EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000012425 (Gene tree)
Gene ID: -
Gene Symbol: mtrex
Alias: julie|mtrex|skiv2l2|wu:fd11a05|zgc:63838
Full Name: Mtr4 exosome RNA helicase
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 16527 bases
Position: chrNHOQ01001156.1:11566562-11583088
Accession: ZDB-GENE-040426-2854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000018410	rRNA_proc-arch	PF13234.6	3.7e-89	1	1
ENSGAFP00000018383	rRNA_proc-arch	PF13234.6	4e-89	1	1
ENSGAFP00000018427	rRNA_proc-arch	PF13234.6	1e-88	1	1
ENSGAFP00000018427	DEAD	PF00270.29	9e-17	1	1
ENSGAFP00000018410	DEAD	PF00270.29	9.2e-17	1	1
ENSGAFP00000018383	DEAD	PF00270.29	9.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000018560	-	3552	-	ENSGAFP00000018383	1035 (aa)	-	-
ENSGAFT00000018605	-	2961	-	ENSGAFP00000018427	986 (aa)	-	-
ENSGAFT00000018587	-	3450	-	ENSGAFP00000018410	1001 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000012425's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000012425's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000012425	mtrex	94	36.223	ENSGAFG00000002382	skiv2l	76	37.219

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000012425	mtrex	98	87.293	ENSG00000039123	MTREX	100	83.413	Homo_sapiens
ENSGAFG00000012425	mtrex	100	93.732	ENSAPOG00000007814	mtrex	100	93.732	Acanthochromis_polyacanthus
ENSGAFG00000012425	mtrex	98	87.307	ENSAMEG00000013856	MTREX	100	83.524	Ailuropoda_melanoleuca
ENSGAFG00000012425	mtrex	100	93.675	ENSACIG00000015117	mtrex	100	93.474	Amphilophus_citrinellus
ENSGAFG00000012425	mtrex	100	93.732	ENSAOCG00000011884	mtrex	100	93.732	Amphiprion_ocellaris
ENSGAFG00000012425	mtrex	100	93.635	ENSAPEG00000019384	mtrex	100	93.635	Amphiprion_percula
ENSGAFG00000012425	mtrex	100	93.250	ENSATEG00000015117	mtrex	100	93.250	Anabas_testudineus
ENSGAFG00000012425	mtrex	97	87.630	ENSAPLG00000009694	MTREX	100	85.020	Anas_platyrhynchos
ENSGAFG00000012425	mtrex	100	84.306	ENSACAG00000015200	MTREX	96	84.306	Anolis_carolinensis
ENSGAFG00000012425	mtrex	98	87.500	ENSANAG00000023095	MTREX	100	83.889	Aotus_nancymaae
ENSGAFG00000012425	mtrex	100	93.539	ENSACLG00000001921	mtrex	100	93.539	Astatotilapia_calliptera
ENSGAFG00000012425	mtrex	95	86.120	ENSAMXG00000018751	mtrex	99	85.714	Astyanax_mexicanus
ENSGAFG00000012425	mtrex	100	84.130	ENSBTAG00000010518	MTREX	100	83.889	Bos_taurus
ENSGAFG00000012425	mtrex	95	53.994	WBGene00012342	mtr-4	91	53.994	Caenorhabditis_elegans
ENSGAFG00000012425	mtrex	98	87.500	ENSCJAG00000001773	MTREX	100	83.033	Callithrix_jacchus
ENSGAFG00000012425	mtrex	98	87.500	ENSCAFG00000006818	MTREX	100	83.699	Canis_familiaris
ENSGAFG00000012425	mtrex	98	87.500	ENSCAFG00020024352	MTREX	100	83.699	Canis_lupus_dingo
ENSGAFG00000012425	mtrex	98	87.293	ENSCHIG00000024413	MTREX	100	83.508	Capra_hircus
ENSGAFG00000012425	mtrex	93	85.278	ENSTSYG00000007389	MTREX	100	85.278	Carlito_syrichta
ENSGAFG00000012425	mtrex	88	76.376	ENSCAPG00000008696	MTREX	92	76.376	Cavia_aperea
ENSGAFG00000012425	mtrex	100	83.714	ENSCPOG00000009797	MTREX	100	83.714	Cavia_porcellus
ENSGAFG00000012425	mtrex	98	87.500	ENSCCAG00000014177	MTREX	100	83.889	Cebus_capucinus
ENSGAFG00000012425	mtrex	98	87.397	ENSCATG00000042153	MTREX	100	83.714	Cercocebus_atys
ENSGAFG00000012425	mtrex	100	83.810	ENSCLAG00000006622	MTREX	100	83.810	Chinchilla_lanigera
ENSGAFG00000012425	mtrex	98	83.316	ENSCSAG00000016445	MTREX	100	79.867	Chlorocebus_sabaeus
ENSGAFG00000012425	mtrex	69	95.833	ENSCHOG00000010936	-	70	95.833	Choloepus_hoffmanni
ENSGAFG00000012425	mtrex	100	84.645	ENSCPBG00000026551	MTREX	94	84.726	Chrysemys_picta_bellii
ENSGAFG00000012425	mtrex	99	65.772	ENSCING00000003239	-	99	65.774	Ciona_intestinalis
ENSGAFG00000012425	mtrex	99	67.141	ENSCSAVG00000009304	-	100	69.124	Ciona_savignyi
ENSGAFG00000012425	mtrex	98	87.397	ENSCANG00000035770	MTREX	100	83.619	Colobus_angolensis_palliatus
ENSGAFG00000012425	mtrex	100	83.492	ENSCGRG00001024680	Mtrex	100	83.954	Cricetulus_griseus_chok1gshd
ENSGAFG00000012425	mtrex	100	83.492	ENSCGRG00000000307	Mtrex	100	83.954	Cricetulus_griseus_crigri
ENSGAFG00000012425	mtrex	100	91.128	ENSCSEG00000018621	mtrex	98	91.128	Cynoglossus_semilaevis
ENSGAFG00000012425	mtrex	100	95.656	ENSCVAG00000004556	mtrex	100	95.656	Cyprinodon_variegatus
ENSGAFG00000012425	mtrex	100	85.921	ENSDARG00000013457	mtrex	100	85.728	Danio_rerio
ENSGAFG00000012425	mtrex	100	83.840	ENSDNOG00000015375	MTREX	100	83.840	Dasypus_novemcinctus
ENSGAFG00000012425	mtrex	98	87.397	ENSDORG00000006782	Mtrex	100	83.889	Dipodomys_ordii
ENSGAFG00000012425	mtrex	95	66.667	FBgn0001986	Mtr4	99	62.040	Drosophila_melanogaster
ENSGAFG00000012425	mtrex	90	68.082	ENSETEG00000000727	MTREX	90	67.804	Echinops_telfairi
ENSGAFG00000012425	mtrex	97	76.458	ENSEBUG00000012869	mtrex	99	72.596	Eptatretus_burgeri
ENSGAFG00000012425	mtrex	98	87.293	ENSEASG00005013270	MTREX	100	83.794	Equus_asinus_asinus
ENSGAFG00000012425	mtrex	98	87.397	ENSECAG00000023723	MTREX	100	89.352	Equus_caballus
ENSGAFG00000012425	mtrex	96	79.390	ENSEEUG00000000527	MTREX	100	76.357	Erinaceus_europaeus
ENSGAFG00000012425	mtrex	100	88.170	ENSELUG00000004898	mtrex	100	90.871	Esox_lucius
ENSGAFG00000012425	mtrex	98	87.500	ENSFCAG00000010575	MTREX	100	83.889	Felis_catus
ENSGAFG00000012425	mtrex	97	86.486	ENSFALG00000010850	MTREX	100	82.885	Ficedula_albicollis
ENSGAFG00000012425	mtrex	100	83.429	ENSFDAG00000011199	MTREX	100	83.429	Fukomys_damarensis
ENSGAFG00000012425	mtrex	100	95.753	ENSFHEG00000023014	mtrex	100	92.982	Fundulus_heteroclitus
ENSGAFG00000012425	mtrex	100	85.521	ENSGMOG00000014702	mtrex	100	85.521	Gadus_morhua
ENSGAFG00000012425	mtrex	100	84.246	ENSGALG00000014709	MTREX	86	84.246	Gallus_gallus
ENSGAFG00000012425	mtrex	100	86.500	ENSGACG00000016260	mtrex	97	90.753	Gasterosteus_aculeatus
ENSGAFG00000012425	mtrex	100	84.534	ENSGAGG00000020036	MTREX	100	84.534	Gopherus_agassizii
ENSGAFG00000012425	mtrex	98	87.397	ENSGGOG00000001867	MTREX	100	83.508	Gorilla_gorilla
ENSGAFG00000012425	mtrex	100	93.539	ENSHBUG00000006229	mtrex	100	93.539	Haplochromis_burtoni
ENSGAFG00000012425	mtrex	98	87.190	ENSHGLG00000019445	SKIV2L2	100	83.714	Heterocephalus_glaber_female
ENSGAFG00000012425	mtrex	98	87.190	ENSHGLG00100011833	SKIV2L2	100	83.714	Heterocephalus_glaber_male
ENSGAFG00000012425	mtrex	96	89.806	ENSHCOG00000019995	mtrex	100	89.806	Hippocampus_comes
ENSGAFG00000012425	mtrex	100	86.031	ENSIPUG00000024348	skiv2l2	100	85.934	Ictalurus_punctatus
ENSGAFG00000012425	mtrex	100	83.588	ENSSTOG00000010802	MTREX	100	83.699	Ictidomys_tridecemlineatus
ENSGAFG00000012425	mtrex	100	79.059	ENSJJAG00000020975	Mtrex	100	79.291	Jaculus_jaculus
ENSGAFG00000012425	mtrex	100	93.822	ENSKMAG00000012642	mtrex	100	93.822	Kryptolebias_marmoratus
ENSGAFG00000012425	mtrex	100	92.478	ENSLBEG00000019367	mtrex	100	92.478	Labrus_bergylta
ENSGAFG00000012425	mtrex	100	84.682	ENSLACG00000009075	MTREX	100	84.586	Latimeria_chalumnae
ENSGAFG00000012425	mtrex	100	86.442	ENSLOCG00000010186	mtrex	100	86.346	Lepisosteus_oculatus
ENSGAFG00000012425	mtrex	98	85.124	ENSLAFG00000010497	MTREX	100	81.679	Loxodonta_africana
ENSGAFG00000012425	mtrex	98	87.397	ENSMFAG00000031610	MTREX	100	83.714	Macaca_fascicularis
ENSGAFG00000012425	mtrex	99	86.018	ENSMMUG00000010379	MTREX	100	83.555	Macaca_mulatta
ENSGAFG00000012425	mtrex	98	87.397	ENSMNEG00000032746	MTREX	100	83.714	Macaca_nemestrina
ENSGAFG00000012425	mtrex	98	87.397	ENSMLEG00000041051	MTREX	100	83.714	Mandrillus_leucophaeus
ENSGAFG00000012425	mtrex	100	93.360	ENSMAMG00000016753	mtrex	100	93.360	Mastacembelus_armatus
ENSGAFG00000012425	mtrex	100	93.539	ENSMZEG00005000414	mtrex	100	93.539	Maylandia_zebra
ENSGAFG00000012425	mtrex	99	62.462	ENSMGAG00000003980	MTREX	99	62.727	Meleagris_gallopavo
ENSGAFG00000012425	mtrex	100	83.603	ENSMAUG00000010727	Mtrex	100	83.954	Mesocricetus_auratus
ENSGAFG00000012425	mtrex	98	87.603	ENSMICG00000012779	MTREX	100	84.080	Microcebus_murinus
ENSGAFG00000012425	mtrex	100	83.222	ENSMOCG00000019886	Mtrex	100	83.683	Microtus_ochrogaster
ENSGAFG00000012425	mtrex	100	92.392	ENSMMOG00000002476	mtrex	100	92.392	Mola_mola
ENSGAFG00000012425	mtrex	100	84.327	ENSMODG00000019494	MTREX	100	84.327	Monodelphis_domestica
ENSGAFG00000012425	mtrex	100	88.060	ENSMALG00000002917	mtrex	99	89.184	Monopterus_albus
ENSGAFG00000012425	mtrex	100	83.939	MGP_CAROLIEiJ_G0018896	Mtrex	100	83.939	Mus_caroli
ENSGAFG00000012425	mtrex	100	83.843	ENSMUSG00000016018	Mtrex	100	83.843	Mus_musculus
ENSGAFG00000012425	mtrex	100	83.652	MGP_PahariEiJ_G0015967	Mtrex	100	83.652	Mus_pahari
ENSGAFG00000012425	mtrex	100	83.843	MGP_SPRETEiJ_G0019775	Mtrex	100	83.843	Mus_spretus
ENSGAFG00000012425	mtrex	100	83.588	ENSMPUG00000007619	MTREX	100	83.794	Mustela_putorius_furo
ENSGAFG00000012425	mtrex	100	83.048	ENSMLUG00000001152	MTREX	100	83.096	Myotis_lucifugus
ENSGAFG00000012425	mtrex	100	83.302	ENSNGAG00000011938	Mtrex	100	83.699	Nannospalax_galili
ENSGAFG00000012425	mtrex	100	93.346	ENSNBRG00000011293	mtrex	100	93.346	Neolamprologus_brichardi
ENSGAFG00000012425	mtrex	98	83.299	ENSNLEG00000001494	MTREX	100	79.638	Nomascus_leucogenys
ENSGAFG00000012425	mtrex	83	96.078	ENSMEUG00000006496	-	83	96.078	Notamacropus_eugenii
ENSGAFG00000012425	mtrex	100	70.785	ENSOPRG00000008009	MTREX	100	70.802	Ochotona_princeps
ENSGAFG00000012425	mtrex	98	86.880	ENSODEG00000017234	MTREX	100	83.333	Octodon_degus
ENSGAFG00000012425	mtrex	100	93.346	ENSONIG00000007587	mtrex	100	93.346	Oreochromis_niloticus
ENSGAFG00000012425	mtrex	52	83.946	ENSOANG00000004885	-	99	83.946	Ornithorhynchus_anatinus
ENSGAFG00000012425	mtrex	100	84.034	ENSOCUG00000004463	MTREX	100	83.889	Oryctolagus_cuniculus
ENSGAFG00000012425	mtrex	100	92.575	ENSORLG00000005443	mtrex	100	92.575	Oryzias_latipes
ENSGAFG00000012425	mtrex	100	92.478	ENSORLG00020006329	mtrex	100	92.478	Oryzias_latipes_hni
ENSGAFG00000012425	mtrex	100	92.382	ENSORLG00015012924	mtrex	100	92.382	Oryzias_latipes_hsok
ENSGAFG00000012425	mtrex	100	92.493	ENSOMEG00000008825	mtrex	100	92.493	Oryzias_melastigma
ENSGAFG00000012425	mtrex	100	83.397	ENSOGAG00000002886	MTREX	100	83.889	Otolemur_garnettii
ENSGAFG00000012425	mtrex	98	87.024	ENSOARG00000007764	MTREX	100	83.270	Ovis_aries
ENSGAFG00000012425	mtrex	98	87.397	ENSPPAG00000039291	MTREX	100	83.508	Pan_paniscus
ENSGAFG00000012425	mtrex	98	87.500	ENSPPRG00000019701	MTREX	100	83.889	Panthera_pardus
ENSGAFG00000012425	mtrex	98	85.950	ENSPTIG00000009313	MTREX	100	82.459	Panthera_tigris_altaica
ENSGAFG00000012425	mtrex	98	87.397	ENSPTRG00000016878	MTREX	100	83.508	Pan_troglodytes
ENSGAFG00000012425	mtrex	98	87.293	ENSPANG00000009697	MTREX	100	83.619	Papio_anubis
ENSGAFG00000012425	mtrex	100	86.970	ENSPKIG00000020833	mtrex	100	86.768	Paramormyrops_kingsleyae
ENSGAFG00000012425	mtrex	100	84.712	ENSPSIG00000012150	MTREX	100	84.615	Pelodiscus_sinensis
ENSGAFG00000012425	mtrex	100	90.647	ENSPMGG00000002582	mtrex	100	90.647	Periophthalmus_magnuspinnatus
ENSGAFG00000012425	mtrex	95	65.486	ENSPMAG00000009668	mtrex	100	65.385	Petromyzon_marinus
ENSGAFG00000012425	mtrex	96	88.248	ENSPCIG00000024730	MTREX	100	88.248	Phascolarctos_cinereus
ENSGAFG00000012425	mtrex	80	98.094	ENSPFOG00000003141	mtrex	100	98.475	Poecilia_formosa
ENSGAFG00000012425	mtrex	100	97.876	ENSPLAG00000021311	mtrex	100	97.876	Poecilia_latipinna
ENSGAFG00000012425	mtrex	97	96.979	ENSPMEG00000010597	mtrex	99	96.979	Poecilia_mexicana
ENSGAFG00000012425	mtrex	100	97.683	ENSPREG00000003089	mtrex	100	97.683	Poecilia_reticulata
ENSGAFG00000012425	mtrex	96	87.171	ENSPPYG00000015469	MTREX	98	83.236	Pongo_abelii
ENSGAFG00000012425	mtrex	94	73.953	ENSPCAG00000013120	MTREX	94	73.953	Procavia_capensis
ENSGAFG00000012425	mtrex	99	78.534	ENSPCOG00000018092	MTREX	100	78.288	Propithecus_coquereli
ENSGAFG00000012425	mtrex	98	87.397	ENSPVAG00000002445	MTREX	100	83.889	Pteropus_vampyrus
ENSGAFG00000012425	mtrex	100	93.443	ENSPNYG00000006164	mtrex	100	93.443	Pundamilia_nyererei
ENSGAFG00000012425	mtrex	100	87.572	ENSPNAG00000008794	mtrex	100	87.187	Pygocentrus_nattereri
ENSGAFG00000012425	mtrex	99	83.012	ENSRNOG00000010125	Mtrex	97	83.012	Rattus_norvegicus
ENSGAFG00000012425	mtrex	98	85.537	ENSRBIG00000034930	MTREX	100	81.905	Rhinopithecus_bieti
ENSGAFG00000012425	mtrex	98	87.397	ENSRROG00000039895	MTREX	100	83.619	Rhinopithecus_roxellana
ENSGAFG00000012425	mtrex	95	55.126	YJL050W	MTR4	95	52.437	Saccharomyces_cerevisiae
ENSGAFG00000012425	mtrex	98	87.500	ENSSBOG00000026693	MTREX	100	83.889	Saimiri_boliviensis_boliviensis
ENSGAFG00000012425	mtrex	98	87.397	ENSSHAG00000004600	MTREX	99	84.995	Sarcophilus_harrisii
ENSGAFG00000012425	mtrex	100	86.705	ENSSFOG00015014355	skiv2l2	100	86.609	Scleropages_formosus
ENSGAFG00000012425	mtrex	100	92.189	ENSSMAG00000007572	mtrex	100	92.189	Scophthalmus_maximus
ENSGAFG00000012425	mtrex	100	93.539	ENSSDUG00000023789	mtrex	100	93.539	Seriola_dumerili
ENSGAFG00000012425	mtrex	100	93.635	ENSSLDG00000006301	mtrex	100	93.635	Seriola_lalandi_dorsalis
ENSGAFG00000012425	mtrex	97	87.983	ENSSARG00000008387	MTREX	100	82.078	Sorex_araneus
ENSGAFG00000012425	mtrex	89	86.235	ENSSPUG00000007071	MTREX	96	86.235	Sphenodon_punctatus
ENSGAFG00000012425	mtrex	100	90.402	ENSSPAG00000011319	mtrex	100	89.834	Stegastes_partitus
ENSGAFG00000012425	mtrex	98	87.500	ENSSSCG00000016911	MTREX	100	83.794	Sus_scrofa
ENSGAFG00000012425	mtrex	100	82.325	ENSTGUG00000002480	MTREX	100	82.212	Taeniopygia_guttata
ENSGAFG00000012425	mtrex	100	90.357	ENSTRUG00000014571	mtrex	100	90.357	Takifugu_rubripes
ENSGAFG00000012425	mtrex	96	77.024	ENSTBEG00000007769	MTREX	93	77.024	Tupaia_belangeri
ENSGAFG00000012425	mtrex	100	83.652	ENSTTRG00000008678	MTREX	100	83.413	Tursiops_truncatus
ENSGAFG00000012425	mtrex	98	87.397	ENSUAMG00000023061	MTREX	100	83.508	Ursus_americanus
ENSGAFG00000012425	mtrex	98	86.701	ENSUMAG00000009373	MTREX	99	88.699	Ursus_maritimus
ENSGAFG00000012425	mtrex	98	77.686	ENSVPAG00000011174	MTREX	100	74.643	Vicugna_pacos
ENSGAFG00000012425	mtrex	98	87.603	ENSVVUG00000021337	MTREX	100	83.889	Vulpes_vulpes
ENSGAFG00000012425	mtrex	100	85.274	ENSXETG00000032798	MTREX	100	85.274	Xenopus_tropicalis
ENSGAFG00000012425	mtrex	100	97.973	ENSXMAG00000004799	mtrex	100	97.973	Xiphophorus_maculatus