EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000009059 (Gene tree)
Gene ID: -
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 4697 bases
Position: chrNHOQ01001181.1:127023-131719
Accession: ZDB-GENE-040809-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000013439	RRM_1	PF00076.22	5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000013577	-	2289	-	ENSGAFP00000013439	307 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000009059's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000009059's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000009059	rbm42	99	79.288	ENSAPOG00000015109	rbm42	76	77.885	Acanthochromis_polyacanthus
ENSGAFG00000009059	rbm42	98	78.827	ENSACIG00000010771	rbm42	64	81.679	Amphilophus_citrinellus
ENSGAFG00000009059	rbm42	99	80.583	ENSAOCG00000008873	rbm42	76	78.205	Amphiprion_ocellaris
ENSGAFG00000009059	rbm42	99	80.583	ENSAPEG00000012051	rbm42	75	78.526	Amphiprion_percula
ENSGAFG00000009059	rbm42	99	78.571	ENSATEG00000000536	rbm42	76	76.206	Anabas_testudineus
ENSGAFG00000009059	rbm42	99	80.906	ENSACLG00000004988	rbm42	76	81.290	Astatotilapia_calliptera
ENSGAFG00000009059	rbm42	100	70.938	ENSAMXG00000016545	rbm42	79	70.513	Astyanax_mexicanus
ENSGAFG00000009059	rbm42	99	76.923	ENSCSEG00000010248	rbm42	78	74.921	Cynoglossus_semilaevis
ENSGAFG00000009059	rbm42	99	86.408	ENSCVAG00000015589	rbm42	77	87.179	Cyprinodon_variegatus
ENSGAFG00000009059	rbm42	99	65.109	ENSDARG00000039910	rbm42	77	68.454	Danio_rerio
ENSGAFG00000009059	rbm42	100	68.421	ENSELUG00000022403	rbm42	76	68.421	Esox_lucius
ENSGAFG00000009059	rbm42	86	86.940	ENSFHEG00000006764	rbm42	89	88.722	Fundulus_heteroclitus
ENSGAFG00000009059	rbm42	98	71.753	ENSGMOG00000012660	rbm42	77	67.302	Gadus_morhua
ENSGAFG00000009059	rbm42	99	74.359	ENSGACG00000004170	rbm42	76	71.975	Gasterosteus_aculeatus
ENSGAFG00000009059	rbm42	99	80.906	ENSHBUG00000011141	rbm42	76	81.290	Haplochromis_burtoni
ENSGAFG00000009059	rbm42	100	77.419	ENSHCOG00000021214	rbm42	76	77.419	Hippocampus_comes
ENSGAFG00000009059	rbm42	100	65.465	ENSIPUG00000022365	rbm42	75	70.347	Ictalurus_punctatus
ENSGAFG00000009059	rbm42	88	80.000	ENSKMAG00000015287	rbm42	74	76.727	Kryptolebias_marmoratus
ENSGAFG00000009059	rbm42	100	77.143	ENSLBEG00000017547	rbm42	77	74.841	Labrus_bergylta
ENSGAFG00000009059	rbm42	100	77.143	ENSLBEG00000004578	-	87	74.841	Labrus_bergylta
ENSGAFG00000009059	rbm42	100	67.937	ENSLOCG00000003368	rbm42	74	66.877	Lepisosteus_oculatus
ENSGAFG00000009059	rbm42	99	80.386	ENSMAMG00000006708	rbm42	76	77.707	Mastacembelus_armatus
ENSGAFG00000009059	rbm42	99	80.906	ENSMZEG00005025234	rbm42	76	81.290	Maylandia_zebra
ENSGAFG00000009059	rbm42	99	79.618	ENSMALG00000015720	rbm42	83	77.492	Monopterus_albus
ENSGAFG00000009059	rbm42	99	81.731	ENSONIG00000008029	rbm42	76	78.730	Oreochromis_niloticus
ENSGAFG00000009059	rbm42	99	63.399	ENSORLG00020022507	rbm42	71	64.401	Oryzias_latipes_hni
ENSGAFG00000009059	rbm42	99	79.221	ENSORLG00015000659	rbm42	76	79.743	Oryzias_latipes_hsok
ENSGAFG00000009059	rbm42	83	79.608	ENSOMEG00000014332	rbm42	94	79.608	Oryzias_melastigma
ENSGAFG00000009059	rbm42	100	70.533	ENSPKIG00000015165	rbm42	76	70.533	Paramormyrops_kingsleyae
ENSGAFG00000009059	rbm42	74	71.552	ENSPMGG00000003569	rbm42	55	98.571	Periophthalmus_magnuspinnatus
ENSGAFG00000009059	rbm42	69	55.760	ENSPMAG00000008633	rbm42	67	54.264	Petromyzon_marinus
ENSGAFG00000009059	rbm42	100	98.046	ENSPFOG00000007701	rbm42	77	98.046	Poecilia_formosa
ENSGAFG00000009059	rbm42	100	97.720	ENSPLAG00000009405	rbm42	77	97.720	Poecilia_latipinna
ENSGAFG00000009059	rbm42	100	97.720	ENSPMEG00000010375	rbm42	77	97.720	Poecilia_mexicana
ENSGAFG00000009059	rbm42	100	98.371	ENSPREG00000018102	rbm42	80	96.393	Poecilia_reticulata
ENSGAFG00000009059	rbm42	99	80.519	ENSPNYG00000014460	rbm42	76	80.906	Pundamilia_nyererei
ENSGAFG00000009059	rbm42	100	66.967	ENSPNAG00000009961	rbm42	76	70.625	Pygocentrus_nattereri
ENSGAFG00000009059	rbm42	99	70.570	ENSSFOG00015019227	rbm42	76	69.592	Scleropages_formosus
ENSGAFG00000009059	rbm42	99	74.921	ENSSMAG00000011935	rbm42	76	72.414	Scophthalmus_maximus
ENSGAFG00000009059	rbm42	99	78.344	ENSSDUG00000004033	rbm42	76	77.564	Seriola_dumerili
ENSGAFG00000009059	rbm42	96	77.409	ENSSLDG00000009918	rbm42	79	74.834	Seriola_lalandi_dorsalis
ENSGAFG00000009059	rbm42	99	79.935	ENSSPAG00000019871	rbm42	76	78.526	Stegastes_partitus
ENSGAFG00000009059	rbm42	100	72.843	ENSTRUG00000024586	-	59	71.246	Takifugu_rubripes
ENSGAFG00000009059	rbm42	99	62.918	ENSTNIG00000011669	rbm42	74	64.955	Tetraodon_nigroviridis
ENSGAFG00000009059	rbm42	99	58.621	ENSXETG00000017599	rbm42	76	58.438	Xenopus_tropicalis
ENSGAFG00000009059	rbm42	100	98.697	ENSXMAG00000012827	rbm42	80	96.721	Xiphophorus_maculatus