG00000008421	snd1	100	85.152	ENSPCOG00000026791	SND1	100	85.344	Propithecus_coquereli
ENSGAFG00000008421	snd1	99	82.981	ENSPVAG00000013945	SND1	100	82.127	Pteropus_vampyrus
ENSGAFG00000008421	snd1	100	94.621	ENSPNYG00000000932	snd1	100	94.621	Pundamilia_nyererei
ENSGAFG00000008421	snd1	99	91.226	ENSPNAG00000001206	snd1	99	90.769	Pygocentrus_nattereri
ENSGAFG00000008421	snd1	99	84.555	ENSRNOG00000031173	Snd1	100	83.766	Rattus_norvegicus
ENSGAFG00000008421	snd1	72	88.577	ENSRBIG00000027782	-	93	88.636	Rhinopithecus_bieti
ENSGAFG00000008421	snd1	99	85.327	ENSRROG00000033020	SND1	100	84.320	Rhinopithecus_roxellana
ENSGAFG00000008421	snd1	99	85.102	ENSSBOG00000032461	SND1	99	85.102	Saimiri_boliviensis_boliviensis
ENSGAFG00000008421	snd1	99	81.941	ENSSHAG00000015359	SND1	100	81.573	Sarcophilus_harrisii
ENSGAFG00000008421	snd1	99	88.702	ENSSFOG00015001103	snd1	99	87.800	Scleropages_formosus
ENSGAFG00000008421	snd1	100	94.512	ENSSMAG00000001932	snd1	95	94.512	Scophthalmus_maximus
ENSGAFG00000008421	snd1	100	96.048	ENSSDUG00000002699	snd1	94	96.048	Seriola_dumerili
ENSGAFG00000008421	snd1	100	88.364	ENSSLDG00000001950	snd1	100	88.364	Seriola_lalandi_dorsalis
ENSGAFG00000008421	snd1	88	80.854	ENSSARG00000004877	SND1	92	80.854	Sorex_araneus
ENSGAFG00000008421	snd1	72	81.282	ENSSPUG00000017586	SND1	97	80.442	Sphenodon_punctatus
ENSGAFG00000008421	snd1	73	95.262	ENSSPAG00000021398	snd1	99	95.262	Stegastes_partitus
ENSGAFG00000008421	snd1	99	84.893	ENSSSCG00000016590	SND1	100	83.991	Sus_scrofa
ENSGAFG00000008421	snd1	100	93.960	ENSTRUG00000014067	snd1	100	92.645	Takifugu_rubripes
ENSGAFG00000008421	snd1	100	92.975	ENSTNIG00000011019	snd1	100	92.975	Tetraodon_nigroviridis
ENSGAFG00000008421	snd1	96	79.529	ENSTBEG00000003999	SND1	100	79.529	Tupaia_belangeri
ENSGAFG00000008421	snd1	99	80.756	ENSTTRG00000006059	SND1	100	79.934	Tursiops_truncatus
ENSGAFG00000008421	snd1	89	84.030	ENSUAMG00000005604	-	93	84.030	Ursus_americanus
ENSGAFG00000008421	snd1	68	79.050	ENSUAMG00000002820	-	89	77.546	Ursus_americanus
ENSGAFG00000008421	snd1	100	84.211	ENSUMAG00000005960	SND1	100	84.211	Ursus_maritimus
ENSGAFG00000008421	snd1	79	88.889	ENSVPAG00000008302	SND1	74	88.889	Vicugna_pacos
ENSGAFG00000008421	snd1	100	84.320	ENSVVUG00000007226	SND1	100	84.320	Vulpes_vulpes
ENSGAFG00000008421	snd1	99	80.158	ENSXETG00000023043	snd1	100	80.023	Xenopus_tropicalis
ENSGAFG00000008421	snd1	95	95.962	ENSXCOG00000013629	snd1	99	95.962	Xiphophorus_couchianus
ENSGAFG00000008421	snd1	100	99.232	ENSXMAG00000011469	snd1	100	99.232	Xiphophorus_maculatus