EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000009501 (Gene tree)
Gene ID: -
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 5527 bases
Position: chrNHOQ01002094.1:3815828-3821354
Accession: ZDB-GENE-990715-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000014050	SMN	PF06003.12	9.1e-114	1	1
ENSGAFP00000014051	SMN	PF06003.12	1.8e-104	1	2
ENSGAFP00000014051	SMN	PF06003.12	1.8e-104	2	2
ENSGAFP00000014054	SMN	PF06003.12	2.2e-97	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000014195	-	1069	-	ENSGAFP00000014051	306 (aa)	-	-
ENSGAFT00000014194	-	1000	-	ENSGAFP00000014050	283 (aa)	-	-
ENSGAFT00000014198	-	774	-	ENSGAFP00000014054	257 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000009501's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000009501's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000009501	smn1	93	55.602	ENSG00000205571	SMN2	83	68.421	Homo_sapiens
ENSGAFG00000009501	smn1	93	55.602	ENSG00000172062	SMN1	90	55.372	Homo_sapiens
ENSGAFG00000009501	smn1	86	30.357	ENSAPOG00000012753	-	64	45.283	Acanthochromis_polyacanthus
ENSGAFG00000009501	smn1	100	82.686	ENSAPOG00000011324	smn1	100	82.686	Acanthochromis_polyacanthus
ENSGAFG00000009501	smn1	94	51.648	ENSAMEG00000003316	-	89	52.708	Ailuropoda_melanoleuca
ENSGAFG00000009501	smn1	65	79.762	ENSACIG00000007598	smn1	93	80.357	Amphilophus_citrinellus
ENSGAFG00000009501	smn1	93	76.426	ENSACIG00000019772	-	99	76.426	Amphilophus_citrinellus
ENSGAFG00000009501	smn1	100	82.686	ENSAOCG00000024444	smn1	100	82.686	Amphiprion_ocellaris
ENSGAFG00000009501	smn1	100	82.686	ENSAPEG00000016504	smn1	100	82.686	Amphiprion_percula
ENSGAFG00000009501	smn1	95	82.593	ENSATEG00000002182	smn1	82	82.593	Anabas_testudineus
ENSGAFG00000009501	smn1	69	41.743	ENSAPLG00000010912	-	96	48.187	Anas_platyrhynchos
ENSGAFG00000009501	smn1	98	52.222	ENSACAG00000010017	-	93	54.406	Anolis_carolinensis
ENSGAFG00000009501	smn1	96	50.174	ENSANAG00000032133	-	95	50.704	Aotus_nancymaae
ENSGAFG00000009501	smn1	99	78.092	ENSACLG00000007308	smn1	94	78.092	Astatotilapia_calliptera
ENSGAFG00000009501	smn1	100	64.789	ENSAMXG00000013884	smn1	100	65.493	Astyanax_mexicanus
ENSGAFG00000009501	smn1	94	51.449	ENSBTAG00000005743	SMN2	93	52.347	Bos_taurus
ENSGAFG00000009501	smn1	93	56.846	ENSCJAG00000016290	-	90	56.612	Callithrix_jacchus
ENSGAFG00000009501	smn1	94	52.000	ENSCAFG00000007812	SMN	93	53.285	Canis_familiaris
ENSGAFG00000009501	smn1	94	52.000	ENSCAFG00020019229	-	86	53.285	Canis_lupus_dingo
ENSGAFG00000009501	smn1	94	51.273	ENSCHIG00000015559	-	91	51.971	Capra_hircus
ENSGAFG00000009501	smn1	93	56.017	ENSTSYG00000012058	-	92	55.785	Carlito_syrichta
ENSGAFG00000009501	smn1	73	45.411	ENSCAPG00000011021	-	88	44.221	Cavia_aperea
ENSGAFG00000009501	smn1	94	50.179	ENSCPOG00000012328	-	93	51.228	Cavia_porcellus
ENSGAFG00000009501	smn1	94	50.730	ENSCPOG00000036973	-	92	51.429	Cavia_porcellus
ENSGAFG00000009501	smn1	93	56.432	ENSCCAG00000018127	-	90	56.198	Cebus_capucinus
ENSGAFG00000009501	smn1	93	55.602	ENSCATG00000037002	-	90	55.372	Cercocebus_atys
ENSGAFG00000009501	smn1	94	50.719	ENSCLAG00000000284	-	91	53.571	Chinchilla_lanigera
ENSGAFG00000009501	smn1	94	51.292	ENSCSAG00000015688	-	91	52.574	Chlorocebus_sabaeus
ENSGAFG00000009501	smn1	67	80.000	ENSCHOG00000007346	-	100	48.425	Choloepus_hoffmanni
ENSGAFG00000009501	smn1	96	50.694	ENSCPBG00000010968	-	96	52.400	Chrysemys_picta_bellii
ENSGAFG00000009501	smn1	94	51.852	ENSCANG00000033324	-	90	51.240	Colobus_angolensis_palliatus
ENSGAFG00000009501	smn1	93	56.017	ENSCANG00000038242	-	93	53.409	Colobus_angolensis_palliatus
ENSGAFG00000009501	smn1	94	41.045	ENSCGRG00001016998	-	91	38.545	Cricetulus_griseus_chok1gshd
ENSGAFG00000009501	smn1	94	53.333	ENSCGRG00001017959	-	93	52.174	Cricetulus_griseus_chok1gshd
ENSGAFG00000009501	smn1	94	53.333	ENSCGRG00000007698	Smn1	93	52.174	Cricetulus_griseus_crigri
ENSGAFG00000009501	smn1	97	65.614	ENSCSEG00000015227	smn1	99	65.965	Cynoglossus_semilaevis
ENSGAFG00000009501	smn1	100	90.493	ENSCVAG00000007498	smn1	100	90.493	Cyprinodon_variegatus
ENSGAFG00000009501	smn1	100	64.583	ENSDARG00000018494	smn1	100	62.759	Danio_rerio
ENSGAFG00000009501	smn1	82	42.424	ENSDNOG00000045949	-	70	49.701	Dasypus_novemcinctus
ENSGAFG00000009501	smn1	82	46.444	ENSDNOG00000007283	-	97	47.107	Dasypus_novemcinctus
ENSGAFG00000009501	smn1	93	43.284	ENSDORG00000007082	Smn1	91	44.400	Dipodomys_ordii
ENSGAFG00000009501	smn1	59	50.641	ENSETEG00000001406	-	87	46.369	Echinops_telfairi
ENSGAFG00000009501	smn1	96	41.259	ENSEBUG00000011902	smn1	96	41.901	Eptatretus_burgeri
ENSGAFG00000009501	smn1	89	46.718	ENSEASG00005018000	-	89	47.692	Equus_asinus_asinus
ENSGAFG00000009501	smn1	94	51.095	ENSECAG00000015215	-	93	51.812	Equus_caballus
ENSGAFG00000009501	smn1	88	50.190	ENSEEUG00000015777	-	100	48.819	Erinaceus_europaeus
ENSGAFG00000009501	smn1	97	69.343	ENSELUG00000018067	smn1	100	67.845	Esox_lucius
ENSGAFG00000009501	smn1	94	53.137	ENSFCAG00000028292	SMN	92	53.719	Felis_catus
ENSGAFG00000009501	smn1	95	55.797	ENSFALG00000012320	-	95	51.765	Ficedula_albicollis
ENSGAFG00000009501	smn1	94	46.809	ENSFDAG00000017683	-	92	49.306	Fukomys_damarensis
ENSGAFG00000009501	smn1	97	89.493	ENSFHEG00000018508	smn1	100	89.493	Fundulus_heteroclitus
ENSGAFG00000009501	smn1	100	62.456	ENSGMOG00000017279	smn1	98	63.958	Gadus_morhua
ENSGAFG00000009501	smn1	94	51.880	ENSGALG00000002430	SMN	95	55.159	Gallus_gallus
ENSGAFG00000009501	smn1	100	80.565	ENSGACG00000010584	smn1	97	78.799	Gasterosteus_aculeatus
ENSGAFG00000009501	smn1	85	50.000	ENSGAGG00000013639	-	95	39.896	Gopherus_agassizii
ENSGAFG00000009501	smn1	96	52.708	ENSGAGG00000011374	-	95	56.475	Gopherus_agassizii
ENSGAFG00000009501	smn1	67	54.913	ENSGGOG00000026704	-	85	53.226	Gorilla_gorilla
ENSGAFG00000009501	smn1	90	55.794	ENSGGOG00000003872	-	93	55.794	Gorilla_gorilla
ENSGAFG00000009501	smn1	100	80.565	ENSHBUG00000013987	smn1	100	80.565	Haplochromis_burtoni
ENSGAFG00000009501	smn1	94	46.468	ENSHGLG00000001905	-	94	50.735	Heterocephalus_glaber_female
ENSGAFG00000009501	smn1	94	49.275	ENSHGLG00000001018	-	92	50.355	Heterocephalus_glaber_female
ENSGAFG00000009501	smn1	94	49.275	ENSHGLG00100011252	-	92	50.355	Heterocephalus_glaber_male
ENSGAFG00000009501	smn1	92	46.296	ENSHGLG00100018676	-	96	50.752	Heterocephalus_glaber_male
ENSGAFG00000009501	smn1	94	72.285	ENSHCOG00000017136	smn1	89	72.830	Hippocampus_comes
ENSGAFG00000009501	smn1	100	65.972	ENSIPUG00000012580	smn1	86	66.667	Ictalurus_punctatus
ENSGAFG00000009501	smn1	91	50.379	ENSSTOG00000012288	-	93	52.075	Ictidomys_tridecemlineatus
ENSGAFG00000009501	smn1	68	43.429	ENSJJAG00000014853	-	82	72.093	Jaculus_jaculus
ENSGAFG00000009501	smn1	100	81.469	ENSKMAG00000007239	smn1	100	81.469	Kryptolebias_marmoratus
ENSGAFG00000009501	smn1	100	82.042	ENSLBEG00000022550	smn1	100	82.042	Labrus_bergylta
ENSGAFG00000009501	smn1	97	36.149	ENSLACG00000009808	-	95	36.395	Latimeria_chalumnae
ENSGAFG00000009501	smn1	100	55.474	ENSLOCG00000011339	smn1	100	59.470	Lepisosteus_oculatus
ENSGAFG00000009501	smn1	97	32.979	ENSLOCG00000000801	-	94	30.450	Lepisosteus_oculatus
ENSGAFG00000009501	smn1	94	50.362	ENSLAFG00000003425	-	99	45.333	Loxodonta_africana
ENSGAFG00000009501	smn1	93	56.432	ENSMFAG00000031523	SMN1	95	51.894	Macaca_fascicularis
ENSGAFG00000009501	smn1	94	49.077	ENSMFAG00000008812	-	91	50.362	Macaca_fascicularis
ENSGAFG00000009501	smn1	94	48.339	ENSMMUG00000030594	-	91	49.638	Macaca_mulatta
ENSGAFG00000009501	smn1	93	56.432	ENSMMUG00000020214	SMN1	90	56.198	Macaca_mulatta
ENSGAFG00000009501	smn1	76	39.819	ENSMNEG00000036423	-	82	41.204	Macaca_nemestrina
ENSGAFG00000009501	smn1	93	56.432	ENSMNEG00000035094	-	90	56.198	Macaca_nemestrina
ENSGAFG00000009501	smn1	93	56.432	ENSMLEG00000041902	-	91	56.198	Mandrillus_leucophaeus
ENSGAFG00000009501	smn1	100	80.634	ENSMAMG00000011034	smn1	100	80.634	Mastacembelus_armatus
ENSGAFG00000009501	smn1	100	80.919	ENSMZEG00005013634	smn1	100	80.919	Maylandia_zebra
ENSGAFG00000009501	smn1	69	50.510	ENSMGAG00000008889	-	94	49.171	Meleagris_gallopavo
ENSGAFG00000009501	smn1	94	51.111	ENSMAUG00000010262	Smn1	93	51.799	Mesocricetus_auratus
ENSGAFG00000009501	smn1	83	44.583	ENSMICG00000034708	-	80	54.696	Microcebus_murinus
ENSGAFG00000009501	smn1	94	53.137	ENSMOCG00000017833	Smn1	92	52.206	Microtus_ochrogaster
ENSGAFG00000009501	smn1	96	71.483	ENSMMOG00000005504	smn1	97	74.713	Mola_mola
ENSGAFG00000009501	smn1	97	51.379	ENSMODG00000001436	-	95	53.521	Monodelphis_domestica
ENSGAFG00000009501	smn1	100	82.746	ENSMALG00000008025	smn1	100	82.746	Monopterus_albus
ENSGAFG00000009501	smn1	94	52.190	MGP_CAROLIEiJ_G0018836	Smn1	93	52.190	Mus_caroli
ENSGAFG00000009501	smn1	94	51.825	ENSMUSG00000021645	Smn1	93	51.852	Mus_musculus
ENSGAFG00000009501	smn1	94	53.704	MGP_PahariEiJ_G0015911	Smn1	93	53.704	Mus_pahari
ENSGAFG00000009501	smn1	94	52.190	MGP_SPRETEiJ_G0019718	Smn1	93	51.852	Mus_spretus
ENSGAFG00000009501	smn1	92	51.866	ENSMPUG00000014470	-	93	53.137	Mustela_putorius_furo
ENSGAFG00000009501	smn1	94	51.812	ENSMLUG00000010603	-	89	52.347	Myotis_lucifugus
ENSGAFG00000009501	smn1	94	49.817	ENSNGAG00000019833	Smn1	93	51.825	Nannospalax_galili
ENSGAFG00000009501	smn1	100	82.332	ENSNBRG00000023000	smn1	100	82.332	Neolamprologus_brichardi
ENSGAFG00000009501	smn1	94	55.785	ENSNLEG00000004454	-	90	55.785	Nomascus_leucogenys
ENSGAFG00000009501	smn1	80	47.186	ENSMEUG00000011393	-	100	45.259	Notamacropus_eugenii
ENSGAFG00000009501	smn1	87	49.407	ENSOPRG00000002015	-	100	52.672	Ochotona_princeps
ENSGAFG00000009501	smn1	91	51.894	ENSODEG00000015976	-	90	51.111	Octodon_degus
ENSGAFG00000009501	smn1	100	81.979	ENSONIG00000011799	smn1	100	81.979	Oreochromis_niloticus
ENSGAFG00000009501	smn1	94	47.727	ENSOANG00000001626	-	95	52.708	Ornithorhynchus_anatinus
ENSGAFG00000009501	smn1	94	52.030	ENSOCUG00000017097	-	92	52.190	Oryctolagus_cuniculus
ENSGAFG00000009501	smn1	94	40.860	ENSOCUG00000025183	-	92	44.061	Oryctolagus_cuniculus
ENSGAFG00000009501	smn1	94	51.812	ENSOCUG00000026649	-	92	51.613	Oryctolagus_cuniculus
ENSGAFG00000009501	smn1	100	81.272	ENSORLG00000010552	smn1	100	81.272	Oryzias_latipes
ENSGAFG00000009501	smn1	100	81.853	ENSORLG00020007936	smn1	100	81.853	Oryzias_latipes_hni
ENSGAFG00000009501	smn1	100	81.272	ENSORLG00015022425	smn1	100	81.272	Oryzias_latipes_hsok
ENSGAFG00000009501	smn1	100	81.272	ENSOMEG00000007824	smn1	100	81.272	Oryzias_melastigma
ENSGAFG00000009501	smn1	91	47.388	ENSOGAG00000031414	-	92	46.520	Otolemur_garnettii
ENSGAFG00000009501	smn1	94	50.182	ENSOARG00000005425	-	97	51.087	Ovis_aries
ENSGAFG00000009501	smn1	93	55.187	ENSPPAG00000036640	-	90	54.959	Pan_paniscus
ENSGAFG00000009501	smn1	94	53.506	ENSPPRG00000005575	-	92	54.132	Panthera_pardus
ENSGAFG00000009501	smn1	93	54.357	ENSPTIG00000007745	-	92	54.132	Panthera_tigris_altaica
ENSGAFG00000009501	smn1	93	55.602	ENSPTRG00000016955	-	90	55.372	Pan_troglodytes
ENSGAFG00000009501	smn1	94	49.815	ENSPANG00000000253	-	91	51.417	Papio_anubis
ENSGAFG00000009501	smn1	94	56.198	ENSPANG00000013601	-	90	56.198	Papio_anubis
ENSGAFG00000009501	smn1	100	60.920	ENSPKIG00000011096	smn1	100	60.536	Paramormyrops_kingsleyae
ENSGAFG00000009501	smn1	92	52.015	ENSPSIG00000014787	-	83	55.378	Pelodiscus_sinensis
ENSGAFG00000009501	smn1	100	67.972	ENSPMGG00000012285	smn1	100	68.214	Periophthalmus_magnuspinnatus
ENSGAFG00000009501	smn1	92	40.293	ENSPMAG00000005004	smn1	89	40.824	Petromyzon_marinus
ENSGAFG00000009501	smn1	97	51.034	ENSPCIG00000025764	-	97	53.169	Phascolarctos_cinereus
ENSGAFG00000009501	smn1	100	98.233	ENSPFOG00000007786	smn1	100	98.233	Poecilia_formosa
ENSGAFG00000009501	smn1	100	98.587	ENSPLAG00000012071	smn1	100	98.587	Poecilia_latipinna
ENSGAFG00000009501	smn1	100	98.233	ENSPMEG00000017085	smn1	100	98.233	Poecilia_mexicana
ENSGAFG00000009501	smn1	100	98.233	ENSPREG00000005824	smn1	100	98.233	Poecilia_reticulata
ENSGAFG00000009501	smn1	92	49.621	ENSPPYG00000015533	-	95	50.373	Pongo_abelii
ENSGAFG00000009501	smn1	88	40.161	ENSPPYG00000019189	-	99	40.625	Pongo_abelii
ENSGAFG00000009501	smn1	91	50.562	ENSPCAG00000004187	-	97	50.370	Procavia_capensis
ENSGAFG00000009501	smn1	70	50.276	ENSPCOG00000022307	-	65	58.333	Propithecus_coquereli
ENSGAFG00000009501	smn1	94	53.455	ENSPVAG00000005977	-	92	54.513	Pteropus_vampyrus
ENSGAFG00000009501	smn1	100	82.332	ENSPNYG00000014148	smn1	100	82.332	Pundamilia_nyererei
ENSGAFG00000009501	smn1	100	64.211	ENSPNAG00000014007	smn1	87	66.667	Pygocentrus_nattereri
ENSGAFG00000009501	smn1	95	51.812	ENSRNOG00000018067	Smn1	93	51.636	Rattus_norvegicus
ENSGAFG00000009501	smn1	91	51.029	ENSRBIG00000036775	-	88	51.029	Rhinopithecus_bieti
ENSGAFG00000009501	smn1	93	56.017	ENSRBIG00000037052	-	90	55.785	Rhinopithecus_bieti
ENSGAFG00000009501	smn1	93	56.017	ENSRROG00000039399	-	90	55.785	Rhinopithecus_roxellana
ENSGAFG00000009501	smn1	94	50.996	ENSRROG00000031088	-	91	51.406	Rhinopithecus_roxellana
ENSGAFG00000009501	smn1	56	57.333	ENSSBOG00000020112	-	87	46.800	Saimiri_boliviensis_boliviensis
ENSGAFG00000009501	smn1	93	57.261	ENSSBOG00000011665	-	90	57.025	Saimiri_boliviensis_boliviensis
ENSGAFG00000009501	smn1	96	51.557	ENSSHAG00000001499	-	98	52.747	Sarcophilus_harrisii
ENSGAFG00000009501	smn1	100	61.832	ENSSFOG00015015507	smn1	100	61.832	Scleropages_formosus
ENSGAFG00000009501	smn1	100	80.212	ENSSMAG00000007922	smn1	100	80.212	Scophthalmus_maximus
ENSGAFG00000009501	smn1	100	85.915	ENSSDUG00000018533	smn1	100	85.915	Seriola_dumerili
ENSGAFG00000009501	smn1	100	86.268	ENSSLDG00000021135	smn1	100	86.268	Seriola_lalandi_dorsalis
ENSGAFG00000009501	smn1	96	55.714	ENSSPUG00000000373	-	99	53.818	Sphenodon_punctatus
ENSGAFG00000009501	smn1	100	82.686	ENSSPAG00000004345	smn1	100	82.686	Stegastes_partitus
ENSGAFG00000009501	smn1	94	52.536	ENSSSCG00000016970	-	92	53.047	Sus_scrofa
ENSGAFG00000009501	smn1	93	42.276	ENSSSCG00000029127	-	67	68.750	Sus_scrofa
ENSGAFG00000009501	smn1	91	52.000	ENSTGUG00000001548	-	95	48.881	Taeniopygia_guttata
ENSGAFG00000009501	smn1	100	65.724	ENSTRUG00000000736	smn	100	68.198	Takifugu_rubripes
ENSGAFG00000009501	smn1	100	64.828	ENSTNIG00000009892	smn1	100	66.897	Tetraodon_nigroviridis
ENSGAFG00000009501	smn1	59	59.873	ENSTBEG00000002399	-	83	55.618	Tupaia_belangeri
ENSGAFG00000009501	smn1	59	58.333	ENSTTRG00000005080	-	91	53.650	Tursiops_truncatus
ENSGAFG00000009501	smn1	59	60.256	ENSUAMG00000024947	-	57	60.897	Ursus_americanus
ENSGAFG00000009501	smn1	59	60.256	ENSUMAG00000007842	-	69	53.430	Ursus_maritimus
ENSGAFG00000009501	smn1	63	77.778	ENSVPAG00000009887	-	55	82.609	Vicugna_pacos
ENSGAFG00000009501	smn1	94	52.000	ENSVVUG00000006934	-	93	53.285	Vulpes_vulpes
ENSGAFG00000009501	smn1	95	57.040	ENSXETG00000018189	smn2	95	55.401	Xenopus_tropicalis
ENSGAFG00000009501	smn1	90	31.724	ENSXETG00000004912	-	80	63.793	Xenopus_tropicalis
ENSGAFG00000009501	smn1	100	97.276	ENSXMAG00000001521	smn1	100	97.276	Xiphophorus_maculatus