EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000011582 (Gene tree)
Gene ID: -
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 5556 bases
Position: chrNHOQ01001229.1:14411909-14417464
Accession: ZDB-GENE-030131-614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000017142	TUDOR	PF00567.24	0.00042	1	1
ENSGAFP00000017142	SMN	PF06003.12	4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000017308	-	2463	-	ENSGAFP00000017142	238 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000011582's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000011582's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000011582	smndc1	100	75.210	ENSG00000119953	SMNDC1	100	75.210	Homo_sapiens
ENSGAFG00000011582	smndc1	100	90.336	ENSAPOG00000021772	smndc1	100	90.336	Acanthochromis_polyacanthus
ENSGAFG00000011582	smndc1	100	75.210	ENSAMEG00000005251	SMNDC1	100	75.210	Ailuropoda_melanoleuca
ENSGAFG00000011582	smndc1	100	89.916	ENSACIG00000004819	smndc1	100	89.916	Amphilophus_citrinellus
ENSGAFG00000011582	smndc1	100	90.336	ENSAOCG00000017869	smndc1	100	90.336	Amphiprion_ocellaris
ENSGAFG00000011582	smndc1	100	90.336	ENSAPEG00000007752	smndc1	100	90.336	Amphiprion_percula
ENSGAFG00000011582	smndc1	100	91.176	ENSATEG00000006830	smndc1	100	91.176	Anabas_testudineus
ENSGAFG00000011582	smndc1	83	75.758	ENSAPLG00000004322	SMNDC1	100	75.758	Anas_platyrhynchos
ENSGAFG00000011582	smndc1	100	76.050	ENSACAG00000005983	SMNDC1	100	76.050	Anolis_carolinensis
ENSGAFG00000011582	smndc1	100	75.210	ENSANAG00000032875	SMNDC1	100	75.210	Aotus_nancymaae
ENSGAFG00000011582	smndc1	100	88.655	ENSACLG00000016360	smndc1	100	88.655	Astatotilapia_calliptera
ENSGAFG00000011582	smndc1	100	79.832	ENSAMXG00000020310	smndc1	100	79.832	Astyanax_mexicanus
ENSGAFG00000011582	smndc1	100	75.210	ENSBTAG00000000551	SMNDC1	100	75.210	Bos_taurus
ENSGAFG00000011582	smndc1	100	75.210	ENSCJAG00000018624	SMNDC1	100	75.210	Callithrix_jacchus
ENSGAFG00000011582	smndc1	100	75.210	ENSCAFG00000010720	SMNDC1	100	75.210	Canis_familiaris
ENSGAFG00000011582	smndc1	100	75.210	ENSCAFG00020011913	SMNDC1	100	75.210	Canis_lupus_dingo
ENSGAFG00000011582	smndc1	100	75.210	ENSCHIG00000010604	SMNDC1	100	75.210	Capra_hircus
ENSGAFG00000011582	smndc1	100	75.210	ENSTSYG00000026454	SMNDC1	100	75.210	Carlito_syrichta
ENSGAFG00000011582	smndc1	100	61.667	ENSCAPG00000009132	SMNDC1	100	71.642	Cavia_aperea
ENSGAFG00000011582	smndc1	100	75.210	ENSCPOG00000031666	SMNDC1	100	75.210	Cavia_porcellus
ENSGAFG00000011582	smndc1	100	75.210	ENSCCAG00000021793	SMNDC1	100	75.210	Cebus_capucinus
ENSGAFG00000011582	smndc1	100	74.790	ENSCATG00000035910	SMNDC1	100	74.790	Cercocebus_atys
ENSGAFG00000011582	smndc1	100	75.210	ENSCLAG00000002838	SMNDC1	100	75.210	Chinchilla_lanigera
ENSGAFG00000011582	smndc1	100	75.210	ENSCSAG00000005169	SMNDC1	100	75.210	Chlorocebus_sabaeus
ENSGAFG00000011582	smndc1	81	70.466	ENSCHOG00000002936	SMNDC1	100	70.466	Choloepus_hoffmanni
ENSGAFG00000011582	smndc1	100	75.630	ENSCPBG00000012837	SMNDC1	100	75.630	Chrysemys_picta_bellii
ENSGAFG00000011582	smndc1	100	75.210	ENSCANG00000031720	-	100	75.210	Colobus_angolensis_palliatus
ENSGAFG00000011582	smndc1	100	58.403	ENSCANG00000036994	-	100	58.403	Colobus_angolensis_palliatus
ENSGAFG00000011582	smndc1	100	68.908	ENSCANG00000034620	-	100	68.908	Colobus_angolensis_palliatus
ENSGAFG00000011582	smndc1	100	74.790	ENSCGRG00001012973	Smndc1	100	74.790	Cricetulus_griseus_chok1gshd
ENSGAFG00000011582	smndc1	100	74.790	ENSCGRG00000012396	Smndc1	100	74.790	Cricetulus_griseus_crigri
ENSGAFG00000011582	smndc1	100	85.294	ENSCSEG00000015621	smndc1	100	85.294	Cynoglossus_semilaevis
ENSGAFG00000011582	smndc1	100	92.437	ENSCVAG00000020432	smndc1	100	92.437	Cyprinodon_variegatus
ENSGAFG00000011582	smndc1	100	81.590	ENSDARG00000056235	smndc1	100	81.590	Danio_rerio
ENSGAFG00000011582	smndc1	100	75.210	ENSDNOG00000016387	SMNDC1	83	75.210	Dasypus_novemcinctus
ENSGAFG00000011582	smndc1	100	75.210	ENSDORG00000023715	Smndc1	100	75.210	Dipodomys_ordii
ENSGAFG00000011582	smndc1	95	40.562	FBgn0039977	CG17454	98	42.169	Drosophila_melanogaster
ENSGAFG00000011582	smndc1	100	67.220	ENSEBUG00000010929	smndc1	100	69.295	Eptatretus_burgeri
ENSGAFG00000011582	smndc1	100	75.210	ENSEASG00005014930	SMNDC1	100	75.210	Equus_asinus_asinus
ENSGAFG00000011582	smndc1	100	75.210	ENSECAG00000029973	SMNDC1	100	75.210	Equus_caballus
ENSGAFG00000011582	smndc1	83	54.040	ENSEEUG00000013407	-	100	54.040	Erinaceus_europaeus
ENSGAFG00000011582	smndc1	100	81.513	ENSELUG00000000227	smndc1	100	81.513	Esox_lucius
ENSGAFG00000011582	smndc1	100	75.210	ENSFCAG00000027353	SMNDC1	100	75.210	Felis_catus
ENSGAFG00000011582	smndc1	100	76.891	ENSFALG00000002306	SMNDC1	100	76.891	Ficedula_albicollis
ENSGAFG00000011582	smndc1	100	75.210	ENSFDAG00000006468	SMNDC1	100	75.210	Fukomys_damarensis
ENSGAFG00000011582	smndc1	100	93.697	ENSFHEG00000020150	smndc1	100	93.697	Fundulus_heteroclitus
ENSGAFG00000011582	smndc1	100	81.513	ENSGMOG00000016585	smndc1	100	81.513	Gadus_morhua
ENSGAFG00000011582	smndc1	100	76.891	ENSGALG00000008561	SMNDC1	100	76.891	Gallus_gallus
ENSGAFG00000011582	smndc1	100	87.815	ENSGACG00000009468	smndc1	100	87.815	Gasterosteus_aculeatus
ENSGAFG00000011582	smndc1	100	75.630	ENSGAGG00000024547	SMNDC1	100	75.630	Gopherus_agassizii
ENSGAFG00000011582	smndc1	100	75.210	ENSGGOG00000010071	SMNDC1	100	75.210	Gorilla_gorilla
ENSGAFG00000011582	smndc1	100	88.655	ENSHBUG00000017596	smndc1	100	88.655	Haplochromis_burtoni
ENSGAFG00000011582	smndc1	100	75.210	ENSHGLG00000013390	-	100	75.210	Heterocephalus_glaber_female
ENSGAFG00000011582	smndc1	100	53.878	ENSHGLG00000001157	-	100	53.878	Heterocephalus_glaber_female
ENSGAFG00000011582	smndc1	100	60.408	ENSHGLG00100004278	-	100	59.438	Heterocephalus_glaber_male
ENSGAFG00000011582	smndc1	100	75.210	ENSHGLG00100004814	-	100	75.210	Heterocephalus_glaber_male
ENSGAFG00000011582	smndc1	100	84.937	ENSHCOG00000000783	smndc1	100	84.937	Hippocampus_comes
ENSGAFG00000011582	smndc1	100	81.092	ENSIPUG00000004217	smndc1	100	81.092	Ictalurus_punctatus
ENSGAFG00000011582	smndc1	100	75.210	ENSSTOG00000006088	SMNDC1	100	75.210	Ictidomys_tridecemlineatus
ENSGAFG00000011582	smndc1	100	75.210	ENSJJAG00000019974	Smndc1	100	75.210	Jaculus_jaculus
ENSGAFG00000011582	smndc1	100	89.496	ENSKMAG00000020134	smndc1	100	89.496	Kryptolebias_marmoratus
ENSGAFG00000011582	smndc1	100	89.916	ENSLBEG00000004598	smndc1	100	89.916	Labrus_bergylta
ENSGAFG00000011582	smndc1	100	73.529	ENSLACG00000007784	SMNDC1	100	73.529	Latimeria_chalumnae
ENSGAFG00000011582	smndc1	100	82.353	ENSLOCG00000012355	smndc1	100	82.353	Lepisosteus_oculatus
ENSGAFG00000011582	smndc1	100	74.790	ENSLAFG00000014353	SMNDC1	100	74.790	Loxodonta_africana
ENSGAFG00000011582	smndc1	100	75.210	ENSMFAG00000002433	-	100	75.210	Macaca_fascicularis
ENSGAFG00000011582	smndc1	100	63.025	ENSMFAG00000038381	-	100	63.025	Macaca_fascicularis
ENSGAFG00000011582	smndc1	100	75.210	ENSMMUG00000007775	SMNDC1	100	75.210	Macaca_mulatta
ENSGAFG00000011582	smndc1	100	63.025	ENSMMUG00000045875	-	100	63.025	Macaca_mulatta
ENSGAFG00000011582	smndc1	100	65.966	ENSMNEG00000033853	-	100	65.966	Macaca_nemestrina
ENSGAFG00000011582	smndc1	100	75.210	ENSMNEG00000042963	-	100	75.210	Macaca_nemestrina
ENSGAFG00000011582	smndc1	100	70.711	ENSMLEG00000040236	SMNDC1	100	70.293	Mandrillus_leucophaeus
ENSGAFG00000011582	smndc1	89	85.446	ENSMAMG00000018233	smndc1	87	85.446	Mastacembelus_armatus
ENSGAFG00000011582	smndc1	100	88.655	ENSMZEG00005027510	smndc1	100	88.655	Maylandia_zebra
ENSGAFG00000011582	smndc1	84	76.000	ENSMGAG00000010777	SMNDC1	84	76.000	Meleagris_gallopavo
ENSGAFG00000011582	smndc1	99	61.603	ENSMAUG00000005459	-	93	61.603	Mesocricetus_auratus
ENSGAFG00000011582	smndc1	100	75.210	ENSMAUG00000012243	-	100	75.210	Mesocricetus_auratus
ENSGAFG00000011582	smndc1	100	65.126	ENSMICG00000031640	-	100	65.126	Microcebus_murinus
ENSGAFG00000011582	smndc1	100	74.790	ENSMICG00000027336	-	100	74.790	Microcebus_murinus
ENSGAFG00000011582	smndc1	100	74.790	ENSMOCG00000002458	Smndc1	100	74.790	Microtus_ochrogaster
ENSGAFG00000011582	smndc1	100	87.395	ENSMMOG00000008856	smndc1	100	87.395	Mola_mola
ENSGAFG00000011582	smndc1	100	75.210	ENSMODG00000010542	SMNDC1	100	75.210	Monodelphis_domestica
ENSGAFG00000011582	smndc1	100	86.975	ENSMALG00000017598	smndc1	100	86.975	Monopterus_albus
ENSGAFG00000011582	smndc1	100	75.210	MGP_CAROLIEiJ_G0023072	Smndc1	100	75.210	Mus_caroli
ENSGAFG00000011582	smndc1	100	75.210	ENSMUSG00000025024	Smndc1	100	75.210	Mus_musculus
ENSGAFG00000011582	smndc1	100	75.210	MGP_PahariEiJ_G0014560	Smndc1	100	75.210	Mus_pahari
ENSGAFG00000011582	smndc1	100	75.210	MGP_SPRETEiJ_G0023993	Smndc1	100	75.210	Mus_spretus
ENSGAFG00000011582	smndc1	100	75.210	ENSMPUG00000002089	SMNDC1	100	75.210	Mustela_putorius_furo
ENSGAFG00000011582	smndc1	100	75.210	ENSMLUG00000016007	SMNDC1	100	75.210	Myotis_lucifugus
ENSGAFG00000011582	smndc1	100	75.630	ENSNGAG00000006833	Smndc1	100	75.630	Nannospalax_galili
ENSGAFG00000011582	smndc1	100	89.076	ENSNBRG00000017089	smndc1	100	89.076	Neolamprologus_brichardi
ENSGAFG00000011582	smndc1	100	75.210	ENSNLEG00000015471	SMNDC1	100	75.210	Nomascus_leucogenys
ENSGAFG00000011582	smndc1	70	58.084	ENSMEUG00000010120	-	98	54.040	Notamacropus_eugenii
ENSGAFG00000011582	smndc1	100	75.210	ENSOPRG00000015348	SMNDC1	100	75.210	Ochotona_princeps
ENSGAFG00000011582	smndc1	100	55.230	ENSODEG00000007594	-	100	53.138	Octodon_degus
ENSGAFG00000011582	smndc1	100	89.076	ENSONIG00000000434	smndc1	100	89.076	Oreochromis_niloticus
ENSGAFG00000011582	smndc1	100	75.630	ENSOANG00000001598	SMNDC1	100	75.630	Ornithorhynchus_anatinus
ENSGAFG00000011582	smndc1	100	74.790	ENSOCUG00000008145	-	100	74.790	Oryctolagus_cuniculus
ENSGAFG00000011582	smndc1	100	54.622	ENSOCUG00000012274	-	100	57.143	Oryctolagus_cuniculus
ENSGAFG00000011582	smndc1	100	83.613	ENSORLG00000005934	smndc1	95	83.613	Oryzias_latipes
ENSGAFG00000011582	smndc1	100	83.613	ENSORLG00020008796	smndc1	95	83.613	Oryzias_latipes_hni
ENSGAFG00000011582	smndc1	100	83.613	ENSORLG00015013666	smndc1	100	83.613	Oryzias_latipes_hsok
ENSGAFG00000011582	smndc1	100	83.613	ENSOMEG00000007590	smndc1	100	83.613	Oryzias_melastigma
ENSGAFG00000011582	smndc1	100	75.210	ENSOGAG00000000571	SMNDC1	100	75.210	Otolemur_garnettii
ENSGAFG00000011582	smndc1	100	75.210	ENSOARG00000009500	SMNDC1	100	75.210	Ovis_aries
ENSGAFG00000011582	smndc1	100	75.210	ENSPPAG00000027815	SMNDC1	100	75.210	Pan_paniscus
ENSGAFG00000011582	smndc1	100	75.210	ENSPPRG00000013749	SMNDC1	100	75.210	Panthera_pardus
ENSGAFG00000011582	smndc1	100	75.210	ENSPTIG00000011451	SMNDC1	100	75.210	Panthera_tigris_altaica
ENSGAFG00000011582	smndc1	100	75.210	ENSPTRG00000002937	SMNDC1	100	75.210	Pan_troglodytes
ENSGAFG00000011582	smndc1	100	75.210	ENSPANG00000020805	-	100	75.210	Papio_anubis
ENSGAFG00000011582	smndc1	100	71.008	ENSPANG00000031346	-	100	71.008	Papio_anubis
ENSGAFG00000011582	smndc1	100	81.092	ENSPKIG00000017164	smndc1	100	81.092	Paramormyrops_kingsleyae
ENSGAFG00000011582	smndc1	100	75.630	ENSPSIG00000012257	SMNDC1	100	75.630	Pelodiscus_sinensis
ENSGAFG00000011582	smndc1	100	81.933	ENSPMGG00000015651	smndc1	100	81.933	Periophthalmus_magnuspinnatus
ENSGAFG00000011582	smndc1	100	75.210	ENSPEMG00000022058	Smndc1	100	75.210	Peromyscus_maniculatus_bairdii
ENSGAFG00000011582	smndc1	100	65.021	ENSPMAG00000007705	smndc1	100	65.021	Petromyzon_marinus
ENSGAFG00000011582	smndc1	100	75.210	ENSPCIG00000018419	SMNDC1	100	75.210	Phascolarctos_cinereus
ENSGAFG00000011582	smndc1	95	57.080	ENSPCIG00000009693	-	98	57.080	Phascolarctos_cinereus
ENSGAFG00000011582	smndc1	100	96.639	ENSPFOG00000017113	smndc1	100	96.639	Poecilia_formosa
ENSGAFG00000011582	smndc1	100	96.639	ENSPLAG00000010372	smndc1	100	96.639	Poecilia_latipinna
ENSGAFG00000011582	smndc1	100	96.639	ENSPMEG00000012288	smndc1	100	96.639	Poecilia_mexicana
ENSGAFG00000011582	smndc1	100	95.798	ENSPREG00000012279	smndc1	100	95.798	Poecilia_reticulata
ENSGAFG00000011582	smndc1	100	75.210	ENSPPYG00000002643	SMNDC1	100	75.210	Pongo_abelii
ENSGAFG00000011582	smndc1	81	70.466	ENSPCAG00000016183	SMNDC1	100	70.466	Procavia_capensis
ENSGAFG00000011582	smndc1	100	74.790	ENSPCOG00000024343	SMNDC1	100	74.790	Propithecus_coquereli
ENSGAFG00000011582	smndc1	100	59.664	ENSPVAG00000004368	SMNDC1	100	59.664	Pteropus_vampyrus
ENSGAFG00000011582	smndc1	83	87.374	ENSPNYG00000024093	smndc1	86	87.374	Pundamilia_nyererei
ENSGAFG00000011582	smndc1	100	78.151	ENSPNAG00000025285	smndc1	100	78.151	Pygocentrus_nattereri
ENSGAFG00000011582	smndc1	100	75.210	ENSRNOG00000014833	Smndc1	100	75.210	Rattus_norvegicus
ENSGAFG00000011582	smndc1	100	61.765	ENSRBIG00000032452	-	100	61.765	Rhinopithecus_bieti
ENSGAFG00000011582	smndc1	100	74.790	ENSRBIG00000000224	-	100	74.790	Rhinopithecus_bieti
ENSGAFG00000011582	smndc1	100	75.210	ENSRROG00000044992	-	100	75.210	Rhinopithecus_roxellana
ENSGAFG00000011582	smndc1	100	61.765	ENSRROG00000039125	-	100	61.765	Rhinopithecus_roxellana
ENSGAFG00000011582	smndc1	100	75.210	ENSSBOG00000026789	SMNDC1	100	75.210	Saimiri_boliviensis_boliviensis
ENSGAFG00000011582	smndc1	100	75.210	ENSSHAG00000015189	SMNDC1	100	75.210	Sarcophilus_harrisii
ENSGAFG00000011582	smndc1	100	79.832	ENSSFOG00015008311	smndc1	100	79.832	Scleropages_formosus
ENSGAFG00000011582	smndc1	100	89.916	ENSSMAG00000020118	smndc1	100	89.916	Scophthalmus_maximus
ENSGAFG00000011582	smndc1	100	89.076	ENSSDUG00000015330	smndc1	100	89.076	Seriola_dumerili
ENSGAFG00000011582	smndc1	100	88.655	ENSSLDG00000017325	smndc1	100	88.655	Seriola_lalandi_dorsalis
ENSGAFG00000011582	smndc1	100	75.210	ENSSARG00000006063	SMNDC1	100	75.210	Sorex_araneus
ENSGAFG00000011582	smndc1	100	76.471	ENSSPUG00000004574	SMNDC1	100	76.471	Sphenodon_punctatus
ENSGAFG00000011582	smndc1	100	89.076	ENSSPAG00000000338	smndc1	100	89.076	Stegastes_partitus
ENSGAFG00000011582	smndc1	100	75.210	ENSSSCG00000030507	SMNDC1	100	75.210	Sus_scrofa
ENSGAFG00000011582	smndc1	100	76.891	ENSTGUG00000010599	SMNDC1	100	76.891	Taeniopygia_guttata
ENSGAFG00000011582	smndc1	100	82.353	ENSTRUG00000023281	smndc1	100	82.353	Takifugu_rubripes
ENSGAFG00000011582	smndc1	100	82.773	ENSTNIG00000013331	smndc1	100	82.773	Tetraodon_nigroviridis
ENSGAFG00000011582	smndc1	100	75.210	ENSTBEG00000014337	SMNDC1	100	75.210	Tupaia_belangeri
ENSGAFG00000011582	smndc1	100	75.210	ENSUAMG00000008142	SMNDC1	100	75.210	Ursus_americanus
ENSGAFG00000011582	smndc1	100	75.210	ENSUMAG00000023722	SMNDC1	100	75.210	Ursus_maritimus
ENSGAFG00000011582	smndc1	83	74.242	ENSVPAG00000003402	SMNDC1	100	74.242	Vicugna_pacos
ENSGAFG00000011582	smndc1	100	75.210	ENSVVUG00000007820	SMNDC1	100	75.210	Vulpes_vulpes
ENSGAFG00000011582	smndc1	57	64.706	ENSXETG00000015415	SMNDC1	96	64.706	Xenopus_tropicalis
ENSGAFG00000011582	smndc1	100	95.798	ENSXCOG00000009159	smndc1	100	95.798	Xiphophorus_couchianus
ENSGAFG00000011582	smndc1	100	96.639	ENSXMAG00000012755	smndc1	100	96.639	Xiphophorus_maculatus