EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000011061 (Gene tree)
Gene ID: -
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease (deadenylation nuclease)
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 11043 bases
Position: chrNHOQ01000160.1:114502-125544
Accession: ZDB-GENE-040426-880
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000016380	RNA_bind	PF08675.11	1.5e-33	1	1
ENSGAFP00000016380	CAF1	PF04857.20	3.7e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000016536	-	3956	-	ENSGAFP00000016380	684 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000011061's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000011061's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000011061	parn	84	72.987	ENSG00000140694	PARN	91	79.661	Homo_sapiens
ENSGAFG00000011061	parn	84	71.524	ENSAMEG00000011208	PARN	90	72.326	Ailuropoda_melanoleuca
ENSGAFG00000011061	parn	87	78.538	ENSACIG00000000619	parn	100	78.538	Amphilophus_citrinellus
ENSGAFG00000011061	parn	100	82.779	ENSAOCG00000003465	parn	100	83.213	Amphiprion_ocellaris
ENSGAFG00000011061	parn	73	87.625	ENSAPEG00000010661	parn	95	87.625	Amphiprion_percula
ENSGAFG00000011061	parn	100	84.279	ENSATEG00000004661	parn	100	84.279	Anabas_testudineus
ENSGAFG00000011061	parn	83	72.014	ENSAPLG00000013914	PARN	89	73.090	Anas_platyrhynchos
ENSGAFG00000011061	parn	84	73.737	ENSACAG00000004973	PARN	89	73.980	Anolis_carolinensis
ENSGAFG00000011061	parn	84	72.987	ENSANAG00000031516	PARN	91	79.661	Aotus_nancymaae
ENSGAFG00000011061	parn	100	84.111	ENSACLG00000004742	parn	100	84.840	Astatotilapia_calliptera
ENSGAFG00000011061	parn	100	70.102	ENSAMXG00000012390	parn	100	70.247	Astyanax_mexicanus
ENSGAFG00000011061	parn	84	70.034	ENSBTAG00000018097	PARN	89	72.658	Bos_taurus
ENSGAFG00000011061	parn	84	73.154	ENSCJAG00000015866	PARN	91	79.661	Callithrix_jacchus
ENSGAFG00000011061	parn	84	71.309	ENSCAFG00000018795	PARN	90	72.184	Canis_familiaris
ENSGAFG00000011061	parn	84	71.477	ENSCAFG00020024126	PARN	90	72.355	Canis_lupus_dingo
ENSGAFG00000011061	parn	84	72.727	ENSCHIG00000018143	PARN	90	73.288	Capra_hircus
ENSGAFG00000011061	parn	68	51.559	ENSCAPG00000007984	PARN	78	51.559	Cavia_aperea
ENSGAFG00000011061	parn	84	72.175	ENSCPOG00000002263	PARN	90	72.806	Cavia_porcellus
ENSGAFG00000011061	parn	84	73.154	ENSCCAG00000030367	PARN	91	79.661	Cebus_capucinus
ENSGAFG00000011061	parn	79	77.323	ENSCATG00000041368	PARN	95	77.323	Cercocebus_atys
ENSGAFG00000011061	parn	84	73.232	ENSCLAG00000015406	PARN	90	73.883	Chinchilla_lanigera
ENSGAFG00000011061	parn	84	73.154	ENSCSAG00000008142	PARN	90	73.379	Chlorocebus_sabaeus
ENSGAFG00000011061	parn	82	56.799	ENSCHOG00000007014	PARN	90	56.944	Choloepus_hoffmanni
ENSGAFG00000011061	parn	75	72.814	ENSCPBG00000006609	PARN	89	72.937	Chrysemys_picta_bellii
ENSGAFG00000011061	parn	75	41.386	ENSCING00000010142	-	99	41.386	Ciona_intestinalis
ENSGAFG00000011061	parn	84	62.438	ENSCANG00000028849	-	76	79.661	Colobus_angolensis_palliatus
ENSGAFG00000011061	parn	83	72.759	ENSCGRG00001012096	Parn	84	75.836	Cricetulus_griseus_chok1gshd
ENSGAFG00000011061	parn	83	72.759	ENSCGRG00000004939	Parn	84	75.836	Cricetulus_griseus_crigri
ENSGAFG00000011061	parn	100	79.330	ENSCSEG00000002064	parn	100	79.330	Cynoglossus_semilaevis
ENSGAFG00000011061	parn	100	90.073	ENSCVAG00000014848	parn	100	90.365	Cyprinodon_variegatus
ENSGAFG00000011061	parn	100	65.612	ENSDARG00000102634	parn	100	66.667	Danio_rerio
ENSGAFG00000011061	parn	84	72.513	ENSDNOG00000000833	PARN	94	77.138	Dasypus_novemcinctus
ENSGAFG00000011061	parn	61	74.242	ENSETEG00000014828	-	69	74.242	Echinops_telfairi
ENSGAFG00000011061	parn	84	72.589	ENSEASG00005011400	PARN	90	73.070	Equus_asinus_asinus
ENSGAFG00000011061	parn	84	72.420	ENSECAG00000017792	PARN	90	72.899	Equus_caballus
ENSGAFG00000011061	parn	71	63.063	ENSEEUG00000010370	PARN	70	63.063	Erinaceus_europaeus
ENSGAFG00000011061	parn	100	73.768	ENSELUG00000013139	parn	90	73.585	Esox_lucius
ENSGAFG00000011061	parn	84	71.906	ENSFCAG00000044961	PARN	86	77.966	Felis_catus
ENSGAFG00000011061	parn	84	72.279	ENSFALG00000003911	PARN	98	64.012	Ficedula_albicollis
ENSGAFG00000011061	parn	84	73.064	ENSFDAG00000009234	PARN	90	73.711	Fukomys_damarensis
ENSGAFG00000011061	parn	87	86.432	ENSFHEG00000013738	parn	92	96.610	Fundulus_heteroclitus
ENSGAFG00000011061	parn	81	82.278	ENSGMOG00000003231	parn	99	82.278	Gadus_morhua
ENSGAFG00000011061	parn	90	69.545	ENSGALG00000003091	PARN	91	73.830	Gallus_gallus
ENSGAFG00000011061	parn	84	82.414	ENSGACG00000019501	parn	100	74.026	Gasterosteus_aculeatus
ENSGAFG00000011061	parn	84	72.987	ENSGGOG00000025224	PARN	91	79.661	Gorilla_gorilla
ENSGAFG00000011061	parn	100	83.988	ENSHBUG00000017906	parn	100	84.716	Haplochromis_burtoni
ENSGAFG00000011061	parn	84	72.727	ENSHGLG00000010886	PARN	90	73.368	Heterocephalus_glaber_female
ENSGAFG00000011061	parn	84	72.727	ENSHGLG00100014659	PARN	90	73.368	Heterocephalus_glaber_male
ENSGAFG00000011061	parn	81	79.603	ENSHCOG00000008683	parn	95	79.603	Hippocampus_comes
ENSGAFG00000011061	parn	100	59.366	ENSIPUG00000012401	parn	100	59.026	Ictalurus_punctatus
ENSGAFG00000011061	parn	84	72.074	ENSSTOG00000007519	PARN	91	72.619	Ictidomys_tridecemlineatus
ENSGAFG00000011061	parn	84	71.769	ENSJJAG00000023049	Parn	90	72.491	Jaculus_jaculus
ENSGAFG00000011061	parn	100	85.965	ENSKMAG00000009462	parn	100	85.965	Kryptolebias_marmoratus
ENSGAFG00000011061	parn	93	83.281	ENSLBEG00000009167	parn	99	83.281	Labrus_bergylta
ENSGAFG00000011061	parn	73	74.008	ENSLACG00000004207	PARN	100	72.877	Latimeria_chalumnae
ENSGAFG00000011061	parn	100	69.054	ENSLOCG00000000715	parn	100	69.054	Lepisosteus_oculatus
ENSGAFG00000011061	parn	84	73.333	ENSLAFG00000015036	PARN	90	73.739	Loxodonta_africana
ENSGAFG00000011061	parn	84	69.799	ENSMFAG00000044852	PARN	86	79.661	Macaca_fascicularis
ENSGAFG00000011061	parn	84	72.987	ENSMMUG00000018849	PARN	86	79.661	Macaca_mulatta
ENSGAFG00000011061	parn	84	73.154	ENSMNEG00000045108	PARN	86	79.661	Macaca_nemestrina
ENSGAFG00000011061	parn	84	72.987	ENSMLEG00000031743	PARN	86	79.661	Mandrillus_leucophaeus
ENSGAFG00000011061	parn	100	82.583	ENSMAMG00000006939	parn	100	83.019	Mastacembelus_armatus
ENSGAFG00000011061	parn	100	84.111	ENSMZEG00005013590	parn	100	84.840	Maylandia_zebra
ENSGAFG00000011061	parn	83	70.478	ENSMGAG00000001004	PARN	89	71.529	Meleagris_gallopavo
ENSGAFG00000011061	parn	83	66.893	ENSMAUG00000008025	Parn	90	67.123	Mesocricetus_auratus
ENSGAFG00000011061	parn	84	72.651	ENSMICG00000016053	PARN	91	77.966	Microcebus_murinus
ENSGAFG00000011061	parn	72	78.182	ENSMOCG00000022211	Parn	100	78.182	Microtus_ochrogaster
ENSGAFG00000011061	parn	81	85.586	ENSMMOG00000011333	parn	90	85.586	Mola_mola
ENSGAFG00000011061	parn	72	80.684	ENSMODG00000004915	PARN	99	80.684	Monodelphis_domestica
ENSGAFG00000011061	parn	96	82.701	ENSMALG00000019426	parn	94	87.770	Monopterus_albus
ENSGAFG00000011061	parn	83	72.145	MGP_CAROLIEiJ_G0020466	Parn	89	72.935	Mus_caroli
ENSGAFG00000011061	parn	83	71.527	ENSMUSG00000022685	Parn	100	74.390	Mus_musculus
ENSGAFG00000011061	parn	83	72.049	MGP_PahariEiJ_G0016172	Parn	90	72.049	Mus_pahari
ENSGAFG00000011061	parn	83	72.041	MGP_SPRETEiJ_G0021361	Parn	89	72.822	Mus_spretus
ENSGAFG00000011061	parn	84	72.175	ENSMPUG00000014464	PARN	90	72.899	Mustela_putorius_furo
ENSGAFG00000011061	parn	72	77.576	ENSMLUG00000005414	PARN	100	77.576	Myotis_lucifugus
ENSGAFG00000011061	parn	81	87.568	ENSNBRG00000006805	parn	93	87.568	Neolamprologus_brichardi
ENSGAFG00000011061	parn	84	73.322	ENSNLEG00000010241	PARN	91	79.661	Nomascus_leucogenys
ENSGAFG00000011061	parn	69	65.000	ENSMEUG00000008178	-	74	65.000	Notamacropus_eugenii
ENSGAFG00000011061	parn	82	68.566	ENSOPRG00000012187	PARN	90	68.815	Ochotona_princeps
ENSGAFG00000011061	parn	84	68.221	ENSODEG00000001617	PARN	90	68.476	Octodon_degus
ENSGAFG00000011061	parn	100	83.988	ENSONIG00000000151	parn	100	84.716	Oreochromis_niloticus
ENSGAFG00000011061	parn	83	72.232	ENSOCUG00000000322	PARN	90	72.790	Oryctolagus_cuniculus
ENSGAFG00000011061	parn	100	81.633	ENSORLG00020010313	parn	100	81.778	Oryzias_latipes_hni
ENSGAFG00000011061	parn	100	81.778	ENSORLG00015000300	parn	100	81.924	Oryzias_latipes_hsok
ENSGAFG00000011061	parn	100	81.223	ENSOMEG00000019555	parn	100	81.223	Oryzias_melastigma
ENSGAFG00000011061	parn	72	77.621	ENSOGAG00000014626	PARN	100	77.621	Otolemur_garnettii
ENSGAFG00000011061	parn	72	79.596	ENSOARG00000007574	PARN	100	79.596	Ovis_aries
ENSGAFG00000011061	parn	84	72.819	ENSPPAG00000031438	PARN	91	79.661	Pan_paniscus
ENSGAFG00000011061	parn	84	71.906	ENSPPRG00000018583	PARN	86	77.966	Panthera_pardus
ENSGAFG00000011061	parn	84	71.906	ENSPTIG00000012135	PARN	86	77.966	Panthera_tigris_altaica
ENSGAFG00000011061	parn	84	72.819	ENSPTRG00000007792	PARN	91	79.661	Pan_troglodytes
ENSGAFG00000011061	parn	84	70.638	ENSPANG00000020099	PARN	86	79.661	Papio_anubis
ENSGAFG00000011061	parn	99	67.472	ENSPKIG00000022807	parn	96	67.188	Paramormyrops_kingsleyae
ENSGAFG00000011061	parn	83	73.096	ENSPSIG00000014804	PARN	90	73.379	Pelodiscus_sinensis
ENSGAFG00000011061	parn	90	76.423	ENSPMGG00000014431	parn	85	76.748	Periophthalmus_magnuspinnatus
ENSGAFG00000011061	parn	83	70.812	ENSPEMG00000018439	Parn	90	71.080	Peromyscus_maniculatus_bairdii
ENSGAFG00000011061	parn	76	68.979	ENSPMAG00000003956	parn	98	68.979	Petromyzon_marinus
ENSGAFG00000011061	parn	62	72.170	ENSPCIG00000001259	PARN	91	79.661	Phascolarctos_cinereus
ENSGAFG00000011061	parn	100	97.080	ENSPFOG00000012823	parn	100	97.080	Poecilia_formosa
ENSGAFG00000011061	parn	100	97.372	ENSPLAG00000006395	parn	100	97.372	Poecilia_latipinna
ENSGAFG00000011061	parn	100	97.372	ENSPMEG00000007711	parn	100	97.372	Poecilia_mexicana
ENSGAFG00000011061	parn	100	97.664	ENSPREG00000000147	parn	100	97.664	Poecilia_reticulata
ENSGAFG00000011061	parn	84	72.408	ENSPPYG00000007123	PARN	90	72.619	Pongo_abelii
ENSGAFG00000011061	parn	79	62.633	ENSPCAG00000001741	PARN	82	67.129	Procavia_capensis
ENSGAFG00000011061	parn	84	69.849	ENSPCOG00000019292	PARN	91	77.966	Propithecus_coquereli
ENSGAFG00000011061	parn	83	70.000	ENSPVAG00000002547	PARN	90	70.526	Pteropus_vampyrus
ENSGAFG00000011061	parn	100	83.697	ENSPNYG00000006835	parn	100	84.425	Pundamilia_nyererei
ENSGAFG00000011061	parn	93	69.984	ENSPNAG00000018905	parn	100	69.984	Pygocentrus_nattereri
ENSGAFG00000011061	parn	100	63.610	ENSRNOG00000002912	Parn	96	77.551	Rattus_norvegicus
ENSGAFG00000011061	parn	84	71.309	ENSSBOG00000034726	PARN	86	79.661	Saimiri_boliviensis_boliviensis
ENSGAFG00000011061	parn	61	79.187	ENSSHAG00000008493	PARN	93	79.187	Sarcophilus_harrisii
ENSGAFG00000011061	parn	100	68.848	ENSSFOG00015014165	parn	98	72.591	Scleropages_formosus
ENSGAFG00000011061	parn	100	79.886	ENSSMAG00000000685	parn	100	80.456	Scophthalmus_maximus
ENSGAFG00000011061	parn	100	84.593	ENSSDUG00000014555	parn	100	85.174	Seriola_dumerili
ENSGAFG00000011061	parn	63	80.000	ENSSARG00000014339	PARN	75	80.000	Sorex_araneus
ENSGAFG00000011061	parn	84	72.128	ENSSPUG00000007719	PARN	90	72.680	Sphenodon_punctatus
ENSGAFG00000011061	parn	100	84.571	ENSSPAG00000007095	parn	100	85.153	Stegastes_partitus
ENSGAFG00000011061	parn	84	72.466	ENSSSCG00000007878	PARN	80	73.196	Sus_scrofa
ENSGAFG00000011061	parn	83	72.061	ENSTGUG00000004971	PARN	82	77.256	Taeniopygia_guttata
ENSGAFG00000011061	parn	83	84.737	ENSTNIG00000008252	parn	100	74.746	Tetraodon_nigroviridis
ENSGAFG00000011061	parn	76	61.194	ENSTBEG00000010407	PARN	89	61.450	Tupaia_belangeri
ENSGAFG00000011061	parn	83	68.493	ENSTTRG00000002843	PARN	77	78.645	Tursiops_truncatus
ENSGAFG00000011061	parn	64	69.336	ENSUAMG00000008283	PARN	94	65.904	Ursus_americanus
ENSGAFG00000011061	parn	84	71.906	ENSUMAG00000004527	PARN	100	64.900	Ursus_maritimus
ENSGAFG00000011061	parn	83	69.779	ENSVPAG00000008968	PARN	93	70.466	Vicugna_pacos
ENSGAFG00000011061	parn	84	71.644	ENSVVUG00000019509	PARN	90	72.526	Vulpes_vulpes
ENSGAFG00000011061	parn	83	69.558	ENSXETG00000010994	parn	99	75.191	Xenopus_tropicalis
ENSGAFG00000011061	parn	87	92.797	ENSXCOG00000015990	parn	100	92.797	Xiphophorus_couchianus
ENSGAFG00000011061	parn	100	97.515	ENSXMAG00000014783	parn	100	97.515	Xiphophorus_maculatus