EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000012422 (Gene tree)
Gene ID: -
Gene Symbol: prpf38a
Alias: fa04h11|fc83e08|wu:fa04h11|wu:fc83e08|zgc:92059
Full Name: pre-mRNA processing factor 38A
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 6536 bases
Position: chrNHOQ01001911.1:6352740-6359275
Accession: ZDB-GENE-040801-225
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000018358	PRP38	PF03371.15	2.8e-63	1	1
ENSGAFP00000018364	PRP38	PF03371.15	4.5e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000018534	-	2823	-	ENSGAFP00000018358	309 (aa)	-	UPI000293A947
ENSGAFT00000018540	-	1496	-	ENSGAFP00000018364	389 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000012422's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000012422's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000012422	prpf38a	100	82.428	ENSG00000134748	PRPF38A	71	90.498	Homo_sapiens
ENSGAFG00000012422	prpf38a	100	96.440	ENSAPOG00000011652	prpf38a	100	96.440	Acanthochromis_polyacanthus
ENSGAFG00000012422	prpf38a	100	82.428	ENSAMEG00000009319	PRPF38A	71	90.498	Ailuropoda_melanoleuca
ENSGAFG00000012422	prpf38a	72	92.760	ENSACIG00000012292	prpf38a	72	92.760	Amphilophus_citrinellus
ENSGAFG00000012422	prpf38a	100	96.440	ENSAOCG00000018004	prpf38a	100	96.440	Amphiprion_ocellaris
ENSGAFG00000012422	prpf38a	100	96.440	ENSAPEG00000021414	prpf38a	100	96.440	Amphiprion_percula
ENSGAFG00000012422	prpf38a	72	94.570	ENSATEG00000004608	prpf38a	72	94.570	Anabas_testudineus
ENSGAFG00000012422	prpf38a	79	79.032	ENSAPLG00000005827	PRPF38A	63	88.462	Anas_platyrhynchos
ENSGAFG00000012422	prpf38a	100	80.831	ENSACAG00000008249	PRPF38A	71	88.235	Anolis_carolinensis
ENSGAFG00000012422	prpf38a	100	82.428	ENSANAG00000027839	PRPF38A	71	90.498	Aotus_nancymaae
ENSGAFG00000012422	prpf38a	100	60.952	ENSANAG00000029204	-	70	57.778	Aotus_nancymaae
ENSGAFG00000012422	prpf38a	72	94.118	ENSACLG00000021595	prpf38a	74	94.118	Astatotilapia_calliptera
ENSGAFG00000012422	prpf38a	100	83.706	ENSAMXG00000029274	prpf38a	71	93.665	Astyanax_mexicanus
ENSGAFG00000012422	prpf38a	100	82.428	ENSBTAG00000002720	PRPF38A	75	90.498	Bos_taurus
ENSGAFG00000012422	prpf38a	63	63.590	WBGene00008380	prp-38	59	65.426	Caenorhabditis_elegans
ENSGAFG00000012422	prpf38a	100	82.428	ENSCJAG00000021594	PRPF38A	74	90.498	Callithrix_jacchus
ENSGAFG00000012422	prpf38a	100	82.428	ENSCAFG00000003740	PRPF38A	71	90.498	Canis_familiaris
ENSGAFG00000012422	prpf38a	100	82.428	ENSCAFG00020010939	PRPF38A	71	90.498	Canis_lupus_dingo
ENSGAFG00000012422	prpf38a	100	82.428	ENSCHIG00000024730	PRPF38A	71	90.498	Capra_hircus
ENSGAFG00000012422	prpf38a	86	78.889	ENSTSYG00000031994	-	63	87.640	Carlito_syrichta
ENSGAFG00000012422	prpf38a	100	82.428	ENSTSYG00000009868	-	71	90.498	Carlito_syrichta
ENSGAFG00000012422	prpf38a	100	84.244	ENSCPOG00000005079	PRPF38A	71	90.498	Cavia_porcellus
ENSGAFG00000012422	prpf38a	75	89.610	ENSCCAG00000026502	PRPF38A	71	90.498	Cebus_capucinus
ENSGAFG00000012422	prpf38a	93	55.363	ENSCATG00000044190	-	57	57.447	Cercocebus_atys
ENSGAFG00000012422	prpf38a	100	82.428	ENSCATG00000032296	PRPF38A	71	90.498	Cercocebus_atys
ENSGAFG00000012422	prpf38a	100	82.428	ENSCLAG00000005816	PRPF38A	71	90.498	Chinchilla_lanigera
ENSGAFG00000012422	prpf38a	100	82.109	ENSCPBG00000014791	PRPF38A	71	90.045	Chrysemys_picta_bellii
ENSGAFG00000012422	prpf38a	75	68.398	ENSCSAVG00000009580	-	62	76.064	Ciona_savignyi
ENSGAFG00000012422	prpf38a	75	89.610	ENSCANG00000032608	PRPF38A	74	90.498	Colobus_angolensis_palliatus
ENSGAFG00000012422	prpf38a	100	82.428	ENSCGRG00001018502	-	71	90.498	Cricetulus_griseus_chok1gshd
ENSGAFG00000012422	prpf38a	84	72.797	ENSCGRG00001002557	-	74	76.471	Cricetulus_griseus_chok1gshd
ENSGAFG00000012422	prpf38a	100	82.428	ENSCGRG00000014868	Prpf38a	71	90.498	Cricetulus_griseus_crigri
ENSGAFG00000012422	prpf38a	72	93.665	ENSCSEG00000001269	prpf38a	76	93.665	Cynoglossus_semilaevis
ENSGAFG00000012422	prpf38a	100	99.029	ENSCVAG00000012305	prpf38a	100	99.029	Cyprinodon_variegatus
ENSGAFG00000012422	prpf38a	100	83.067	ENSDARG00000039213	prpf38a	71	93.213	Danio_rerio
ENSGAFG00000012422	prpf38a	100	82.428	ENSDNOG00000042326	PRPF38A	72	90.498	Dasypus_novemcinctus
ENSGAFG00000012422	prpf38a	85	97.917	ENSDORG00000023857	-	80	97.917	Dipodomys_ordii
ENSGAFG00000012422	prpf38a	84	75.665	ENSDORG00000023691	-	75	82.569	Dipodomys_ordii
ENSGAFG00000012422	prpf38a	84	75.665	ENSDORG00000025371	-	75	82.569	Dipodomys_ordii
ENSGAFG00000012422	prpf38a	65	73.632	FBgn0050342	Prp38	57	76.064	Drosophila_melanogaster
ENSGAFG00000012422	prpf38a	77	81.590	ENSEBUG00000012588	prpf38a	71	81.614	Eptatretus_burgeri
ENSGAFG00000012422	prpf38a	100	82.428	ENSEASG00005014427	PRPF38A	71	90.498	Equus_asinus_asinus
ENSGAFG00000012422	prpf38a	100	82.428	ENSECAG00000022628	PRPF38A	71	90.498	Equus_caballus
ENSGAFG00000012422	prpf38a	72	92.760	ENSELUG00000021094	prpf38a	75	92.760	Esox_lucius
ENSGAFG00000012422	prpf38a	100	82.428	ENSFCAG00000002518	PRPF38A	71	90.498	Felis_catus
ENSGAFG00000012422	prpf38a	87	80.147	ENSFALG00000005598	-	66	88.889	Ficedula_albicollis
ENSGAFG00000012422	prpf38a	99	77.419	ENSFALG00000003612	-	73	85.780	Ficedula_albicollis
ENSGAFG00000012422	prpf38a	100	83.923	ENSFDAG00000011287	PRPF38A	72	90.498	Fukomys_damarensis
ENSGAFG00000012422	prpf38a	95	98.305	ENSFHEG00000014317	prpf38a	100	98.305	Fundulus_heteroclitus
ENSGAFG00000012422	prpf38a	54	98.193	ENSGMOG00000011384	prpf38a	54	98.193	Gadus_morhua
ENSGAFG00000012422	prpf38a	100	82.748	ENSGALG00000010627	PRPF38A	71	90.950	Gallus_gallus
ENSGAFG00000012422	prpf38a	54	92.941	ENSGACG00000000182	-	100	92.941	Gasterosteus_aculeatus
ENSGAFG00000012422	prpf38a	100	94.534	ENSGACG00000005423	prpf38a	100	94.534	Gasterosteus_aculeatus
ENSGAFG00000012422	prpf38a	100	82.109	ENSGAGG00000020547	PRPF38A	71	90.045	Gopherus_agassizii
ENSGAFG00000012422	prpf38a	100	82.428	ENSGGOG00000003940	PRPF38A	71	90.498	Gorilla_gorilla
ENSGAFG00000012422	prpf38a	66	96.059	ENSHBUG00000020572	prpf38a	86	96.059	Haplochromis_burtoni
ENSGAFG00000012422	prpf38a	100	74.920	ENSHGLG00000007918	-	71	78.281	Heterocephalus_glaber_female
ENSGAFG00000012422	prpf38a	100	82.428	ENSHGLG00000000475	PRPF38A	71	90.498	Heterocephalus_glaber_female
ENSGAFG00000012422	prpf38a	100	82.428	ENSHGLG00100008935	PRPF38A	71	90.498	Heterocephalus_glaber_male
ENSGAFG00000012422	prpf38a	100	74.920	ENSHGLG00100003928	-	71	78.281	Heterocephalus_glaber_male
ENSGAFG00000012422	prpf38a	59	93.956	ENSHCOG00000020781	prpf38a	59	94.149	Hippocampus_comes
ENSGAFG00000012422	prpf38a	90	80.556	ENSIPUG00000005757	prpf38a	71	91.892	Ictalurus_punctatus
ENSGAFG00000012422	prpf38a	100	82.428	ENSSTOG00000015610	PRPF38A	71	90.498	Ictidomys_tridecemlineatus
ENSGAFG00000012422	prpf38a	100	81.789	ENSJJAG00000015811	Prpf38a	71	89.593	Jaculus_jaculus
ENSGAFG00000012422	prpf38a	100	97.087	ENSKMAG00000006588	prpf38a	100	97.087	Kryptolebias_marmoratus
ENSGAFG00000012422	prpf38a	100	93.204	ENSLBEG00000020585	prpf38a	72	93.213	Labrus_bergylta
ENSGAFG00000012422	prpf38a	100	82.428	ENSLACG00000011495	PRPF38A	71	89.593	Latimeria_chalumnae
ENSGAFG00000012422	prpf38a	100	91.935	ENSLOCG00000006262	prpf38a	72	90.991	Lepisosteus_oculatus
ENSGAFG00000012422	prpf38a	100	82.428	ENSLAFG00000025862	PRPF38A	71	90.498	Loxodonta_africana
ENSGAFG00000012422	prpf38a	100	82.428	ENSMFAG00000039449	PRPF38A	74	90.498	Macaca_fascicularis
ENSGAFG00000012422	prpf38a	87	79.779	ENSMMUG00000014333	PRPF38A	65	87.845	Macaca_mulatta
ENSGAFG00000012422	prpf38a	93	54.671	ENSMNEG00000040242	-	65	59.420	Macaca_nemestrina
ENSGAFG00000012422	prpf38a	100	82.428	ENSMNEG00000031221	PRPF38A	71	90.498	Macaca_nemestrina
ENSGAFG00000012422	prpf38a	100	82.428	ENSMLEG00000041105	PRPF38A	71	90.498	Mandrillus_leucophaeus
ENSGAFG00000012422	prpf38a	100	96.440	ENSMAMG00000015431	prpf38a	100	96.440	Mastacembelus_armatus
ENSGAFG00000012422	prpf38a	72	94.118	ENSMZEG00005017838	prpf38a	72	94.118	Maylandia_zebra
ENSGAFG00000012422	prpf38a	75	90.043	ENSMGAG00000011176	PRPF38A	74	90.950	Meleagris_gallopavo
ENSGAFG00000012422	prpf38a	85	84.848	ENSMAUG00000018029	-	84	85.973	Mesocricetus_auratus
ENSGAFG00000012422	prpf38a	100	82.428	ENSMICG00000014193	PRPF38A	71	90.498	Microcebus_murinus
ENSGAFG00000012422	prpf38a	100	82.428	ENSMOCG00000013080	Prpf38a	71	90.498	Microtus_ochrogaster
ENSGAFG00000012422	prpf38a	100	87.138	ENSMMOG00000016972	prpf38a	85	88.550	Mola_mola
ENSGAFG00000012422	prpf38a	100	80.255	ENSMODG00000000644	PRPF38A	71	87.387	Monodelphis_domestica
ENSGAFG00000012422	prpf38a	100	96.117	ENSMALG00000019363	prpf38a	97	96.117	Monopterus_albus
ENSGAFG00000012422	prpf38a	100	82.109	MGP_CAROLIEiJ_G0026269	Prpf38a	71	90.045	Mus_caroli
ENSGAFG00000012422	prpf38a	100	82.109	ENSMUSG00000063800	Prpf38a	71	90.045	Mus_musculus
ENSGAFG00000012422	prpf38a	100	82.109	MGP_PahariEiJ_G0028602	Prpf38a	71	90.045	Mus_pahari
ENSGAFG00000012422	prpf38a	100	81.789	MGP_SPRETEiJ_G0027238	Prpf38a	93	94.149	Mus_spretus
ENSGAFG00000012422	prpf38a	100	82.428	ENSMPUG00000006896	PRPF38A	71	90.498	Mustela_putorius_furo
ENSGAFG00000012422	prpf38a	100	84.566	ENSNGAG00000011884	Prpf38a	72	90.498	Nannospalax_galili
ENSGAFG00000012422	prpf38a	72	92.760	ENSNBRG00000004013	prpf38a	71	92.760	Neolamprologus_brichardi
ENSGAFG00000012422	prpf38a	93	57.388	ENSNLEG00000033398	-	60	52.511	Nomascus_leucogenys
ENSGAFG00000012422	prpf38a	97	63.816	ENSNLEG00000012592	-	67	59.729	Nomascus_leucogenys
ENSGAFG00000012422	prpf38a	93	81.379	ENSNLEG00000017999	PRPF38A	63	89.899	Nomascus_leucogenys
ENSGAFG00000012422	prpf38a	100	78.914	ENSMEUG00000003860	PRPF38A	71	85.520	Notamacropus_eugenii
ENSGAFG00000012422	prpf38a	74	89.912	ENSOPRG00000008985	PRPF38A	92	90.498	Ochotona_princeps
ENSGAFG00000012422	prpf38a	100	82.428	ENSODEG00000005869	PRPF38A	71	90.498	Octodon_degus
ENSGAFG00000012422	prpf38a	72	93.665	ENSONIG00000007816	prpf38a	72	93.665	Oreochromis_niloticus
ENSGAFG00000012422	prpf38a	75	45.494	ENSOANG00000009541	-	71	44.395	Ornithorhynchus_anatinus
ENSGAFG00000012422	prpf38a	100	82.428	ENSOCUG00000000963	PRPF38A	71	90.498	Oryctolagus_cuniculus
ENSGAFG00000012422	prpf38a	100	96.117	ENSORLG00000013485	prpf38a	100	96.117	Oryzias_latipes
ENSGAFG00000012422	prpf38a	100	96.117	ENSORLG00020002130	prpf38a	100	96.117	Oryzias_latipes_hni
ENSGAFG00000012422	prpf38a	100	95.793	ENSORLG00015021393	prpf38a	95	93.548	Oryzias_latipes_hsok
ENSGAFG00000012422	prpf38a	100	95.793	ENSOMEG00000016333	prpf38a	100	95.793	Oryzias_melastigma
ENSGAFG00000012422	prpf38a	100	82.428	ENSOGAG00000005423	PRPF38A	71	90.498	Otolemur_garnettii
ENSGAFG00000012422	prpf38a	100	82.428	ENSOARG00000005373	PRPF38A	71	90.498	Ovis_aries
ENSGAFG00000012422	prpf38a	100	82.428	ENSPPAG00000030905	PRPF38A	71	90.498	Pan_paniscus
ENSGAFG00000012422	prpf38a	93	69.759	ENSPPAG00000033867	-	68	70.588	Pan_paniscus
ENSGAFG00000012422	prpf38a	100	82.428	ENSPPRG00000013268	PRPF38A	71	90.498	Panthera_pardus
ENSGAFG00000012422	prpf38a	100	82.428	ENSPTIG00000015419	PRPF38A	71	90.498	Panthera_tigris_altaica
ENSGAFG00000012422	prpf38a	100	82.428	ENSPTRG00000000739	PRPF38A	74	90.498	Pan_troglodytes
ENSGAFG00000012422	prpf38a	100	82.428	ENSPANG00000015483	PRPF38A	71	90.498	Papio_anubis
ENSGAFG00000012422	prpf38a	100	93.204	ENSPKIG00000011439	prpf38a	72	92.308	Paramormyrops_kingsleyae
ENSGAFG00000012422	prpf38a	100	81.789	ENSPSIG00000017487	PRPF38A	71	89.593	Pelodiscus_sinensis
ENSGAFG00000012422	prpf38a	58	93.363	ENSPMGG00000021352	prpf38a	78	93.363	Periophthalmus_magnuspinnatus
ENSGAFG00000012422	prpf38a	100	80.952	ENSPEMG00000011212	-	70	83.408	Peromyscus_maniculatus_bairdii
ENSGAFG00000012422	prpf38a	100	82.428	ENSPEMG00000023277	-	71	90.498	Peromyscus_maniculatus_bairdii
ENSGAFG00000012422	prpf38a	100	79.936	ENSPCIG00000022369	-	71	86.937	Phascolarctos_cinereus
ENSGAFG00000012422	prpf38a	100	100.000	ENSPFOG00000004248	prpf38a	100	100.000	Poecilia_formosa
ENSGAFG00000012422	prpf38a	100	100.000	ENSPLAG00000010328	prpf38a	100	100.000	Poecilia_latipinna
ENSGAFG00000012422	prpf38a	100	100.000	ENSPMEG00000011804	prpf38a	100	100.000	Poecilia_mexicana
ENSGAFG00000012422	prpf38a	94	81.457	ENSPREG00000002835	prpf38a	58	99.468	Poecilia_reticulata
ENSGAFG00000012422	prpf38a	100	74.528	ENSPPYG00000001348	PRPF38A	71	79.204	Pongo_abelii
ENSGAFG00000012422	prpf38a	100	82.109	ENSPCAG00000013328	PRPF38A	71	90.045	Procavia_capensis
ENSGAFG00000012422	prpf38a	100	67.638	ENSPCOG00000020709	-	64	80.319	Propithecus_coquereli
ENSGAFG00000012422	prpf38a	100	82.428	ENSPCOG00000016387	-	71	90.498	Propithecus_coquereli
ENSGAFG00000012422	prpf38a	100	82.428	ENSPVAG00000009803	PRPF38A	71	90.498	Pteropus_vampyrus
ENSGAFG00000012422	prpf38a	72	94.118	ENSPNYG00000005571	prpf38a	72	94.118	Pundamilia_nyererei
ENSGAFG00000012422	prpf38a	100	83.067	ENSPNAG00000010399	prpf38a	71	92.760	Pygocentrus_nattereri
ENSGAFG00000012422	prpf38a	100	82.748	ENSRNOG00000009451	Prpf38a	71	90.950	Rattus_norvegicus
ENSGAFG00000012422	prpf38a	100	82.428	ENSRBIG00000036442	PRPF38A	74	90.498	Rhinopithecus_bieti
ENSGAFG00000012422	prpf38a	100	82.428	ENSRROG00000032788	PRPF38A	71	90.498	Rhinopithecus_roxellana
ENSGAFG00000012422	prpf38a	98	71.475	ENSRROG00000040003	-	72	74.208	Rhinopithecus_roxellana
ENSGAFG00000012422	prpf38a	100	82.428	ENSSBOG00000019515	PRPF38A	71	90.498	Saimiri_boliviensis_boliviensis
ENSGAFG00000012422	prpf38a	86	77.206	ENSSHAG00000006906	-	66	84.444	Sarcophilus_harrisii
ENSGAFG00000012422	prpf38a	96	66.555	ENSSHAG00000006029	-	74	76.923	Sarcophilus_harrisii
ENSGAFG00000012422	prpf38a	100	92.258	ENSSFOG00015013572	prpf38a	72	89.189	Scleropages_formosus
ENSGAFG00000012422	prpf38a	72	95.023	ENSSMAG00000015379	prpf38a	72	95.023	Scophthalmus_maximus
ENSGAFG00000012422	prpf38a	100	96.440	ENSSDUG00000001324	prpf38a	100	96.440	Seriola_dumerili
ENSGAFG00000012422	prpf38a	100	96.440	ENSSLDG00000014803	prpf38a	100	96.440	Seriola_lalandi_dorsalis
ENSGAFG00000012422	prpf38a	100	65.495	ENSSARG00000014458	PRPF38A	71	66.516	Sorex_araneus
ENSGAFG00000012422	prpf38a	100	80.831	ENSSPUG00000013259	PRPF38A	71	88.235	Sphenodon_punctatus
ENSGAFG00000012422	prpf38a	72	77.376	ENSSPAG00000010449	prpf38a	68	77.376	Stegastes_partitus
ENSGAFG00000012422	prpf38a	100	82.428	ENSSSCG00000028288	PRPF38A	71	90.498	Sus_scrofa
ENSGAFG00000012422	prpf38a	100	78.914	ENSTGUG00000008995	PRPF38A	71	85.520	Taeniopygia_guttata
ENSGAFG00000012422	prpf38a	72	94.118	ENSTRUG00000003374	prpf38a	68	94.118	Takifugu_rubripes
ENSGAFG00000012422	prpf38a	100	93.569	ENSTNIG00000005533	prpf38a	100	93.569	Tetraodon_nigroviridis
ENSGAFG00000012422	prpf38a	100	81.789	ENSTBEG00000000725	PRPF38A	71	90.498	Tupaia_belangeri
ENSGAFG00000012422	prpf38a	100	82.428	ENSTTRG00000016139	PRPF38A	71	90.498	Tursiops_truncatus
ENSGAFG00000012422	prpf38a	100	82.428	ENSUAMG00000000625	PRPF38A	71	90.498	Ursus_americanus
ENSGAFG00000012422	prpf38a	100	82.428	ENSUMAG00000022674	PRPF38A	71	90.498	Ursus_maritimus
ENSGAFG00000012422	prpf38a	75	89.177	ENSVPAG00000000907	PRPF38A	71	90.045	Vicugna_pacos
ENSGAFG00000012422	prpf38a	100	82.428	ENSVVUG00000004475	PRPF38A	71	90.498	Vulpes_vulpes
ENSGAFG00000012422	prpf38a	100	81.210	ENSXETG00000008060	prpf38a	92	78.125	Xenopus_tropicalis
ENSGAFG00000012422	prpf38a	100	95.498	ENSXCOG00000007393	prpf38a	100	95.498	Xiphophorus_couchianus
ENSGAFG00000012422	prpf38a	100	100.000	ENSXMAG00000026143	prpf38a	100	100.000	Xiphophorus_maculatus