EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000012721 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 7292 bases
Position: chrNHOQ01001816.1:3069538-3076829
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000018839	RRM_1	PF00076.22	1.8e-32	1	2
ENSGAFP00000018839	RRM_1	PF00076.22	1.8e-32	2	2
ENSGAFP00000018835	RRM_1	PF00076.22	2.1e-32	1	2
ENSGAFP00000018835	RRM_1	PF00076.22	2.1e-32	2	2
ENSGAFP00000018844	RRM_1	PF00076.22	2.9e-32	1	2
ENSGAFP00000018844	RRM_1	PF00076.22	2.9e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000019014	-	2629	-	ENSGAFP00000018835	265 (aa)	-	-
ENSGAFT00000019023	-	1427	-	ENSGAFP00000018844	245 (aa)	-	UPI000293BDF9
ENSGAFT00000019018	-	3082	-	ENSGAFP00000018839	250 (aa)	-	UPI0006D905AF

Gene Model

Click here to download ENSGAFG00000012721's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000012721's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000012721	-	79	85.572	ENSGAFG00000000609	-	79	85.787
ENSGAFG00000012721	-	66	47.647	ENSGAFG00000018496	srsf4	62	40.223
ENSGAFG00000012721	-	64	43.094	ENSGAFG00000002865	srsf5b	59	43.478
ENSGAFG00000012721	-	66	40.244	ENSGAFG00000018237	srsf5a	68	35.242
ENSGAFG00000012721	-	72	67.416	ENSGAFG00000009123	srsf9	83	67.978

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000012721	-	73	87.845	ENSACIG00000002623	-	96	88.587	Amphilophus_citrinellus
ENSGAFG00000012721	-	100	99.184	ENSACLG00000005676	-	100	99.184	Astatotilapia_calliptera
ENSGAFG00000012721	-	96	75.000	ENSACLG00000021693	-	80	83.085	Astatotilapia_calliptera
ENSGAFG00000012721	-	93	55.417	WBGene00004700	rsp-3	75	62.051	Caenorhabditis_elegans
ENSGAFG00000012721	-	73	72.928	ENSCING00000007375	-	76	72.222	Ciona_intestinalis
ENSGAFG00000012721	-	71	58.286	ENSCING00000000257	-	99	54.598	Ciona_intestinalis
ENSGAFG00000012721	-	62	59.603	ENSCSAVG00000003567	-	96	51.497	Ciona_savignyi
ENSGAFG00000012721	-	73	72.928	ENSCSAVG00000006093	-	91	71.823	Ciona_savignyi
ENSGAFG00000012721	-	73	68.817	FBgn0283477	SF2	73	68.280	Drosophila_melanogaster
ENSGAFG00000012721	-	98	75.000	ENSEBUG00000009582	-	82	81.053	Eptatretus_burgeri
ENSGAFG00000012721	-	78	85.714	ENSFHEG00000017425	-	97	84.865	Fundulus_heteroclitus
ENSGAFG00000012721	-	73	95.652	ENSGMOG00000010606	-	99	95.676	Gadus_morhua
ENSGAFG00000012721	-	73	97.778	ENSGACG00000011094	-	99	97.283	Gasterosteus_aculeatus
ENSGAFG00000012721	-	80	83.010	ENSHBUG00000015576	-	80	84.000	Haplochromis_burtoni
ENSGAFG00000012721	-	78	82.902	ENSHCOG00000008016	-	77	81.865	Hippocampus_comes
ENSGAFG00000012721	-	99	81.557	ENSMFAG00000034223	-	65	89.119	Macaca_fascicularis
ENSGAFG00000012721	-	100	99.184	ENSMZEG00005007947	-	100	99.184	Maylandia_zebra
ENSGAFG00000012721	-	78	84.422	ENSMZEG00005019071	-	98	84.043	Maylandia_zebra
ENSGAFG00000012721	-	78	87.047	ENSMMOG00000018849	-	78	87.047	Mola_mola
ENSGAFG00000012721	-	100	99.184	ENSNBRG00000019981	-	100	99.184	Neolamprologus_brichardi
ENSGAFG00000012721	-	78	86.387	ENSNBRG00000008134	-	77	85.572	Neolamprologus_brichardi
ENSGAFG00000012721	-	66	68.712	ENSOPRG00000004745	-	96	67.901	Ochotona_princeps
ENSGAFG00000012721	-	78	83.663	ENSONIG00000004857	-	80	85.149	Oreochromis_niloticus
ENSGAFG00000012721	-	57	83.453	ENSOANG00000007320	-	54	94.318	Ornithorhynchus_anatinus
ENSGAFG00000012721	-	68	55.689	ENSOCUG00000026856	-	100	51.685	Oryctolagus_cuniculus
ENSGAFG00000012721	-	78	87.113	ENSORLG00000005314	-	76	89.175	Oryzias_latipes
ENSGAFG00000012721	-	78	87.113	ENSORLG00015015497	-	76	89.175	Oryzias_latipes_hsok
ENSGAFG00000012721	-	78	85.930	ENSOMEG00000017711	-	76	87.437	Oryzias_melastigma
ENSGAFG00000012721	-	100	99.600	ENSPLAG00000019613	-	100	99.600	Poecilia_latipinna
ENSGAFG00000012721	-	100	99.600	ENSPLAG00000019553	-	100	99.600	Poecilia_latipinna
ENSGAFG00000012721	-	79	86.432	ENSPREG00000016792	-	79	86.667	Poecilia_reticulata
ENSGAFG00000012721	-	78	83.582	ENSPNYG00000020651	-	77	85.075	Pundamilia_nyererei
ENSGAFG00000012721	-	100	99.184	ENSPNYG00000017115	-	100	99.184	Pundamilia_nyererei
ENSGAFG00000012721	-	83	92.157	ENSSFOG00015004989	-	70	92.708	Scleropages_formosus
ENSGAFG00000012721	-	78	85.096	ENSSDUG00000003887	-	79	85.096	Seriola_dumerili
ENSGAFG00000012721	-	78	85.938	ENSTRUG00000017058	-	79	86.979	Takifugu_rubripes
ENSGAFG00000012721	-	78	82.902	ENSTNIG00000009993	-	80	83.938	Tetraodon_nigroviridis
ENSGAFG00000012721	-	79	86.082	ENSXCOG00000017888	-	78	87.701	Xiphophorus_couchianus
ENSGAFG00000012721	-	100	100.000	ENSXCOG00000009643	-	100	100.000	Xiphophorus_couchianus
ENSGAFG00000012721	-	79	86.000	ENSXMAG00000010797	-	79	86.224	Xiphophorus_maculatus