EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000009111 (Gene tree)
Gene ID: -
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a%2C subunit 1
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 6885 bases
Position: chrNHOQ01002094.1:1329209-1336093
Accession: ZDB-GENE-030616-156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000013509	PRP21_like_P	PF12230.8	1.8e-52	1	1
ENSGAFP00000013509	Surp	PF01805.20	6.9e-46	1	2
ENSGAFP00000013509	Surp	PF01805.20	6.9e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000013647	-	3128	-	ENSGAFP00000013509	784 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000009111's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000009111's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000009111	sf3a1	97	84.967	ENSG00000099995	SF3A1	100	83.270	Homo_sapiens
ENSGAFG00000009111	sf3a1	100	94.663	ENSAPOG00000020465	sf3a1	100	94.663	Acanthochromis_polyacanthus
ENSGAFG00000009111	sf3a1	97	84.837	ENSAMEG00000007737	SF3A1	100	82.936	Ailuropoda_melanoleuca
ENSGAFG00000009111	sf3a1	100	94.409	ENSACIG00000020672	sf3a1	100	94.409	Amphilophus_citrinellus
ENSGAFG00000009111	sf3a1	100	94.536	ENSAOCG00000003060	sf3a1	100	94.536	Amphiprion_ocellaris
ENSGAFG00000009111	sf3a1	100	94.663	ENSAPEG00000010735	sf3a1	100	94.663	Amphiprion_percula
ENSGAFG00000009111	sf3a1	97	93.987	ENSATEG00000021201	sf3a1	96	93.987	Anabas_testudineus
ENSGAFG00000009111	sf3a1	96	83.641	ENSAPLG00000009057	SF3A1	100	83.418	Anas_platyrhynchos
ENSGAFG00000009111	sf3a1	100	80.370	ENSACAG00000009415	SF3A1	100	80.123	Anolis_carolinensis
ENSGAFG00000009111	sf3a1	99	83.397	ENSANAG00000032045	SF3A1	100	82.772	Aotus_nancymaae
ENSGAFG00000009111	sf3a1	100	92.376	ENSACLG00000012622	sf3a1	100	93.266	Astatotilapia_calliptera
ENSGAFG00000009111	sf3a1	99	86.896	ENSAMXG00000005382	sf3a1	99	87.405	Astyanax_mexicanus
ENSGAFG00000009111	sf3a1	97	84.837	ENSBTAG00000003390	SF3A1	100	83.145	Bos_taurus
ENSGAFG00000009111	sf3a1	82	44.508	WBGene00004188	prp-21	90	43.962	Caenorhabditis_elegans
ENSGAFG00000009111	sf3a1	99	83.269	ENSCJAG00000010370	SF3A1	100	83.019	Callithrix_jacchus
ENSGAFG00000009111	sf3a1	97	84.837	ENSCAFG00000012559	SF3A1	100	83.145	Canis_familiaris
ENSGAFG00000009111	sf3a1	97	84.837	ENSCAFG00020000838	SF3A1	100	83.145	Canis_lupus_dingo
ENSGAFG00000009111	sf3a1	97	84.967	ENSCHIG00000018642	SF3A1	100	83.270	Capra_hircus
ENSGAFG00000009111	sf3a1	97	84.967	ENSTSYG00000004739	SF3A1	100	83.270	Carlito_syrichta
ENSGAFG00000009111	sf3a1	94	67.968	ENSCAPG00000015414	SF3A1	97	68.456	Cavia_aperea
ENSGAFG00000009111	sf3a1	99	83.333	ENSCPOG00000014589	SF3A1	100	83.019	Cavia_porcellus
ENSGAFG00000009111	sf3a1	99	83.397	ENSCCAG00000032006	SF3A1	100	82.772	Cebus_capucinus
ENSGAFG00000009111	sf3a1	97	84.967	ENSCATG00000029241	SF3A1	100	83.270	Cercocebus_atys
ENSGAFG00000009111	sf3a1	97	84.706	ENSCLAG00000006508	SF3A1	100	83.459	Chinchilla_lanigera
ENSGAFG00000009111	sf3a1	99	83.525	ENSCSAG00000009470	SF3A1	100	83.270	Chlorocebus_sabaeus
ENSGAFG00000009111	sf3a1	58	90.000	ENSCHOG00000005201	SF3A1	65	90.000	Choloepus_hoffmanni
ENSGAFG00000009111	sf3a1	100	80.682	ENSCPBG00000007595	SF3A1	100	81.967	Chrysemys_picta_bellii
ENSGAFG00000009111	sf3a1	97	52.746	ENSCING00000008526	-	97	52.113	Ciona_intestinalis
ENSGAFG00000009111	sf3a1	93	63.248	ENSCSAVG00000005608	-	100	51.026	Ciona_savignyi
ENSGAFG00000009111	sf3a1	99	83.525	ENSCANG00000033564	SF3A1	100	83.270	Colobus_angolensis_palliatus
ENSGAFG00000009111	sf3a1	97	84.605	ENSCGRG00001008933	Sf3a1	100	82.893	Cricetulus_griseus_chok1gshd
ENSGAFG00000009111	sf3a1	97	84.605	ENSCGRG00000006127	Sf3a1	100	82.893	Cricetulus_griseus_crigri
ENSGAFG00000009111	sf3a1	100	89.721	ENSCSEG00000010792	sf3a1	100	89.721	Cynoglossus_semilaevis
ENSGAFG00000009111	sf3a1	100	95.281	ENSCVAG00000004560	sf3a1	100	95.281	Cyprinodon_variegatus
ENSGAFG00000009111	sf3a1	100	85.678	ENSDARG00000041887	sf3a1	100	89.266	Danio_rerio
ENSGAFG00000009111	sf3a1	97	85.117	ENSDNOG00000010629	SF3A1	99	83.376	Dasypus_novemcinctus
ENSGAFG00000009111	sf3a1	97	84.837	ENSDORG00000005613	Sf3a1	100	83.145	Dipodomys_ordii
ENSGAFG00000009111	sf3a1	86	60.474	FBgn0266917	Sf3a1	84	57.810	Drosophila_melanogaster
ENSGAFG00000009111	sf3a1	85	82.609	ENSETEG00000017194	SF3A1	95	83.408	Echinops_telfairi
ENSGAFG00000009111	sf3a1	97	67.166	ENSEBUG00000001285	sf3a1	95	68.758	Eptatretus_burgeri
ENSGAFG00000009111	sf3a1	97	84.367	ENSEASG00005010254	SF3A1	100	83.709	Equus_asinus_asinus
ENSGAFG00000009111	sf3a1	97	84.367	ENSECAG00000023962	SF3A1	100	83.709	Equus_caballus
ENSGAFG00000009111	sf3a1	74	90.164	ENSEEUG00000003159	SF3A1	83	90.164	Erinaceus_europaeus
ENSGAFG00000009111	sf3a1	100	86.565	ENSELUG00000022578	sf3a1	100	87.452	Esox_lucius
ENSGAFG00000009111	sf3a1	97	84.575	ENSFCAG00000011932	SF3A1	100	82.893	Felis_catus
ENSGAFG00000009111	sf3a1	96	82.143	ENSFALG00000006944	SF3A1	100	82.116	Ficedula_albicollis
ENSGAFG00000009111	sf3a1	97	84.706	ENSFDAG00000009560	SF3A1	100	83.019	Fukomys_damarensis
ENSGAFG00000009111	sf3a1	100	96.183	ENSFHEG00000010866	sf3a1	100	96.183	Fundulus_heteroclitus
ENSGAFG00000009111	sf3a1	100	86.752	ENSGMOG00000016024	sf3a1	100	85.372	Gadus_morhua
ENSGAFG00000009111	sf3a1	96	83.752	ENSGALG00000007937	SF3A1	100	82.746	Gallus_gallus
ENSGAFG00000009111	sf3a1	100	88.987	ENSGACG00000011893	sf3a1	100	88.481	Gasterosteus_aculeatus
ENSGAFG00000009111	sf3a1	96	80.369	ENSGAGG00000000762	SF3A1	99	81.447	Gopherus_agassizii
ENSGAFG00000009111	sf3a1	97	84.967	ENSGGOG00000012631	SF3A1	100	83.270	Gorilla_gorilla
ENSGAFG00000009111	sf3a1	100	93.774	ENSHBUG00000015795	sf3a1	100	93.393	Haplochromis_burtoni
ENSGAFG00000009111	sf3a1	99	83.333	ENSHGLG00000007907	SF3A1	100	83.019	Heterocephalus_glaber_female
ENSGAFG00000009111	sf3a1	99	83.333	ENSHGLG00100013799	SF3A1	100	83.019	Heterocephalus_glaber_male
ENSGAFG00000009111	sf3a1	100	89.059	ENSHCOG00000015423	sf3a1	100	88.804	Hippocampus_comes
ENSGAFG00000009111	sf3a1	98	84.755	ENSIPUG00000002470	sf3a1	99	85.530	Ictalurus_punctatus
ENSGAFG00000009111	sf3a1	97	84.706	ENSSTOG00000013892	SF3A1	100	83.522	Ictidomys_tridecemlineatus
ENSGAFG00000009111	sf3a1	97	84.706	ENSJJAG00000022566	Sf3a1	100	83.291	Jaculus_jaculus
ENSGAFG00000009111	sf3a1	100	93.266	ENSKMAG00000002400	sf3a1	100	93.266	Kryptolebias_marmoratus
ENSGAFG00000009111	sf3a1	100	91.975	ENSLBEG00000022974	sf3a1	100	91.592	Labrus_bergylta
ENSGAFG00000009111	sf3a1	100	82.868	ENSLACG00000003565	SF3A1	100	83.165	Latimeria_chalumnae
ENSGAFG00000009111	sf3a1	100	86.346	ENSLOCG00000008251	sf3a1	99	87.105	Lepisosteus_oculatus
ENSGAFG00000009111	sf3a1	97	85.098	ENSLAFG00000000448	SF3A1	100	83.396	Loxodonta_africana
ENSGAFG00000009111	sf3a1	97	55.065	ENSLAFG00000026032	-	97	54.026	Loxodonta_africana
ENSGAFG00000009111	sf3a1	99	83.397	ENSMFAG00000031979	SF3A1	100	83.145	Macaca_fascicularis
ENSGAFG00000009111	sf3a1	99	83.397	ENSMMUG00000005547	SF3A1	100	83.145	Macaca_mulatta
ENSGAFG00000009111	sf3a1	99	83.525	ENSMNEG00000037229	SF3A1	100	83.270	Macaca_nemestrina
ENSGAFG00000009111	sf3a1	99	83.525	ENSMLEG00000041908	SF3A1	100	83.270	Mandrillus_leucophaeus
ENSGAFG00000009111	sf3a1	98	93.264	ENSMAMG00000006460	sf3a1	97	93.264	Mastacembelus_armatus
ENSGAFG00000009111	sf3a1	100	92.376	ENSMZEG00005009633	sf3a1	100	93.266	Maylandia_zebra
ENSGAFG00000009111	sf3a1	96	83.752	ENSMGAG00000001330	SF3A1	99	84.176	Meleagris_gallopavo
ENSGAFG00000009111	sf3a1	93	80.518	ENSMAUG00000020317	Sf3a1	100	77.652	Mesocricetus_auratus
ENSGAFG00000009111	sf3a1	97	84.967	ENSMICG00000010038	SF3A1	100	83.270	Microcebus_murinus
ENSGAFG00000009111	sf3a1	97	84.444	ENSMOCG00000008438	Sf3a1	100	83.396	Microtus_ochrogaster
ENSGAFG00000009111	sf3a1	100	88.917	ENSMMOG00000015588	sf3a1	99	89.682	Mola_mola
ENSGAFG00000009111	sf3a1	98	83.009	ENSMODG00000009270	SF3A1	100	82.872	Monodelphis_domestica
ENSGAFG00000009111	sf3a1	100	92.513	ENSMALG00000000148	sf3a1	100	92.893	Monopterus_albus
ENSGAFG00000009111	sf3a1	97	84.605	MGP_CAROLIEiJ_G0016029	Sf3a1	99	83.207	Mus_caroli
ENSGAFG00000009111	sf3a1	97	84.605	ENSMUSG00000002129	Sf3a1	99	83.207	Mus_musculus
ENSGAFG00000009111	sf3a1	97	84.474	MGP_PahariEiJ_G0016862	Sf3a1	99	83.207	Mus_pahari
ENSGAFG00000009111	sf3a1	97	84.605	MGP_SPRETEiJ_G0016870	Sf3a1	99	83.207	Mus_spretus
ENSGAFG00000009111	sf3a1	97	84.575	ENSMPUG00000013144	SF3A1	100	83.270	Mustela_putorius_furo
ENSGAFG00000009111	sf3a1	99	83.312	ENSMLUG00000002139	SF3A1	100	83.019	Myotis_lucifugus
ENSGAFG00000009111	sf3a1	97	84.706	ENSNGAG00000016977	Sf3a1	100	83.459	Nannospalax_galili
ENSGAFG00000009111	sf3a1	100	93.274	ENSNBRG00000016642	sf3a1	100	92.893	Neolamprologus_brichardi
ENSGAFG00000009111	sf3a1	99	83.525	ENSNLEG00000003686	SF3A1	100	83.270	Nomascus_leucogenys
ENSGAFG00000009111	sf3a1	94	75.068	ENSMEUG00000008741	SF3A1	100	74.770	Notamacropus_eugenii
ENSGAFG00000009111	sf3a1	97	85.359	ENSOPRG00000016636	SF3A1	100	83.396	Ochotona_princeps
ENSGAFG00000009111	sf3a1	97	84.706	ENSODEG00000002571	SF3A1	100	83.501	Octodon_degus
ENSGAFG00000009111	sf3a1	100	94.028	ENSONIG00000010848	sf3a1	100	93.647	Oreochromis_niloticus
ENSGAFG00000009111	sf3a1	97	84.837	ENSOCUG00000007633	SF3A1	100	83.145	Oryctolagus_cuniculus
ENSGAFG00000009111	sf3a1	96	93.501	ENSORLG00000013050	sf3a1	99	93.236	Oryzias_latipes
ENSGAFG00000009111	sf3a1	99	90.793	ENSORLG00020003236	sf3a1	97	91.108	Oryzias_latipes_hni
ENSGAFG00000009111	sf3a1	100	93.139	ENSORLG00015017411	sf3a1	100	92.884	Oryzias_latipes_hsok
ENSGAFG00000009111	sf3a1	100	93.774	ENSOMEG00000013362	sf3a1	100	93.520	Oryzias_melastigma
ENSGAFG00000009111	sf3a1	97	84.967	ENSOGAG00000012931	SF3A1	100	83.270	Otolemur_garnettii
ENSGAFG00000009111	sf3a1	97	83.529	ENSOARG00000006849	SF3A1	100	81.887	Ovis_aries
ENSGAFG00000009111	sf3a1	97	84.183	ENSPPAG00000041790	SF3A1	100	82.390	Pan_paniscus
ENSGAFG00000009111	sf3a1	97	84.575	ENSPPRG00000004391	SF3A1	100	82.893	Panthera_pardus
ENSGAFG00000009111	sf3a1	97	84.444	ENSPTIG00000000844	SF3A1	99	84.967	Panthera_tigris_altaica
ENSGAFG00000009111	sf3a1	97	84.967	ENSPTRG00000014240	SF3A1	100	83.270	Pan_troglodytes
ENSGAFG00000009111	sf3a1	99	83.525	ENSPANG00000020772	SF3A1	100	83.270	Papio_anubis
ENSGAFG00000009111	sf3a1	82	90.110	ENSPSIG00000012803	SF3A1	99	90.110	Pelodiscus_sinensis
ENSGAFG00000009111	sf3a1	97	89.908	ENSPMGG00000023096	sf3a1	100	90.957	Periophthalmus_magnuspinnatus
ENSGAFG00000009111	sf3a1	97	84.737	ENSPEMG00000009494	Sf3a1	100	83.396	Peromyscus_maniculatus_bairdii
ENSGAFG00000009111	sf3a1	69	77.737	ENSPMAG00000007139	-	93	77.818	Petromyzon_marinus
ENSGAFG00000009111	sf3a1	97	84.314	ENSPCIG00000022692	SF3A1	100	82.872	Phascolarctos_cinereus
ENSGAFG00000009111	sf3a1	100	87.405	ENSPFOG00000016768	sf3a1	100	87.437	Poecilia_formosa
ENSGAFG00000009111	sf3a1	100	98.473	ENSPLAG00000017268	sf3a1	100	98.473	Poecilia_latipinna
ENSGAFG00000009111	sf3a1	96	98.485	ENSPMEG00000019811	sf3a1	100	98.485	Poecilia_mexicana
ENSGAFG00000009111	sf3a1	100	98.601	ENSPREG00000010347	sf3a1	100	98.601	Poecilia_reticulata
ENSGAFG00000009111	sf3a1	99	83.525	ENSPPYG00000011707	SF3A1	100	83.270	Pongo_abelii
ENSGAFG00000009111	sf3a1	58	83.471	ENSPCAG00000003266	SF3A1	57	83.471	Procavia_capensis
ENSGAFG00000009111	sf3a1	97	84.706	ENSPCOG00000026630	SF3A1	100	83.019	Propithecus_coquereli
ENSGAFG00000009111	sf3a1	95	84.203	ENSPVAG00000017719	SF3A1	94	84.739	Pteropus_vampyrus
ENSGAFG00000009111	sf3a1	100	93.647	ENSPNYG00000018706	sf3a1	100	93.266	Pundamilia_nyererei
ENSGAFG00000009111	sf3a1	99	87.023	ENSPNAG00000003721	sf3a1	99	86.768	Pygocentrus_nattereri
ENSGAFG00000009111	sf3a1	98	83.312	ENSRNOG00000005218	Sf3a1	99	82.973	Rattus_norvegicus
ENSGAFG00000009111	sf3a1	99	83.397	ENSRBIG00000032167	SF3A1	100	83.145	Rhinopithecus_bieti
ENSGAFG00000009111	sf3a1	99	83.397	ENSRROG00000044908	SF3A1	100	83.145	Rhinopithecus_roxellana
ENSGAFG00000009111	sf3a1	93	84.762	ENSSBOG00000021960	SF3A1	98	85.180	Saimiri_boliviensis_boliviensis
ENSGAFG00000009111	sf3a1	97	80.523	ENSSHAG00000003666	SF3A1	97	82.092	Sarcophilus_harrisii
ENSGAFG00000009111	sf3a1	100	89.001	ENSSFOG00015004579	sf3a1	100	90.139	Scleropages_formosus
ENSGAFG00000009111	sf3a1	100	89.809	ENSSMAG00000004275	sf3a1	100	89.554	Scophthalmus_maximus
ENSGAFG00000009111	sf3a1	100	93.011	ENSSDUG00000022219	sf3a1	100	92.757	Seriola_dumerili
ENSGAFG00000009111	sf3a1	100	93.011	ENSSLDG00000012642	sf3a1	100	92.757	Seriola_lalandi_dorsalis
ENSGAFG00000009111	sf3a1	97	81.699	ENSSARG00000005960	SF3A1	99	82.222	Sorex_araneus
ENSGAFG00000009111	sf3a1	96	82.835	ENSSPUG00000018863	SF3A1	100	82.836	Sphenodon_punctatus
ENSGAFG00000009111	sf3a1	100	93.774	ENSSPAG00000011856	sf3a1	100	93.393	Stegastes_partitus
ENSGAFG00000009111	sf3a1	97	84.575	ENSSSCG00000010002	SF3A1	100	83.145	Sus_scrofa
ENSGAFG00000009111	sf3a1	96	83.531	ENSTGUG00000010547	SF3A1	99	84.416	Taeniopygia_guttata
ENSGAFG00000009111	sf3a1	100	89.172	ENSTRUG00000006118	sf3a1	100	89.172	Takifugu_rubripes
ENSGAFG00000009111	sf3a1	64	86.617	ENSTNIG00000005713	sf3a1	89	88.496	Tetraodon_nigroviridis
ENSGAFG00000009111	sf3a1	99	76.893	ENSTBEG00000012771	SF3A1	100	76.730	Tupaia_belangeri
ENSGAFG00000009111	sf3a1	97	84.334	ENSTTRG00000001535	SF3A1	100	83.040	Tursiops_truncatus
ENSGAFG00000009111	sf3a1	99	81.622	ENSUAMG00000006750	SF3A1	98	82.458	Ursus_americanus
ENSGAFG00000009111	sf3a1	100	82.456	ENSUMAG00000016665	SF3A1	99	83.694	Ursus_maritimus
ENSGAFG00000009111	sf3a1	97	84.837	ENSVVUG00000003075	SF3A1	100	83.145	Vulpes_vulpes
ENSGAFG00000009111	sf3a1	100	77.261	ENSXETG00000016144	sf3a1	96	83.871	Xenopus_tropicalis
ENSGAFG00000009111	sf3a1	100	98.342	ENSXCOG00000015653	sf3a1	100	98.342	Xiphophorus_couchianus
ENSGAFG00000009111	sf3a1	100	98.597	ENSXMAG00000002753	sf3a1	100	98.597	Xiphophorus_maculatus