EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000009398 (Gene tree)
Gene ID: -
Gene Symbol: zgc:171482
Alias: -
Full Name: zgc:171482
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 26345 bases
Position: chrNHOQ01001229.1:11501942-11528286
Accession: ZDB-GENE-080204-84
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000013904	zf-met	PF12874.7	2.1e-21	1	3
ENSGAFP00000013904	zf-met	PF12874.7	2.1e-21	2	3
ENSGAFP00000013904	zf-met	PF12874.7	2.1e-21	3	3
ENSGAFP00000013904	zf-C2H2_jaz	PF12171.8	2.9e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000014048	-	462	-	ENSGAFP00000013904	153 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000009398's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000009398's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000009398	zgc:171482	67	54.545	ENSGAFG00000007352	znf346	50	54.545
ENSGAFG00000009398	zgc:171482	95	60.265	ENSGAFG00000013149	zmat4a	97	74.545

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000009398	zgc:171482	99	77.019	ENSAPOG00000019970	zgc:171482	100	98.319	Acanthochromis_polyacanthus
ENSGAFG00000009398	zgc:171482	78	98.333	ENSACIG00000021512	zgc:171482	90	98.333	Amphilophus_citrinellus
ENSGAFG00000009398	zgc:171482	78	98.333	ENSAOCG00000000751	zgc:171482	88	98.333	Amphiprion_ocellaris
ENSGAFG00000009398	zgc:171482	78	98.333	ENSAPEG00000014154	zgc:171482	86	98.333	Amphiprion_percula
ENSGAFG00000009398	zgc:171482	100	98.261	ENSATEG00000001371	zgc:171482	100	96.667	Anabas_testudineus
ENSGAFG00000009398	zgc:171482	93	84.507	ENSACLG00000010511	zgc:171482	83	98.319	Astatotilapia_calliptera
ENSGAFG00000009398	zgc:171482	100	93.694	ENSAMXG00000002299	zgc:171482	100	90.598	Astyanax_mexicanus
ENSGAFG00000009398	zgc:171482	100	94.771	ENSCSEG00000006509	zgc:171482	100	94.771	Cynoglossus_semilaevis
ENSGAFG00000009398	zgc:171482	100	74.419	ENSCVAG00000013606	zgc:171482	100	97.541	Cyprinodon_variegatus
ENSGAFG00000009398	zgc:171482	76	92.308	ENSDARG00000074415	zgc:171482	99	91.026	Danio_rerio
ENSGAFG00000009398	zgc:171482	77	94.915	ENSELUG00000021817	zgc:171482	85	94.915	Esox_lucius
ENSGAFG00000009398	zgc:171482	52	59.036	ENSELUG00000021794	-	54	59.036	Esox_lucius
ENSGAFG00000009398	zgc:171482	99	60.127	ENSELUG00000017517	-	60	84.444	Esox_lucius
ENSGAFG00000009398	zgc:171482	78	98.333	ENSFHEG00000002233	zgc:171482	100	95.082	Fundulus_heteroclitus
ENSGAFG00000009398	zgc:171482	100	71.856	ENSGMOG00000010508	zgc:171482	100	95.763	Gadus_morhua
ENSGAFG00000009398	zgc:171482	100	97.500	ENSGACG00000007680	zgc:171482	100	97.500	Gasterosteus_aculeatus
ENSGAFG00000009398	zgc:171482	78	98.319	ENSHBUG00000023289	zgc:171482	89	98.319	Haplochromis_burtoni
ENSGAFG00000009398	zgc:171482	78	91.736	ENSHCOG00000018086	zgc:171482	90	91.736	Hippocampus_comes
ENSGAFG00000009398	zgc:171482	82	89.600	ENSIPUG00000000361	zgc:171482	88	90.984	Ictalurus_punctatus
ENSGAFG00000009398	zgc:171482	52	57.831	ENSIPUG00000000356	-	68	50.962	Ictalurus_punctatus
ENSGAFG00000009398	zgc:171482	99	76.687	ENSKMAG00000005077	zgc:171482	86	97.500	Kryptolebias_marmoratus
ENSGAFG00000009398	zgc:171482	78	97.500	ENSLBEG00000023823	zgc:171482	86	97.500	Labrus_bergylta
ENSGAFG00000009398	zgc:171482	100	67.442	ENSLOCG00000008863	zgc:171482	97	89.344	Lepisosteus_oculatus
ENSGAFG00000009398	zgc:171482	78	97.500	ENSMAMG00000001031	zgc:171482	75	97.500	Mastacembelus_armatus
ENSGAFG00000009398	zgc:171482	100	69.006	ENSMZEG00005027721	zgc:171482	100	90.984	Maylandia_zebra
ENSGAFG00000009398	zgc:171482	78	98.333	ENSMMOG00000010523	zgc:171482	92	98.333	Mola_mola
ENSGAFG00000009398	zgc:171482	100	98.319	ENSMALG00000017883	zgc:171482	100	98.319	Monopterus_albus
ENSGAFG00000009398	zgc:171482	76	98.276	ENSNBRG00000021035	zgc:171482	87	98.276	Neolamprologus_brichardi
ENSGAFG00000009398	zgc:171482	99	72.832	ENSONIG00000018365	zgc:171482	98	97.500	Oreochromis_niloticus
ENSGAFG00000009398	zgc:171482	75	100.000	ENSORLG00000007607	zgc:171482	100	99.145	Oryzias_latipes
ENSGAFG00000009398	zgc:171482	75	99.130	ENSORLG00020003563	zgc:171482	100	90.984	Oryzias_latipes_hni
ENSGAFG00000009398	zgc:171482	75	100.000	ENSORLG00015008552	zgc:171482	100	99.145	Oryzias_latipes_hsok
ENSGAFG00000009398	zgc:171482	88	87.407	ENSOMEG00000003526	zgc:171482	83	98.305	Oryzias_melastigma
ENSGAFG00000009398	zgc:171482	72	90.909	ENSPKIG00000016244	zgc:171482	87	85.246	Paramormyrops_kingsleyae
ENSGAFG00000009398	zgc:171482	76	95.690	ENSPKIG00000015911	-	81	95.690	Paramormyrops_kingsleyae
ENSGAFG00000009398	zgc:171482	99	96.667	ENSPMGG00000020230	zgc:171482	100	96.667	Periophthalmus_magnuspinnatus
ENSGAFG00000009398	zgc:171482	99	99.167	ENSPFOG00000001974	zgc:171482	96	99.167	Poecilia_formosa
ENSGAFG00000009398	zgc:171482	99	78.528	ENSPLAG00000003327	zgc:171482	100	99.167	Poecilia_latipinna
ENSGAFG00000009398	zgc:171482	99	95.541	ENSPMEG00000004988	zgc:171482	95	95.541	Poecilia_mexicana
ENSGAFG00000009398	zgc:171482	90	87.681	ENSPREG00000019241	zgc:171482	87	99.167	Poecilia_reticulata
ENSGAFG00000009398	zgc:171482	93	84.507	ENSPNYG00000007773	zgc:171482	83	98.319	Pundamilia_nyererei
ENSGAFG00000009398	zgc:171482	99	93.913	ENSPNAG00000007619	zgc:171482	97	93.162	Pygocentrus_nattereri
ENSGAFG00000009398	zgc:171482	76	90.517	ENSSFOG00015021238	zgc:171482	78	90.517	Scleropages_formosus
ENSGAFG00000009398	zgc:171482	76	88.889	ENSSFOG00015016149	zgc:171482	94	88.889	Scleropages_formosus
ENSGAFG00000009398	zgc:171482	77	98.305	ENSSMAG00000002715	zgc:171482	76	98.305	Scophthalmus_maximus
ENSGAFG00000009398	zgc:171482	78	99.167	ENSSDUG00000008773	zgc:171482	85	99.167	Seriola_dumerili
ENSGAFG00000009398	zgc:171482	78	99.167	ENSSLDG00000019510	zgc:171482	85	99.167	Seriola_lalandi_dorsalis
ENSGAFG00000009398	zgc:171482	78	99.160	ENSSPAG00000013724	zgc:171482	94	99.160	Stegastes_partitus
ENSGAFG00000009398	zgc:171482	75	97.391	ENSTRUG00000005705	zgc:171482	68	97.391	Takifugu_rubripes
ENSGAFG00000009398	zgc:171482	100	56.647	ENSTNIG00000008679	zgc:171482	100	73.770	Tetraodon_nigroviridis
ENSGAFG00000009398	zgc:171482	88	50.000	ENSXETG00000013525	zmat4	76	91.111	Xenopus_tropicalis
ENSGAFG00000009398	zgc:171482	100	91.558	ENSXMAG00000002641	zgc:171482	100	91.558	Xiphophorus_maculatus