EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000009193 (Gene tree)
Gene ID: -
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine (psi) synthase family member 1
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 4058 bases
Position: chrNHOQ01002872.1:555457-559514
Accession: ZDB-GENE-080723-73
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000013629	TruB_N	PF01509.18	5.9e-42	1	1
ENSGAFP00000013631	TruB_N	PF01509.18	2.1e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000013769	-	858	-	ENSGAFP00000013629	285 (aa)	-	-
ENSGAFT00000013771	-	762	-	ENSGAFP00000013631	253 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000009193's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000009193's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000009193	trub1	68	31.461	ENSGAFG00000010107	trub2	56	31.217

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000009193	trub1	86	64.344	ENSG00000165832	TRUB1	70	64.344	Homo_sapiens
ENSGAFG00000009193	trub1	89	80.469	ENSAPOG00000020565	trub1	93	82.422	Acanthochromis_polyacanthus
ENSGAFG00000009193	trub1	86	64.228	ENSAMEG00000014931	TRUB1	68	65.145	Ailuropoda_melanoleuca
ENSGAFG00000009193	trub1	94	77.733	ENSACIG00000003060	trub1	92	77.733	Amphilophus_citrinellus
ENSGAFG00000009193	trub1	89	80.078	ENSAOCG00000017188	trub1	93	82.031	Amphiprion_ocellaris
ENSGAFG00000009193	trub1	89	80.859	ENSAPEG00000015209	trub1	93	82.031	Amphiprion_percula
ENSGAFG00000009193	trub1	86	83.740	ENSATEG00000023291	trub1	88	83.740	Anabas_testudineus
ENSGAFG00000009193	trub1	84	66.807	ENSAPLG00000006808	TRUB1	85	66.807	Anas_platyrhynchos
ENSGAFG00000009193	trub1	86	62.857	ENSACAG00000009282	TRUB1	88	62.857	Anolis_carolinensis
ENSGAFG00000009193	trub1	86	64.344	ENSANAG00000022870	TRUB1	69	64.344	Aotus_nancymaae
ENSGAFG00000009193	trub1	89	82.031	ENSACLG00000000823	trub1	92	83.203	Astatotilapia_calliptera
ENSGAFG00000009193	trub1	85	75.934	ENSAMXG00000015845	trub1	80	75.934	Astyanax_mexicanus
ENSGAFG00000009193	trub1	86	64.898	ENSBTAG00000012955	TRUB1	69	64.898	Bos_taurus
ENSGAFG00000009193	trub1	86	64.344	ENSCJAG00000047815	TRUB1	69	64.344	Callithrix_jacchus
ENSGAFG00000009193	trub1	86	64.754	ENSCAFG00000011688	TRUB1	68	65.417	Canis_familiaris
ENSGAFG00000009193	trub1	86	64.754	ENSCAFG00020013237	TRUB1	68	65.417	Canis_lupus_dingo
ENSGAFG00000009193	trub1	86	64.898	ENSCHIG00000020884	TRUB1	73	64.898	Capra_hircus
ENSGAFG00000009193	trub1	86	63.115	ENSTSYG00000000446	TRUB1	68	63.750	Carlito_syrichta
ENSGAFG00000009193	trub1	72	57.767	ENSCAPG00000017088	TRUB1	79	57.767	Cavia_aperea
ENSGAFG00000009193	trub1	66	63.102	ENSCPOG00000030129	-	72	63.102	Cavia_porcellus
ENSGAFG00000009193	trub1	65	64.130	ENSCPOG00000040236	-	75	64.130	Cavia_porcellus
ENSGAFG00000009193	trub1	86	64.344	ENSCCAG00000028842	TRUB1	68	65.272	Cebus_capucinus
ENSGAFG00000009193	trub1	86	64.344	ENSCATG00000033431	TRUB1	69	64.344	Cercocebus_atys
ENSGAFG00000009193	trub1	65	63.043	ENSCLAG00000008664	TRUB1	75	63.043	Chinchilla_lanigera
ENSGAFG00000009193	trub1	86	64.344	ENSCSAG00000004891	TRUB1	69	64.344	Chlorocebus_sabaeus
ENSGAFG00000009193	trub1	84	58.159	ENSCHOG00000011931	TRUB1	69	58.159	Choloepus_hoffmanni
ENSGAFG00000009193	trub1	91	65.267	ENSCPBG00000003051	TRUB1	90	65.267	Chrysemys_picta_bellii
ENSGAFG00000009193	trub1	86	64.344	ENSCANG00000029445	TRUB1	68	65.272	Colobus_angolensis_palliatus
ENSGAFG00000009193	trub1	74	64.455	ENSCGRG00001016772	-	70	64.319	Cricetulus_griseus_chok1gshd
ENSGAFG00000009193	trub1	84	55.882	ENSCGRG00001010322	-	69	53.846	Cricetulus_griseus_chok1gshd
ENSGAFG00000009193	trub1	83	63.713	ENSCGRG00000010806	Trub1	74	63.525	Cricetulus_griseus_crigri
ENSGAFG00000009193	trub1	85	77.778	ENSCSEG00000011261	trub1	88	72.794	Cynoglossus_semilaevis
ENSGAFG00000009193	trub1	87	83.936	ENSCVAG00000008791	trub1	76	84.739	Cyprinodon_variegatus
ENSGAFG00000009193	trub1	86	71.837	ENSDARG00000053805	trub1	99	79.412	Danio_rerio
ENSGAFG00000009193	trub1	86	62.705	ENSDNOG00000001069	TRUB1	69	62.705	Dasypus_novemcinctus
ENSGAFG00000009193	trub1	81	64.655	ENSDORG00000010431	Trub1	69	64.435	Dipodomys_ordii
ENSGAFG00000009193	trub1	62	60.870	ENSETEG00000009183	TRUB1	50	62.319	Echinops_telfairi
ENSGAFG00000009193	trub1	86	63.934	ENSEASG00005014739	TRUB1	68	64.583	Equus_asinus_asinus
ENSGAFG00000009193	trub1	86	63.934	ENSECAG00000007177	TRUB1	68	64.583	Equus_caballus
ENSGAFG00000009193	trub1	88	56.175	ENSEEUG00000013993	TRUB1	71	56.471	Erinaceus_europaeus
ENSGAFG00000009193	trub1	85	79.752	ENSELUG00000000502	trub1	84	79.752	Esox_lucius
ENSGAFG00000009193	trub1	89	63.529	ENSFCAG00000031927	TRUB1	68	65.417	Felis_catus
ENSGAFG00000009193	trub1	75	65.888	ENSFALG00000002232	TRUB1	82	65.888	Ficedula_albicollis
ENSGAFG00000009193	trub1	65	64.674	ENSFDAG00000008140	TRUB1	82	60.891	Fukomys_damarensis
ENSGAFG00000009193	trub1	90	83.721	ENSFHEG00000004016	trub1	88	84.884	Fundulus_heteroclitus
ENSGAFG00000009193	trub1	86	63.821	ENSGALG00000009091	TRUB1	86	63.821	Gallus_gallus
ENSGAFG00000009193	trub1	66	85.542	ENSGACG00000015387	trub1	92	84.127	Gasterosteus_aculeatus
ENSGAFG00000009193	trub1	84	69.038	ENSGAGG00000009758	TRUB1	68	69.038	Gopherus_agassizii
ENSGAFG00000009193	trub1	86	64.344	ENSGGOG00000004583	TRUB1	68	65.272	Gorilla_gorilla
ENSGAFG00000009193	trub1	89	81.641	ENSHBUG00000016787	trub1	92	82.812	Haplochromis_burtoni
ENSGAFG00000009193	trub1	84	63.750	ENSHGLG00000015314	TRUB1	68	63.750	Heterocephalus_glaber_female
ENSGAFG00000009193	trub1	65	64.130	ENSHGLG00100009183	TRUB1	77	64.130	Heterocephalus_glaber_male
ENSGAFG00000009193	trub1	89	80.000	ENSHCOG00000017877	trub1	92	81.176	Hippocampus_comes
ENSGAFG00000009193	trub1	87	74.899	ENSIPUG00000017559	trub1	87	74.899	Ictalurus_punctatus
ENSGAFG00000009193	trub1	83	66.102	ENSSTOG00000003641	TRUB1	71	66.102	Ictidomys_tridecemlineatus
ENSGAFG00000009193	trub1	86	63.525	ENSJJAG00000011800	Trub1	71	63.525	Jaculus_jaculus
ENSGAFG00000009193	trub1	89	80.078	ENSKMAG00000006232	trub1	92	81.250	Kryptolebias_marmoratus
ENSGAFG00000009193	trub1	89	80.078	ENSLBEG00000026722	trub1	89	80.859	Labrus_bergylta
ENSGAFG00000009193	trub1	91	70.000	ENSLACG00000014885	TRUB1	86	70.000	Latimeria_chalumnae
ENSGAFG00000009193	trub1	89	73.622	ENSLOCG00000012979	trub1	86	73.622	Lepisosteus_oculatus
ENSGAFG00000009193	trub1	86	63.934	ENSLAFG00000015452	TRUB1	69	64.754	Loxodonta_africana
ENSGAFG00000009193	trub1	86	64.344	ENSMFAG00000031767	TRUB1	69	64.344	Macaca_fascicularis
ENSGAFG00000009193	trub1	86	64.344	ENSMMUG00000001902	TRUB1	69	64.344	Macaca_mulatta
ENSGAFG00000009193	trub1	86	61.475	ENSMNEG00000044646	TRUB1	69	61.475	Macaca_nemestrina
ENSGAFG00000009193	trub1	86	64.344	ENSMLEG00000042655	TRUB1	68	65.272	Mandrillus_leucophaeus
ENSGAFG00000009193	trub1	89	82.031	ENSMZEG00005024095	trub1	92	83.203	Maylandia_zebra
ENSGAFG00000009193	trub1	87	64.777	ENSMGAG00000011135	TRUB1	84	64.777	Meleagris_gallopavo
ENSGAFG00000009193	trub1	83	61.603	ENSMAUG00000011101	Trub1	77	58.712	Mesocricetus_auratus
ENSGAFG00000009193	trub1	86	63.934	ENSMICG00000016324	TRUB1	68	64.583	Microcebus_murinus
ENSGAFG00000009193	trub1	82	64.255	ENSMOCG00000017759	Trub1	73	64.050	Microtus_ochrogaster
ENSGAFG00000009193	trub1	86	65.164	ENSMODG00000009676	TRUB1	69	64.800	Monodelphis_domestica
ENSGAFG00000009193	trub1	85	65.145	MGP_CAROLIEiJ_G0023100	Trub1	76	65.426	Mus_caroli
ENSGAFG00000009193	trub1	85	64.315	ENSMUSG00000025086	Trub1	76	64.362	Mus_musculus
ENSGAFG00000009193	trub1	86	64.082	MGP_PahariEiJ_G0014588	Trub1	72	64.082	Mus_pahari
ENSGAFG00000009193	trub1	85	64.315	MGP_SPRETEiJ_G0024021	Trub1	76	64.362	Mus_spretus
ENSGAFG00000009193	trub1	86	64.754	ENSMPUG00000003556	TRUB1	68	65.417	Mustela_putorius_furo
ENSGAFG00000009193	trub1	86	63.934	ENSMLUG00000017686	TRUB1	70	64.583	Myotis_lucifugus
ENSGAFG00000009193	trub1	86	64.344	ENSNGAG00000018682	Trub1	68	65.272	Nannospalax_galili
ENSGAFG00000009193	trub1	85	83.128	ENSNBRG00000023393	trub1	86	84.362	Neolamprologus_brichardi
ENSGAFG00000009193	trub1	86	64.344	ENSNLEG00000016345	TRUB1	70	64.344	Nomascus_leucogenys
ENSGAFG00000009193	trub1	71	68.317	ENSMEUG00000006603	TRUB1	80	65.741	Notamacropus_eugenii
ENSGAFG00000009193	trub1	89	61.868	ENSOPRG00000009371	TRUB1	76	61.303	Ochotona_princeps
ENSGAFG00000009193	trub1	86	62.857	ENSODEG00000010854	TRUB1	70	62.857	Octodon_degus
ENSGAFG00000009193	trub1	89	81.176	ENSONIG00000007249	trub1	92	82.353	Oreochromis_niloticus
ENSGAFG00000009193	trub1	87	65.587	ENSOANG00000001556	TRUB1	87	63.019	Ornithorhynchus_anatinus
ENSGAFG00000009193	trub1	86	63.525	ENSOCUG00000009456	TRUB1	69	64.435	Oryctolagus_cuniculus
ENSGAFG00000009193	trub1	90	81.395	ENSORLG00000029719	trub1	92	82.171	Oryzias_latipes
ENSGAFG00000009193	trub1	90	81.008	ENSORLG00020016767	trub1	91	81.783	Oryzias_latipes_hni
ENSGAFG00000009193	trub1	90	80.233	ENSORLG00015014728	trub1	92	81.008	Oryzias_latipes_hsok
ENSGAFG00000009193	trub1	90	80.233	ENSOMEG00000014556	trub1	90	81.395	Oryzias_melastigma
ENSGAFG00000009193	trub1	86	64.344	ENSOGAG00000015895	TRUB1	68	65.272	Otolemur_garnettii
ENSGAFG00000009193	trub1	86	63.095	ENSOARG00000015591	TRUB1	77	60.294	Ovis_aries
ENSGAFG00000009193	trub1	86	64.344	ENSPPAG00000043645	TRUB1	68	65.272	Pan_paniscus
ENSGAFG00000009193	trub1	89	63.137	ENSPPRG00000007096	TRUB1	68	65.000	Panthera_pardus
ENSGAFG00000009193	trub1	89	63.137	ENSPTIG00000006378	TRUB1	68	65.000	Panthera_tigris_altaica
ENSGAFG00000009193	trub1	86	64.344	ENSPTRG00000002964	TRUB1	68	65.272	Pan_troglodytes
ENSGAFG00000009193	trub1	86	64.344	ENSPANG00000020712	TRUB1	69	64.344	Papio_anubis
ENSGAFG00000009193	trub1	64	78.528	ENSPKIG00000003852	trub1	70	78.528	Paramormyrops_kingsleyae
ENSGAFG00000009193	trub1	89	66.537	ENSPSIG00000012877	TRUB1	88	66.537	Pelodiscus_sinensis
ENSGAFG00000009193	trub1	89	74.902	ENSPMGG00000000075	trub1	90	76.078	Periophthalmus_magnuspinnatus
ENSGAFG00000009193	trub1	84	65.417	ENSPEMG00000011156	Trub1	70	65.417	Peromyscus_maniculatus_bairdii
ENSGAFG00000009193	trub1	86	65.574	ENSPCIG00000009729	TRUB1	70	63.566	Phascolarctos_cinereus
ENSGAFG00000009193	trub1	89	94.862	ENSPFOG00000009950	trub1	92	94.862	Poecilia_formosa
ENSGAFG00000009193	trub1	90	94.553	ENSPLAG00000013855	trub1	90	94.553	Poecilia_latipinna
ENSGAFG00000009193	trub1	90	94.942	ENSPMEG00000009064	trub1	92	94.942	Poecilia_mexicana
ENSGAFG00000009193	trub1	90	92.607	ENSPREG00000003343	trub1	92	92.607	Poecilia_reticulata
ENSGAFG00000009193	trub1	86	63.934	ENSPPYG00000002676	TRUB1	70	63.934	Pongo_abelii
ENSGAFG00000009193	trub1	86	57.787	ENSPCAG00000008427	TRUB1	69	58.607	Procavia_capensis
ENSGAFG00000009193	trub1	86	59.426	ENSPCOG00000024360	TRUB1	67	60.000	Propithecus_coquereli
ENSGAFG00000009193	trub1	74	66.038	ENSPVAG00000007575	TRUB1	81	65.888	Pteropus_vampyrus
ENSGAFG00000009193	trub1	89	82.031	ENSPNYG00000018614	trub1	92	83.203	Pundamilia_nyererei
ENSGAFG00000009193	trub1	86	73.853	ENSPNAG00000006881	trub1	80	73.853	Pygocentrus_nattereri
ENSGAFG00000009193	trub1	86	62.857	ENSRNOG00000017321	Trub1	79	59.779	Rattus_norvegicus
ENSGAFG00000009193	trub1	84	56.667	ENSRBIG00000033423	TRUB1	66	56.667	Rhinopithecus_bieti
ENSGAFG00000009193	trub1	86	64.344	ENSRROG00000033902	TRUB1	69	64.344	Rhinopithecus_roxellana
ENSGAFG00000009193	trub1	86	64.344	ENSSBOG00000024237	TRUB1	69	64.344	Saimiri_boliviensis_boliviensis
ENSGAFG00000009193	trub1	73	66.986	ENSSHAG00000009346	TRUB1	70	66.986	Sarcophilus_harrisii
ENSGAFG00000009193	trub1	89	74.609	ENSSFOG00015022124	trub1	87	75.000	Scleropages_formosus
ENSGAFG00000009193	trub1	89	81.250	ENSSMAG00000001020	trub1	91	82.422	Scophthalmus_maximus
ENSGAFG00000009193	trub1	89	80.078	ENSSDUG00000016414	trub1	92	83.984	Seriola_dumerili
ENSGAFG00000009193	trub1	89	80.078	ENSSLDG00000015486	trub1	92	83.984	Seriola_lalandi_dorsalis
ENSGAFG00000009193	trub1	91	64.122	ENSSPUG00000001642	TRUB1	90	64.122	Sphenodon_punctatus
ENSGAFG00000009193	trub1	89	80.859	ENSSPAG00000001217	trub1	92	82.031	Stegastes_partitus
ENSGAFG00000009193	trub1	84	65.272	ENSSSCG00000010653	TRUB1	69	65.272	Sus_scrofa
ENSGAFG00000009193	trub1	85	65.432	ENSTGUG00000010971	TRUB1	88	64.257	Taeniopygia_guttata
ENSGAFG00000009193	trub1	72	55.610	ENSTBEG00000002880	TRUB1	80	55.610	Tupaia_belangeri
ENSGAFG00000009193	trub1	71	66.502	ENSTTRG00000005767	TRUB1	77	66.502	Tursiops_truncatus
ENSGAFG00000009193	trub1	86	64.754	ENSUAMG00000024876	TRUB1	68	65.690	Ursus_americanus
ENSGAFG00000009193	trub1	86	64.898	ENSUMAG00000002411	TRUB1	76	64.141	Ursus_maritimus
ENSGAFG00000009193	trub1	86	64.754	ENSVPAG00000005507	TRUB1	68	65.417	Vicugna_pacos
ENSGAFG00000009193	trub1	86	64.754	ENSVVUG00000010085	TRUB1	58	65.417	Vulpes_vulpes
ENSGAFG00000009193	trub1	86	65.574	ENSXETG00000023828	trub1	88	65.574	Xenopus_tropicalis
ENSGAFG00000009193	trub1	98	93.571	ENSXCOG00000017847	trub1	99	93.571	Xiphophorus_couchianus
ENSGAFG00000009193	trub1	90	95.331	ENSXMAG00000014701	trub1	92	95.331	Xiphophorus_maculatus