EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000008654 (Gene tree)
Gene ID: -
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein a
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 4552 bases
Position: chrNHOQ01001318.1:3075925-3080476
Accession: ZDB-GENE-050417-329
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000012798	RRM_1	PF00076.22	9.1e-26	1	1
ENSGAFP00000012792	RRM_1	PF00076.22	9.5e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000012933	-	1594	-	ENSGAFP00000012798	185 (aa)	-	-
ENSGAFT00000012927	-	3583	-	ENSGAFP00000012792	188 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000008654's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000008654's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000008654	cirbpa	57	34.286	ENSGAFG00000010213	ncbp2	59	37.500
ENSGAFG00000008654	cirbpa	65	45.833	ENSGAFG00000019917	rbmx	72	53.846
ENSGAFG00000008654	cirbpa	51	33.684	ENSGAFG00000019301	-	50	35.227

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000008654	cirbpa	72	84.211	ENSAPOG00000004458	cirbpa	72	83.582	Acanthochromis_polyacanthus
ENSGAFG00000008654	cirbpa	100	75.936	ENSACIG00000016116	cirbpa	99	76.882	Amphilophus_citrinellus
ENSGAFG00000008654	cirbpa	100	76.471	ENSAOCG00000016212	cirbpa	99	72.917	Amphiprion_ocellaris
ENSGAFG00000008654	cirbpa	100	74.468	ENSAPEG00000011989	cirbpa	100	72.539	Amphiprion_percula
ENSGAFG00000008654	cirbpa	100	80.541	ENSATEG00000014985	cirbpa	100	74.595	Anabas_testudineus
ENSGAFG00000008654	cirbpa	98	82.514	ENSACLG00000002094	-	100	76.471	Astatotilapia_calliptera
ENSGAFG00000008654	cirbpa	100	55.288	ENSAMXG00000015612	cirbpb	84	59.804	Astyanax_mexicanus
ENSGAFG00000008654	cirbpa	100	65.641	ENSCSEG00000014344	cirbpa	100	70.256	Cynoglossus_semilaevis
ENSGAFG00000008654	cirbpa	100	86.022	ENSCVAG00000004853	cirbpa	100	86.022	Cyprinodon_variegatus
ENSGAFG00000008654	cirbpa	100	58.511	ENSDARG00000103672	cirbpa	100	57.216	Danio_rerio
ENSGAFG00000008654	cirbpa	99	77.957	ENSFHEG00000002580	cirbpa	100	82.258	Fundulus_heteroclitus
ENSGAFG00000008654	cirbpa	99	56.122	ENSGMOG00000007179	cirbpb	98	51.232	Gadus_morhua
ENSGAFG00000008654	cirbpa	98	63.587	ENSGACG00000014978	-	100	62.162	Gasterosteus_aculeatus
ENSGAFG00000008654	cirbpa	100	70.681	ENSGACG00000015206	cirbpa	100	71.053	Gasterosteus_aculeatus
ENSGAFG00000008654	cirbpa	100	82.888	ENSHBUG00000022060	cirbpa	100	77.005	Haplochromis_burtoni
ENSGAFG00000008654	cirbpa	100	70.103	ENSKMAG00000005905	cirbpa	100	71.892	Kryptolebias_marmoratus
ENSGAFG00000008654	cirbpa	100	65.405	ENSLBEG00000000292	cirbpa	100	63.978	Labrus_bergylta
ENSGAFG00000008654	cirbpa	100	78.919	ENSMAMG00000010168	cirbpa	100	75.676	Mastacembelus_armatus
ENSGAFG00000008654	cirbpa	100	82.888	ENSMZEG00005025577	-	100	77.005	Maylandia_zebra
ENSGAFG00000008654	cirbpa	100	77.838	ENSMALG00000020092	cirbpa	100	78.919	Monopterus_albus
ENSGAFG00000008654	cirbpa	100	82.888	ENSNBRG00000019658	cirbpa	100	77.005	Neolamprologus_brichardi
ENSGAFG00000008654	cirbpa	100	75.936	ENSONIG00000010169	cirbpa	99	76.344	Oreochromis_niloticus
ENSGAFG00000008654	cirbpa	100	80.000	ENSORLG00000015433	cirbpa	100	81.081	Oryzias_latipes
ENSGAFG00000008654	cirbpa	100	80.000	ENSORLG00020016909	cirbpa	100	81.081	Oryzias_latipes_hni
ENSGAFG00000008654	cirbpa	100	80.000	ENSORLG00015016636	cirbpa	100	81.081	Oryzias_latipes_hsok
ENSGAFG00000008654	cirbpa	100	80.000	ENSOMEG00000021469	cirbpa	73	78.919	Oryzias_melastigma
ENSGAFG00000008654	cirbpa	99	73.262	ENSPMGG00000017342	cirbpa	100	72.362	Periophthalmus_magnuspinnatus
ENSGAFG00000008654	cirbpa	100	89.840	ENSPFOG00000015653	cirbpa	100	96.216	Poecilia_formosa
ENSGAFG00000008654	cirbpa	99	90.270	ENSPLAG00000011125	cirbpa	100	96.257	Poecilia_latipinna
ENSGAFG00000008654	cirbpa	100	90.323	ENSPMEG00000013878	cirbpa	100	96.277	Poecilia_mexicana
ENSGAFG00000008654	cirbpa	100	97.872	ENSPREG00000018042	cirbpa	100	97.872	Poecilia_reticulata
ENSGAFG00000008654	cirbpa	100	82.888	ENSPNYG00000007198	-	100	77.005	Pundamilia_nyererei
ENSGAFG00000008654	cirbpa	100	57.561	ENSPNAG00000019997	cirbpb	100	58.824	Pygocentrus_nattereri
ENSGAFG00000008654	cirbpa	100	61.170	ENSSFOG00015005346	cirbpb	100	68.421	Scleropages_formosus
ENSGAFG00000008654	cirbpa	100	69.192	ENSSMAG00000002412	cirbpa	100	70.202	Scophthalmus_maximus
ENSGAFG00000008654	cirbpa	100	60.541	ENSSDUG00000016099	cirbpa	100	59.184	Seriola_dumerili
ENSGAFG00000008654	cirbpa	100	70.053	ENSSPAG00000023037	cirbpa	98	69.231	Stegastes_partitus
ENSGAFG00000008654	cirbpa	100	71.892	ENSTRUG00000010187	cirbpa	100	69.189	Takifugu_rubripes
ENSGAFG00000008654	cirbpa	100	71.351	ENSTNIG00000000450	cirbpa	100	70.811	Tetraodon_nigroviridis
ENSGAFG00000008654	cirbpa	99	98.925	ENSXCOG00000008262	cirbpa	100	98.925	Xiphophorus_couchianus
ENSGAFG00000008654	cirbpa	100	98.919	ENSXMAG00000019336	cirbpa	100	98.919	Xiphophorus_maculatus